RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 RPL36AP83881 106 aaKnown RBP8.17□□□□□ -1.1
LDLR-208ENST00000558518 Q6Q795 121 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 STHQ8IWL8 128 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 RPL36ALQ969Q0 106 aaKnown RBP8.17□□□□□ -1.1
LDLR-208ENST00000558518 LECT2O14960 151 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 SND1-IT1Q9HBX3 110 aa8.17□□□□□ -1.1
LDLR-208ENST00000558518 FAM110AQ9BQ89 295 aa8.16□□□□□ -1.1
LDLR-208ENST00000558518 B4DSR2 109 aa8.16□□□□□ -1.1
LDLR-208ENST00000558518 A0A1B0GX51 115 aa8.16□□□□□ -1.1
LDLR-208ENST00000558518 C9orf129Q5T035 196 aaKnown RBP8.15□□□□□ -1.1
LDLR-208ENST00000558518 VPREB3Q9UKI3 123 aa8.15□□□□□ -1.1
LDLR-208ENST00000558518 A0A087WYN8 130 aa8.15□□□□□ -1.1
LDLR-208ENST00000558518 SMIM1B2RUZ4 78 aa8.15□□□□□ -1.1
LDLR-208ENST00000558518 INSP01308 110 aa8.15□□□□□ -1.1
LDLR-208ENST00000558518 LINC00643Q86TS7 51 aa8.15□□□□□ -1.11
LDLR-208ENST00000558518 MALP21145 153 aa8.14□□□□□ -1.11
LDLR-208ENST00000558518 C3orf22Q8N5N4 141 aa8.14□□□□□ -1.11
LDLR-208ENST00000558518 WFDC10AQ9H1F0 79 aa8.14□□□□□ -1.11
LDLR-208ENST00000558518 APCP25054 2843 aa8.14□□□□□ -1.11
LDLR-208ENST00000558518 UCNP55089 124 aa8.14□□□□□ -1.11
LDLR-208ENST00000558518 PEMTQ9UBM1 199 aa8.14□□□□□ -1.11
LDLR-208ENST00000558518 KLK9Q2XQG4 91 aa8.13□□□□□ -1.11
LDLR-208ENST00000558518 MAP6D1Q9H9H5 199 aa8.13□□□□□ -1.11
LDLR-208ENST00000558518 SETXQ7Z333 2677 aaKnown RBP8.13□□□□□ -1.11
LDLR-208ENST00000558518 PRB1P04280 392 aa8.13□□□□□ -1.11
LDLR-208ENST00000558518 TRGV4A0A0C4DH28 118 aa8.12□□□□□ -1.11
LDLR-208ENST00000558518 BRI3O95415 125 aa8.12□□□□□ -1.11
LDLR-208ENST00000558518 PRR3P79522 188 aaKnown RBP8.12□□□□□ -1.11
LDLR-208ENST00000558518 LINC00337Q8N6G1 96 aa8.12□□□□□ -1.11
LDLR-208ENST00000558518 DEFB130BP0DP73 79 aa8.12□□□□□ -1.11
LDLR-208ENST00000558518 DEFB130AP0DP74 79 aa8.12□□□□□ -1.11
LDLR-208ENST00000558518 Q96MF0 132 aa8.12□□□□□ -1.11
LDLR-208ENST00000558518 XCL1P47992 114 aa8.11□□□□□ -1.11
LDLR-208ENST00000558518 SMIM11BQ8TCY0 68 aa8.11□□□□□ -1.11
LDLR-208ENST00000558518 FLNAP21333 2647 aaKnown RBP8.11□□□□□ -1.11
LDLR-208ENST00000558518 C6orf226Q5I0X4 101 aa8.11□□□□□ -1.11
LDLR-208ENST00000558518 INAFM2P0DMQ5 153 aa8.11□□□□□ -1.11
LDLR-208ENST00000558518 HIST2H2BCQ6DN03 193 aa8.11□□□□□ -1.11
LDLR-208ENST00000558518 NTM-AS1Q6ZSK4 140 aa8.11□□□□□ -1.11
LDLR-208ENST00000558518 TRBV7-7A0A0K0K1E9 115 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 FAM240AA0A1B0GVK7 77 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 DSCR8Q96T75 97 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 ACYP1P07311 99 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 TMEM243Q9BU79 118 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 TMEM126AQ9H061 195 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 IGSF10Q6WRI0 2623 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 UQCRQO14949 82 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 KIR2DL5BQ8NHK3 375 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 COPS9Q8WXC6 57 aa8.1□□□□□ -1.11
LDLR-208ENST00000558518 NBL1P41271 181 aa8.09□□□□□ -1.11
LDLR-208ENST00000558518 COX7B2Q8TF08 81 aa8.09□□□□□ -1.11
LDLR-208ENST00000558518 ESM1Q9NQ30 184 aa8.09□□□□□ -1.11
LDLR-208ENST00000558518 TRAV23DV6A0A075B6W5 121 aa8.09□□□□□ -1.11
LDLR-208ENST00000558518 K7EQD1 137 aa8.09□□□□□ -1.11
LDLR-208ENST00000558518 LINC00846Q9NV44 126 aa8.09□□□□□ -1.11
LDLR-208ENST00000558518 IGLV10-54A0A075B6I4 117 aa8.08□□□□□ -1.12
LDLR-208ENST00000558518 RNF152Q8N8N0 203 aa8.08□□□□□ -1.12
LDLR-208ENST00000558518 CYSTM1Q9H1C7 97 aa8.08□□□□□ -1.12
LDLR-208ENST00000558518 TRAV13-2A0A0B4J235 113 aa8.08□□□□□ -1.12
LDLR-208ENST00000558518 TMEM89A2RUT3 159 aa8.08□□□□□ -1.12
LDLR-208ENST00000558518 HILS1P60008 231 aa8.08□□□□□ -1.12
LDLR-208ENST00000558518 TRACP01848 142 aa8.08□□□□□ -1.12
LDLR-208ENST00000558518 IGLV4-60A0A075B6I1 120 aa8.07□□□□□ -1.12
LDLR-208ENST00000558518 C11orf72Q8NBR9 251 aa8.07□□□□□ -1.12
LDLR-208ENST00000558518 TIMM17BO60830 172 aa8.07□□□□□ -1.12
LDLR-208ENST00000558518 CXCL5P42830 114 aa8.07□□□□□ -1.12
LDLR-208ENST00000558518 FAM19A5Q7Z5A7 132 aaPredicted RBP8.07□□□□□ -1.12
LDLR-208ENST00000558518 CDC42SE2Q9NRR3 84 aa8.07□□□□□ -1.12
LDLR-208ENST00000558518 CCL18P55774 89 aa8.07□□□□□ -1.12
LDLR-208ENST00000558518 COX7CP15954 63 aa8.06□□□□□ -1.12
LDLR-208ENST00000558518 F8P00451 2351 aa8.06□□□□□ -1.12
LDLR-208ENST00000558518 LINC01356Q8N9X3 169 aa8.05□□□□□ -1.12
LDLR-208ENST00000558518 C1orf158Q8N1D5 194 aa8.05□□□□□ -1.12
LDLR-208ENST00000558518 WFDC11Q8NEX6 87 aa8.05□□□□□ -1.12
LDLR-208ENST00000558518 DNAJC30Q96LL9 226 aa8.05□□□□□ -1.12
LDLR-208ENST00000558518 ZNF702PQ9H963 129 aa8.05□□□□□ -1.12
LDLR-208ENST00000558518 ITPR3Q14573 2671 aa8.05□□□□□ -1.12
LDLR-208ENST00000558518 IGLV5-39A0A0G2JS06 123 aa8.05□□□□□ -1.12
LDLR-208ENST00000558518 IGKV2-28A0A075B6P5 120 aa8.04□□□□□ -1.12
LDLR-208ENST00000558518 IGKV2D-28P01615 120 aa8.04□□□□□ -1.12
LDLR-208ENST00000558518 LINC00526Q96FQ7 95 aa8.04□□□□□ -1.12
LDLR-208ENST00000558518 DEFB114Q30KQ6 69 aa8.04□□□□□ -1.12
LDLR-208ENST00000558518 ODF3L2Q3SX64 289 aa8.04□□□□□ -1.12
LDLR-208ENST00000558518 A8MTW9 85 aa8.04□□□□□ -1.12
LDLR-208ENST00000558518 J3KT08 172 aa8.03□□□□□ -1.12
LDLR-208ENST00000558518 ATOX1O00244 68 aa8.03□□□□□ -1.12
LDLR-208ENST00000558518 DEFB121Q5J5C9 76 aa8.03□□□□□ -1.12
LDLR-208ENST00000558518 CSDC2Q9Y534 153 aaKnown RBP8.03□□□□□ -1.12
LDLR-208ENST00000558518 USP17L23D6RBM5 183 aa8.03□□□□□ -1.12
LDLR-208ENST00000558518 ENHOQ6UWT2 76 aa8.02□□□□□ -1.13
LDLR-208ENST00000558518 LRRC75A-AS1Q8N1F1 130 aa8.02□□□□□ -1.13
LDLR-208ENST00000558518 IMUPQ9GZP8 106 aa8.02□□□□□ -1.13
LDLR-208ENST00000558518 DEFB4AO15263 64 aa8.02□□□□□ -1.13
LDLR-208ENST00000558518 C9orf116Q5BN46 136 aaPredicted RBP8.02□□□□□ -1.13
LDLR-208ENST00000558518 F5H768 121 aa8.02□□□□□ -1.13
LDLR-208ENST00000558518 HAMPP81172 84 aa8.02□□□□□ -1.13
LDLR-208ENST00000558518 FAM19A1Q7Z5A9 133 aa8.02□□□□□ -1.13
LDLR-208ENST00000558518 RPL18AQ02543 176 aaKnown RBP8.01□□□□□ -1.13
LDLR-208ENST00000558518 C22orf24Q9Y442 160 aa8.01□□□□□ -1.13
LDLR-208ENST00000558518 IGLV5-45A0A087WSX0 123 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 116.6 ms