RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 AMN1Q8IY45 258 aa10.07□□□□□ -0.8
VPS29-204ENST00000548259 HIGD1CA8MV81 97 aa10.06□□□□□ -0.8
VPS29-204ENST00000548259 BATF3Q9NR55 127 aa10.06□□□□□ -0.8
VPS29-204ENST00000548259 C6orf48Q9UBA6 75 aa10.06□□□□□ -0.8
VPS29-204ENST00000548259 FAT4Q6V0I7 4981 aa10.05□□□□□ -0.8
VPS29-204ENST00000548259 IGHV3OR16-9A0A0B4J2B5 98 aa10.05□□□□□ -0.8
VPS29-204ENST00000548259 C10orf25Q5T742 122 aa10.05□□□□□ -0.8
VPS29-204ENST00000548259 TGIF2-C20orf24A0A0A6YYL0 155 aa10.04□□□□□ -0.8
VPS29-204ENST00000548259 TRBV30A0A0K0K1B3 111 aa10.04□□□□□ -0.8
VPS29-204ENST00000548259 TMEM250H0YL14 139 aa10.04□□□□□ -0.8
VPS29-204ENST00000548259 NUPR1O60356 82 aa10.04□□□□□ -0.8
VPS29-204ENST00000548259 RIGQ13278 110 aa10.04□□□□□ -0.8
VPS29-204ENST00000548259 PACRGQ96M98 296 aaPredicted RBP10.04□□□□□ -0.8
VPS29-204ENST00000548259 SPANXA1Q9NS26 97 aa10.04□□□□□ -0.8
VPS29-204ENST00000548259 IFITM10A6NMD0 228 aa10.03□□□□□ -0.8
VPS29-204ENST00000548259 NDUFC2-KCTD14E9PQ53 114 aa10.03□□□□□ -0.8
VPS29-204ENST00000548259 SMKR1H3BMG3 65 aa10.03□□□□□ -0.8
VPS29-204ENST00000548259 HBBP68871 147 aa10.03□□□□□ -0.8
VPS29-204ENST00000548259 CRYGAP11844 174 aa10.02□□□□□ -0.81
VPS29-204ENST00000548259 LBHQ53QV2 105 aaPredicted RBP10.02□□□□□ -0.81
VPS29-204ENST00000548259 TYMSOSQ8TAI1 123 aa10.02□□□□□ -0.81
VPS29-204ENST00000548259 NRACQ8N912 160 aa10.01□□□□□ -0.81
VPS29-204ENST00000548259 C20orf78Q9BR46 151 aa10.01□□□□□ -0.81
VPS29-204ENST00000548259 RPL28P46779 137 aaKnown RBP10□□□□□ -0.81
VPS29-204ENST00000548259 CEBPGP53567 150 aa10□□□□□ -0.81
VPS29-204ENST00000548259 MRPS36P82909 103 aaKnown RBP10□□□□□ -0.81
VPS29-204ENST00000548259 KRTAP7-1Q8IUC3 87 aa10□□□□□ -0.81
VPS29-204ENST00000548259 CDIP1Q9H305 208 aa9.99□□□□□ -0.81
VPS29-204ENST00000548259 LINC00862A6NCI5 91 aa9.98□□□□□ -0.81
VPS29-204ENST00000548259 RPL39P62891 51 aaKnown RBP9.97□□□□□ -0.81
VPS29-204ENST00000548259 RPL32P62910 135 aaKnown RBP9.97□□□□□ -0.81
VPS29-204ENST00000548259 C9orf129Q5T035 196 aaKnown RBP9.97□□□□□ -0.81
VPS29-204ENST00000548259 SLC51BQ86UW2 128 aa9.97□□□□□ -0.81
VPS29-204ENST00000548259 OSTCQ9NRP0 149 aa9.97□□□□□ -0.81
VPS29-204ENST00000548259 CKS2P33552 79 aa9.96□□□□□ -0.82
VPS29-204ENST00000548259 SMIM7Q9BQ49 75 aa9.96□□□□□ -0.82
VPS29-204ENST00000548259 CTDSP1Q9GZU7 261 aa9.96□□□□□ -0.82
VPS29-204ENST00000548259 TRBV24-1A0A075B6N3 115 aa9.95□□□□□ -0.82
VPS29-204ENST00000548259 PRSS2P07478 247 aa9.95□□□□□ -0.82
VPS29-204ENST00000548259 KIAA0087Q14695 138 aa9.95□□□□□ -0.82
VPS29-204ENST00000548259 FAM104BQ5XKR9 115 aa9.95□□□□□ -0.82
VPS29-204ENST00000548259 C22orf24Q9Y442 160 aa9.95□□□□□ -0.82
VPS29-204ENST00000548259 A0A087X002 238 aa9.94□□□□□ -0.82
VPS29-204ENST00000548259 IFI27P40305 119 aaPredicted RBP9.94□□□□□ -0.82
VPS29-204ENST00000548259 CKS1BP61024 79 aa9.94□□□□□ -0.82
VPS29-204ENST00000548259 MRPL51Q4U2R6 128 aaKnown RBP9.94□□□□□ -0.82
VPS29-204ENST00000548259 C2orf82Q6UX34 121 aa9.94□□□□□ -0.82
VPS29-204ENST00000548259 LINC01551Q86U37 167 aa9.94□□□□□ -0.82
VPS29-204ENST00000548259 ZNF727A8MUV8 499 aa9.93□□□□□ -0.82
VPS29-204ENST00000548259 BLOC1S1P78537 153 aa9.93□□□□□ -0.82
VPS29-204ENST00000548259 LINC01561Q8N1V8 128 aa9.93□□□□□ -0.82
VPS29-204ENST00000548259 SMIM2Q9BVW6 85 aa9.93□□□□□ -0.82
VPS29-204ENST00000548259 NAT8BQ9UHF3 227 aa9.93□□□□□ -0.82
VPS29-204ENST00000548259 BCE1O60756 84 aa9.92□□□□□ -0.82
VPS29-204ENST00000548259 TPRXLQ17RH7 258 aa9.92□□□□□ -0.82
VPS29-204ENST00000548259 A0A1B0GW15 77 aa9.91□□□□□ -0.82
VPS29-204ENST00000548259 TNFRSF6BO95407 300 aa9.91□□□□□ -0.82
VPS29-204ENST00000548259 RAB5AP20339 215 aa9.91□□□□□ -0.82
VPS29-204ENST00000548259 FAM104AQ969W3 186 aa9.91□□□□□ -0.82
VPS29-204ENST00000548259 TP73-AS1Q9UF72 201 aa9.91□□□□□ -0.82
VPS29-204ENST00000548259 C6orf226Q5I0X4 101 aa9.9□□□□□ -0.82
VPS29-204ENST00000548259 LINC00242Q5T6M2 205 aa9.9□□□□□ -0.82
VPS29-204ENST00000548259 MRPL55Q7Z7F7 128 aaKnown RBP9.9□□□□□ -0.82
VPS29-204ENST00000548259 C2orf88Q9BSF0 95 aa9.9□□□□□ -0.82
VPS29-204ENST00000548259 EIF5A2Q9GZV4 153 aaKnown RBP9.9□□□□□ -0.82
VPS29-204ENST00000548259 IGLV7-46A0A075B6I9 117 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 F8W036 122 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 Q6ZN92 141 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 LINC00469Q8N7U9 141 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 LINC00304Q8N9R0 145 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 RETNLBQ9BQ08 111 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 PYGO1Q9Y3Y4 419 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 V9GYV3 84 aa9.89□□□□□ -0.83
VPS29-204ENST00000548259 S100A8P05109 93 aa9.88□□□□□ -0.83
VPS29-204ENST00000548259 CTAG1AP78358 180 aa9.88□□□□□ -0.83
VPS29-204ENST00000548259 TEX43Q6ZNM6 134 aa9.88□□□□□ -0.83
VPS29-204ENST00000548259 LINC00173Q6ZV60 143 aa9.88□□□□□ -0.83
VPS29-204ENST00000548259 TMEM141Q96I45 108 aa9.88□□□□□ -0.83
VPS29-204ENST00000548259 XAGE1AQ9HD64 81 aa9.88□□□□□ -0.83
VPS29-204ENST00000548259 TOMM7Q9P0U1 55 aa9.88□□□□□ -0.83
VPS29-204ENST00000548259 PPBPP02775 128 aa9.87□□□□□ -0.83
VPS29-204ENST00000548259 D6R8Y8 96 aa9.86□□□□□ -0.83
VPS29-204ENST00000548259 FAM229BQ4G0N7 80 aa9.86□□□□□ -0.83
VPS29-204ENST00000548259 FAM74A3Q4VXF1 159 aa9.86□□□□□ -0.83
VPS29-204ENST00000548259 IGLV4-3A0A075B6K6 122 aa9.85□□□□□ -0.83
VPS29-204ENST00000548259 IGKV2D-26A0A0A0MRZ7 120 aa9.85□□□□□ -0.83
VPS29-204ENST00000548259 Q8IZM0 81 aa9.85□□□□□ -0.83
VPS29-204ENST00000548259 ALKBH7Q9BT30 221 aaPredicted RBP9.85□□□□□ -0.83
VPS29-204ENST00000548259 UBE2AP49459 152 aa9.84□□□□□ -0.83
VPS29-204ENST00000548259 SMIM27A0A1W2PRY6 76 aa9.82□□□□□ -0.84
VPS29-204ENST00000548259 F8VRH5 84 aa9.82□□□□□ -0.84
VPS29-204ENST00000548259 NPYP01303 97 aa9.82□□□□□ -0.84
VPS29-204ENST00000548259 TCTE3Q8IZS6 198 aa9.82□□□□□ -0.84
VPS29-204ENST00000548259 VCX2Q9H322 139 aa9.82□□□□□ -0.84
VPS29-204ENST00000548259 ANAPC11Q9NYG5 84 aa9.82□□□□□ -0.84
VPS29-204ENST00000548259 RPL37AP8A6NKH3 93 aa9.81□□□□□ -0.84
VPS29-204ENST00000548259 LINC01547P58512 204 aaPredicted RBP9.81□□□□□ -0.84
VPS29-204ENST00000548259 SEC11AP67812 179 aa9.81□□□□□ -0.84
VPS29-204ENST00000548259 KRTAP13-2Q52LG2 175 aa9.81□□□□□ -0.84
VPS29-204ENST00000548259 ALKAL2Q6UX46 152 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms