RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 FAM19A2Q8N3H0 131 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 SLC25A29Q8N8R3 303 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 TOMM6Q96B49 74 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 IFI27L1Q96BM0 104 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 RPL39LQ96EH5 51 aaKnown RBP3.56□□□□□ -1.84
LDLR-209ENST00000558528 SCGB3A1Q96QR1 104 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 TIMM17AQ99595 171 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 B9D2Q9BPU9 175 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 F5H768 121 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 UBE2L6O14933 153 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 NUPR1O60356 82 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 KRTDAPP60985 99 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 UBE2D3P61077 147 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 UBE2D2P62837 147 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 CASC10Q5T4H9 136 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 NOTCH2NLQ7Z3S9 236 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 MRPL52Q86TS9 123 aaKnown RBP3.55□□□□□ -1.84
LDLR-209ENST00000558528 C20orf203Q8NBC4 194 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 ATP6V0E2Q8NHE4 81 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 TIMM21Q9BVV7 248 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 SPANXA1Q9NS26 97 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 ICOSQ9Y6W8 199 aa3.55□□□□□ -1.84
LDLR-209ENST00000558528 TRBV25-1A0A075B6N4 114 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 TRAV10A0A0B4J240 114 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 TRAV12-1A0A0B4J245 112 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 SYS1-DBNDD2H3BUS1 97 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 GAS8-AS1O95177 125 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 C3orf79P0CE67 100 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 ZNF25P17030 456 aaPredicted RBP3.54□□□□□ -1.84
LDLR-209ENST00000558528 SEC11AP67812 179 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 LGALS9CQ6DKI2 356 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 C6orf223Q8N319 242 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 NKAPP1Q8N9T2 125 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 C15orf53Q8NAA6 179 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 TMEM101Q96IK0 257 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 TMEM243Q9BU79 118 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 Q9UF83 564 aa3.54□□□□□ -1.84
LDLR-209ENST00000558528 ALMS1Q8TCU4 4167 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 DEFB131BA0A096LNP1 70 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 A0A0J9YWU9 116 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 IFITM10A6NMD0 228 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 DEFB4AO15263 64 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 CCL25O15444 150 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 PLNP26678 52 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 PFN2P35080 140 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 MRPS36P82909 103 aaKnown RBP3.53□□□□□ -1.84
LDLR-209ENST00000558528 RPL18AQ02543 176 aaKnown RBP3.53□□□□□ -1.84
LDLR-209ENST00000558528 PMVKQ15126 192 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 C12orf74Q32Q52 190 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 AMMECR1LQ6DCA0 310 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 REG3GQ6UW15 175 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 NEGR1Q7Z3B1 354 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 LITAFQ99732 161 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 OPRPNQ99935 248 aaPredicted RBP3.53□□□□□ -1.84
LDLR-209ENST00000558528 C2orf88Q9BSF0 95 aa3.53□□□□□ -1.84
LDLR-209ENST00000558528 A0A087WX48 190 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 TRBV6-8A0A0A6YYG3 113 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 TRAV8-6A0A0B4J262 113 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 IGIPA6NJ69 53 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 P0DMU3 169 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 FAM231AP0DMU4 169 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 FAM231CP0DMU5 169 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 HTN3P15516 51 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 TCTAP57738 103 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 PYY3Q5JQD4 70 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 LINC01545Q5VT33 79 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 TEX43Q6ZNM6 134 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 MRPL55Q7Z7F7 128 aaKnown RBP3.52□□□□□ -1.85
LDLR-209ENST00000558528 C12orf57Q99622 126 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 CHCHD7Q9BUK0 85 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 CELA1Q9UNI1 258 aa3.52□□□□□ -1.85
LDLR-209ENST00000558528 IGLV8-61A0A075B6I0 122 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 A0A096LNJ9 63 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 TMEM262E9PQX1 116 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 F8VRH5 84 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 TSTD3H0UI37 97 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 DPM2O94777 84 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 IGKCP01834 107 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 LINC00694P0DN24 101 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 HERVK_113P61574 105 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 LELP1Q5T871 98 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 OR5A1Q8NGJ0 315 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 VSIG2Q96IQ7 327 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 VAMP8Q9BV40 100 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 UBE2D4Q9Y2X8 147 aa3.51□□□□□ -1.85
LDLR-209ENST00000558528 A0A0J9YY99 117 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 EPM2AB3EWF7 344 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 K7EP13 123 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 OXTP01178 125 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 FGF6P10767 208 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 Q6ZTC4 211 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 ZNF664Q8N3J9 261 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 MUC7Q8TAX7 377 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 AMELXQ99217 191 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 PMCHL2Q9BQD1 86 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 CST9LQ9H4G1 147 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 DHRS4-AS1Q9P1J3 65 aa3.5□□□□□ -1.85
LDLR-209ENST00000558528 KLK5Q9Y337 293 aaPredicted RBP3.5□□□□□ -1.85
LDLR-209ENST00000558528 DYNC1H1Q14204 4646 aaKnown RBP3.5□□□□□ -1.85
LDLR-209ENST00000558528 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms