RNA–Protein interactions for RNA: ENST00000553751.1

FOXA1-203, Transcript of forkhead box A1, humanhuman

TSL 4

Gene FOXA1, Length 507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-203ENST00000553751 TMEM141Q96I45 108 aa12.99□□□□□ -0.33
FOXA1-203ENST00000553751 MYCBP2O75592 4640 aa12.99□□□□□ -0.33
FOXA1-203ENST00000553751 IGHV3OR16-9A0A0B4J2B5 98 aa12.98□□□□□ -0.33
FOXA1-203ENST00000553751 NDUFA5Q16718 116 aa12.98□□□□□ -0.33
FOXA1-203ENST00000553751 SVBPQ8N300 66 aa12.98□□□□□ -0.33
FOXA1-203ENST00000553751 PRSS3P2Q8NHM4 247 aa12.98□□□□□ -0.33
FOXA1-203ENST00000553751 CARD19Q96LW7 228 aa12.98□□□□□ -0.33
FOXA1-203ENST00000553751 ALKBH7Q9BT30 221 aaPredicted RBP12.98□□□□□ -0.33
FOXA1-203ENST00000553751 FLG2Q5D862 2391 aaPredicted RBP12.97□□□□□ -0.33
FOXA1-203ENST00000553751 IGLV4-69A0A075B6H9 119 aa12.97□□□□□ -0.33
FOXA1-203ENST00000553751 SNAPINO95295 136 aa12.97□□□□□ -0.33
FOXA1-203ENST00000553751 MRPL18Q9H0U6 180 aaKnown RBP12.97□□□□□ -0.33
FOXA1-203ENST00000553751 TGIF2-C20orf24A0A0A6YYL0 155 aa12.96□□□□□ -0.33
FOXA1-203ENST00000553751 IGIPA6NJ69 53 aa12.96□□□□□ -0.33
FOXA1-203ENST00000553751 KRTAP10-4P60372 401 aaPredicted RBP12.96□□□□□ -0.33
FOXA1-203ENST00000553751 SYCNQ0VAF6 134 aa12.96□□□□□ -0.33
FOXA1-203ENST00000553751 TEX43Q6ZNM6 134 aa12.96□□□□□ -0.33
FOXA1-203ENST00000553751 APOMO95445 188 aa12.95□□□□□ -0.34
FOXA1-203ENST00000553751 NPSP0C0P6 89 aa12.95□□□□□ -0.34
FOXA1-203ENST00000553751 LINC00173Q6ZV60 143 aa12.95□□□□□ -0.34
FOXA1-203ENST00000553751 FABP9Q0Z7S8 132 aa12.94□□□□□ -0.34
FOXA1-203ENST00000553751 LINC00242Q5T6M2 205 aa12.94□□□□□ -0.34
FOXA1-203ENST00000553751 AMELXQ99217 191 aa12.94□□□□□ -0.34
FOXA1-203ENST00000553751 A0A087WYN8 130 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 A0A096LNI7 61 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 LINC01546A6NGU7 62 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 UBE2D1P51668 147 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 SPAG11BQ08648 103 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 ZC2HC1BQ5TFG8 222 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 Q6ZN92 141 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 Q6ZRU5 148 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 OR10D4PQ8NGN7 298 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 TOMM6Q96B49 74 aa12.93□□□□□ -0.34
FOXA1-203ENST00000553751 IGKV2-24A0A0C4DH68 120 aa12.92□□□□□ -0.34
FOXA1-203ENST00000553751 C2orf48Q96LS8 159 aa12.92□□□□□ -0.34
FOXA1-203ENST00000553751 CAMK2N2Q96S95 79 aa12.92□□□□□ -0.34
FOXA1-203ENST00000553751 C2orf88Q9BSF0 95 aa12.92□□□□□ -0.34
FOXA1-203ENST00000553751 G0S2P27469 103 aa12.91□□□□□ -0.34
FOXA1-203ENST00000553751 ORAOV1Q8WV07 137 aa12.91□□□□□ -0.34
FOXA1-203ENST00000553751 TIMM17AQ99595 171 aa12.91□□□□□ -0.34
FOXA1-203ENST00000553751 VCX2Q9H322 139 aa12.91□□□□□ -0.34
FOXA1-203ENST00000553751 PLAC8Q9NZF1 115 aa12.91□□□□□ -0.34
FOXA1-203ENST00000553751 PKIGQ9Y2B9 76 aa12.91□□□□□ -0.34
FOXA1-203ENST00000553751 A0A087WZ39 114 aa12.9□□□□□ -0.34
FOXA1-203ENST00000553751 MAJINQ3KP22 176 aa12.9□□□□□ -0.34
FOXA1-203ENST00000553751 DPH3Q96FX2 82 aa12.9□□□□□ -0.34
FOXA1-203ENST00000553751 TRAPPC1Q9Y5R8 145 aa12.89□□□□□ -0.35
FOXA1-203ENST00000553751 RPL37AP61513 92 aaKnown RBP12.88□□□□□ -0.35
FOXA1-203ENST00000553751 FAM19A3Q7Z5A8 133 aa12.88□□□□□ -0.35
FOXA1-203ENST00000553751 DMBT1Q9UGM3 2413 aaPredicted RBP12.88□□□□□ -0.35
FOXA1-203ENST00000553751 PAPPA-AS1Q5QFB9 102 aa12.87□□□□□ -0.35
FOXA1-203ENST00000553751 ERASQ7Z444 233 aa12.87□□□□□ -0.35
FOXA1-203ENST00000553751 YPEL4Q96NS1 127 aa12.87□□□□□ -0.35
FOXA1-203ENST00000553751 FA2HQ7L5A8 372 aa12.86□□□□□ -0.35
FOXA1-203ENST00000553751 STPG4Q8N801 248 aa12.86□□□□□ -0.35
FOXA1-203ENST00000553751 SCGB3A1Q96QR1 104 aa12.86□□□□□ -0.35
FOXA1-203ENST00000553751 LINC00474Q9P2X8 69 aa12.86□□□□□ -0.35
FOXA1-203ENST00000553751 LOC107984640A0A0U1RRK4 108 aa12.85□□□□□ -0.35
FOXA1-203ENST00000553751 C18orf32Q8TCD1 76 aa12.85□□□□□ -0.35
FOXA1-203ENST00000553751 LINC01549A6NIU2 74 aa12.84□□□□□ -0.35
FOXA1-203ENST00000553751 F8WDY8 70 aa12.84□□□□□ -0.35
FOXA1-203ENST00000553751 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.84□□□□□ -0.35
FOXA1-203ENST00000553751 PTTG1IPP53801 180 aa12.84□□□□□ -0.35
FOXA1-203ENST00000553751 KIAA0087Q14695 138 aa12.84□□□□□ -0.35
FOXA1-203ENST00000553751 RNF151Q2KHN1 245 aa12.84□□□□□ -0.35
FOXA1-203ENST00000553751 LINC01561Q8N1V8 128 aa12.84□□□□□ -0.35
FOXA1-203ENST00000553751 SMCO4Q9NRQ5 59 aa12.84□□□□□ -0.35
FOXA1-203ENST00000553751 MRPL35Q9NZE8 188 aaKnown RBP12.84□□□□□ -0.35
FOXA1-203ENST00000553751 PKHD1L1Q86WI1 4243 aa12.83□□□□□ -0.36
FOXA1-203ENST00000553751 NDUFA1O15239 70 aa12.83□□□□□ -0.36
FOXA1-203ENST00000553751 URB1-AS1Q96HZ7 61 aa12.83□□□□□ -0.36
FOXA1-203ENST00000553751 A0A0J9YXV3 536 aa12.82□□□□□ -0.36
FOXA1-203ENST00000553751 C10orf25Q5T742 122 aa12.82□□□□□ -0.36
FOXA1-203ENST00000553751 HERC1Q15751 4861 aa12.82□□□□□ -0.36
FOXA1-203ENST00000553751 HERVK_113P63121 156 aa12.81□□□□□ -0.36
FOXA1-203ENST00000553751 GAGE2BQ13066 116 aa12.81□□□□□ -0.36
FOXA1-203ENST00000553751 UNQ6190/PRO20217Q6UXQ8 127 aa12.81□□□□□ -0.36
FOXA1-203ENST00000553751 CBLN2Q8IUK8 224 aa12.81□□□□□ -0.36
FOXA1-203ENST00000553751 SLC7A5P1Q8MH63 180 aa12.81□□□□□ -0.36
FOXA1-203ENST00000553751 A0A096LNJ9 63 aa12.8□□□□□ -0.36
FOXA1-203ENST00000553751 SEC11AP67812 179 aa12.8□□□□□ -0.36
FOXA1-203ENST00000553751 C6orf48Q9UBA6 75 aa12.8□□□□□ -0.36
FOXA1-203ENST00000553751 HNRNPA3P51991 378 aaKnown RBP12.79□□□□□ -0.36
FOXA1-203ENST00000553751 RPL18AQ02543 176 aaKnown RBP12.79□□□□□ -0.36
FOXA1-203ENST00000553751 CDKN2A-AS1Q9UH64 79 aa12.79□□□□□ -0.36
FOXA1-203ENST00000553751 LINC00614P0C842 121 aa12.78□□□□□ -0.36
FOXA1-203ENST00000553751 C7orf33Q8WU49 177 aa12.78□□□□□ -0.36
FOXA1-203ENST00000553751 GEMIN7Q9H840 131 aaKnown RBP12.78□□□□□ -0.36
FOXA1-203ENST00000553751 C2orf82Q6UX34 121 aa12.77□□□□□ -0.37
FOXA1-203ENST00000553751 CST9LQ9H4G1 147 aa12.77□□□□□ -0.37
FOXA1-203ENST00000553751 LRP1Q07954 4544 aaKnown RBP12.76□□□□□ -0.37
FOXA1-203ENST00000553751 TINCRA0A1B0GVN0 87 aa12.75□□□□□ -0.37
FOXA1-203ENST00000553751 TLX1NBP0CAT3 122 aa12.75□□□□□ -0.37
FOXA1-203ENST00000553751 PMVKQ15126 192 aa12.75□□□□□ -0.37
FOXA1-203ENST00000553751 IGLV5-45A0A087WSX0 123 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 TRBV30A0A0K0K1B3 111 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 A0A1W2PNN7 141 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 HBDP02042 147 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 PMCHL1Q16048 86 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 Q6ZRP5 223 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms