RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 OR10D4PQ8NGN7 298 aa7.54□□□□□ -1.2
HDAC4-216ENST00000544989 C2orf48Q96LS8 159 aa7.54□□□□□ -1.2
HDAC4-216ENST00000544989 CYSLTR1Q9Y271 337 aa7.54□□□□□ -1.2
HDAC4-216ENST00000544989 PAPPA-AS1Q5QFB9 102 aa7.53□□□□□ -1.2
HDAC4-216ENST00000544989 C10orf91Q5T1B1 145 aa7.53□□□□□ -1.2
HDAC4-216ENST00000544989 Q6ZN92 141 aa7.53□□□□□ -1.2
HDAC4-216ENST00000544989 TMEM141Q96I45 108 aa7.53□□□□□ -1.2
HDAC4-216ENST00000544989 C2orf88Q9BSF0 95 aa7.53□□□□□ -1.2
HDAC4-216ENST00000544989 GNB1LQ9BYB4 327 aa7.53□□□□□ -1.2
HDAC4-216ENST00000544989 IGLV4-69A0A075B6H9 119 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 A0A087WYN8 130 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 TGIF2-C20orf24A0A0A6YYL0 155 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 LINC01549A6NIU2 74 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 PANO1I0J062 215 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 MT-ND6P03923 174 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 MAJINQ3KP22 176 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 C2orf66Q6UXQ4 117 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 TEX43Q6ZNM6 134 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 C5orf38Q86SI9 138 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 PRSS3P2Q8NHM4 247 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 C7orf33Q8WU49 177 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 CAMK2N2Q96S95 79 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 PLAC8Q9NZF1 115 aa7.52□□□□□ -1.21
HDAC4-216ENST00000544989 CARHSP1Q9Y2V2 147 aaKnown RBP7.52□□□□□ -1.21
HDAC4-216ENST00000544989 IGLV4-3A0A075B6K6 122 aa7.51□□□□□ -1.21
HDAC4-216ENST00000544989 IGHV3OR16-9A0A0B4J2B5 98 aa7.51□□□□□ -1.21
HDAC4-216ENST00000544989 NDUFA5Q16718 116 aa7.51□□□□□ -1.21
HDAC4-216ENST00000544989 RNF151Q2KHN1 245 aa7.51□□□□□ -1.21
HDAC4-216ENST00000544989 FAM104AQ969W3 186 aa7.51□□□□□ -1.21
HDAC4-216ENST00000544989 IGKV2-24A0A0C4DH68 120 aa7.5□□□□□ -1.21
HDAC4-216ENST00000544989 LOC107984640A0A0U1RRK4 108 aa7.5□□□□□ -1.21
HDAC4-216ENST00000544989 CHTF8P0CG12 524 aa7.5□□□□□ -1.21
HDAC4-216ENST00000544989 SPAG11BQ08648 103 aa7.5□□□□□ -1.21
HDAC4-216ENST00000544989 OPRPNQ99935 248 aaPredicted RBP7.5□□□□□ -1.21
HDAC4-216ENST00000544989 VCX2Q9H322 139 aa7.5□□□□□ -1.21
HDAC4-216ENST00000544989 RPS10P5Q9NQ39 176 aa7.5□□□□□ -1.21
HDAC4-216ENST00000544989 LRP1Q07954 4544 aaKnown RBP7.5□□□□□ -1.21
HDAC4-216ENST00000544989 J3QL48 77 aa7.49□□□□□ -1.21
HDAC4-216ENST00000544989 KRTAP10-4P60372 401 aaPredicted RBP7.49□□□□□ -1.21
HDAC4-216ENST00000544989 SEC11AP67812 179 aa7.49□□□□□ -1.21
HDAC4-216ENST00000544989 LINC01561Q8N1V8 128 aa7.49□□□□□ -1.21
HDAC4-216ENST00000544989 STPG4Q8N801 248 aa7.49□□□□□ -1.21
HDAC4-216ENST00000544989 ORAOV1Q8WV07 137 aa7.49□□□□□ -1.21
HDAC4-216ENST00000544989 LINC00526Q96FQ7 95 aa7.49□□□□□ -1.21
HDAC4-216ENST00000544989 FAT3Q8TDW7 4589 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 A0A087WZ39 114 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 A0A096LNI7 61 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 KRTAP29-1A8MX34 341 aaPredicted RBP7.48□□□□□ -1.21
HDAC4-216ENST00000544989 NDUFA1O15239 70 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 OXTP01178 125 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 Q6ZRU5 148 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 AMELXQ99217 191 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 TIMM17AQ99595 171 aa7.48□□□□□ -1.21
HDAC4-216ENST00000544989 IGIPA6NJ69 53 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 SNAPINO95295 136 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 UBE2D1P51668 147 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 PTTG1IPP53801 180 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 KIAA1644Q3SXP7 199 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 LINC00242Q5T6M2 205 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 SVBPQ8N300 66 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 TOMM6Q96B49 74 aa7.47□□□□□ -1.21
HDAC4-216ENST00000544989 MRPL35Q9NZE8 188 aaKnown RBP7.47□□□□□ -1.21
HDAC4-216ENST00000544989 FABP9Q0Z7S8 132 aa7.46□□□□□ -1.22
HDAC4-216ENST00000544989 ERASQ7Z444 233 aa7.46□□□□□ -1.22
HDAC4-216ENST00000544989 ALKBH7Q9BT30 221 aaPredicted RBP7.46□□□□□ -1.22
HDAC4-216ENST00000544989 LINC01546A6NGU7 62 aa7.45□□□□□ -1.22
HDAC4-216ENST00000544989 APOC3P02656 99 aa7.45□□□□□ -1.22
HDAC4-216ENST00000544989 HERVK_113P63121 156 aa7.45□□□□□ -1.22
HDAC4-216ENST00000544989 GAGE2BQ13066 116 aa7.45□□□□□ -1.22
HDAC4-216ENST00000544989 FAM19A3Q7Z5A8 133 aa7.45□□□□□ -1.22
HDAC4-216ENST00000544989 MRPL18Q9H0U6 180 aaKnown RBP7.45□□□□□ -1.22
HDAC4-216ENST00000544989 SMCO4Q9NRQ5 59 aa7.45□□□□□ -1.22
HDAC4-216ENST00000544989 RNF213Q63HN8 5207 aa7.45□□□□□ -1.22
HDAC4-216ENST00000544989 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.44□□□□□ -1.22
HDAC4-216ENST00000544989 RPL18AQ02543 176 aaKnown RBP7.44□□□□□ -1.22
HDAC4-216ENST00000544989 LINC00173Q6ZV60 143 aa7.44□□□□□ -1.22
HDAC4-216ENST00000544989 FA2HQ7L5A8 372 aa7.44□□□□□ -1.22
HDAC4-216ENST00000544989 SCGB3A1Q96QR1 104 aa7.44□□□□□ -1.22
HDAC4-216ENST00000544989 TRBV30A0A0K0K1B3 111 aa7.43□□□□□ -1.22
HDAC4-216ENST00000544989 PRSS2P07478 247 aa7.43□□□□□ -1.22
HDAC4-216ENST00000544989 TLX1NBP0CAT3 122 aa7.43□□□□□ -1.22
HDAC4-216ENST00000544989 GEMIN7Q9H840 131 aaKnown RBP7.43□□□□□ -1.22
HDAC4-216ENST00000544989 PACRGQ96M98 296 aaPredicted RBP7.42□□□□□ -1.22
HDAC4-216ENST00000544989 TRAPPC1Q9Y5R8 145 aa7.42□□□□□ -1.22
HDAC4-216ENST00000544989 KIAA0087Q14695 138 aa7.41□□□□□ -1.22
HDAC4-216ENST00000544989 RAB5BP61020 215 aa7.4□□□□□ -1.22
HDAC4-216ENST00000544989 CKS1BP61024 79 aa7.4□□□□□ -1.22
HDAC4-216ENST00000544989 PRR3P79522 188 aaKnown RBP7.4□□□□□ -1.22
HDAC4-216ENST00000544989 C6orf226Q5I0X4 101 aa7.4□□□□□ -1.22
HDAC4-216ENST00000544989 UNQ6190/PRO20217Q6UXQ8 127 aa7.4□□□□□ -1.22
HDAC4-216ENST00000544989 Q6ZRP5 223 aa7.4□□□□□ -1.22
HDAC4-216ENST00000544989 Q8IZM0 81 aa7.4□□□□□ -1.22
HDAC4-216ENST00000544989 TINCRA0A1B0GVN0 87 aa7.39□□□□□ -1.23
HDAC4-216ENST00000544989 CXCL5P42830 114 aa7.39□□□□□ -1.23
HDAC4-216ENST00000544989 C9orf116Q5BN46 136 aaPredicted RBP7.39□□□□□ -1.23
HDAC4-216ENST00000544989 ZC2HC1BQ5TFG8 222 aa7.39□□□□□ -1.23
HDAC4-216ENST00000544989 C6orf48Q9UBA6 75 aa7.39□□□□□ -1.23
HDAC4-216ENST00000544989 PKHD1L1Q86WI1 4243 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 A0A0J9YXV3 536 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 NDUFC2-KCTD14E9PQ53 114 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms