RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 UBE2D1P51668 147 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 PMVKQ15126 192 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 KRTAP26-1Q6PEX3 210 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 CD164L2Q6UWJ8 174 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 MAPKAPK5-AS1Q8N8E1 139 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 IFI27L1Q96BM0 104 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 CST9LQ9H4G1 147 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 HSPB8Q9UJY1 196 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 LOC100996750A0A140TA64 210 aa7.69□□□□□ -1.18
YBX3-213ENST00000542641 LINC00336Q6ZUF6 198 aa7.69□□□□□ -1.18
YBX3-213ENST00000542641 KRTAP4-6Q9BYQ5 205 aa7.69□□□□□ -1.18
YBX3-213ENST00000542641 DNAH17Q9UFH2 4485 aa7.69□□□□□ -1.18
YBX3-213ENST00000542641 FOXI1Q12951 378 aa7.68□□□□□ -1.18
YBX3-213ENST00000542641 LINC00242Q5T6M2 205 aa7.68□□□□□ -1.18
YBX3-213ENST00000542641 A0A087WTM6 91 aa7.67□□□□□ -1.18
YBX3-213ENST00000542641 LECT2O14960 151 aa7.67□□□□□ -1.18
YBX3-213ENST00000542641 SEC11AP67812 179 aa7.67□□□□□ -1.18
YBX3-213ENST00000542641 COX6A2Q02221 97 aa7.67□□□□□ -1.18
YBX3-213ENST00000542641 A0A0J9YXV3 536 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 LRCOL1A6NCL2 159 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 H0Y8G0 127 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 COX7A2LO14548 114 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 MALP21145 153 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 HERVK_113P63121 156 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 FAM19A3Q7Z5A8 133 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 C5orf38Q86SI9 138 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 PACRGQ96M98 296 aaPredicted RBP7.66□□□□□ -1.18
YBX3-213ENST00000542641 MAP1LC3CQ9BXW4 147 aa7.66□□□□□ -1.18
YBX3-213ENST00000542641 GEMIN7Q9H840 131 aaKnown RBP7.66□□□□□ -1.18
YBX3-213ENST00000542641 TMA7Q9Y2S6 64 aaKnown RBP7.66□□□□□ -1.18
YBX3-213ENST00000542641 FAT2Q9NYQ8 4349 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 TRAV12-1A0A0B4J245 112 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 IGHV3OR16-9A0A0B4J2B5 98 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 TINCRA0A1B0GVN0 87 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 USP17L23D6RBM5 183 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 S100A2P29034 98 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 SNRPEP62304 92 aaKnown RBP7.65□□□□□ -1.18
YBX3-213ENST00000542641 WFDC2Q14508 124 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 HIST3H2BBQ8N257 126 aa7.65□□□□□ -1.18
YBX3-213ENST00000542641 CHTOPQ9Y3Y2 248 aaKnown RBP7.65□□□□□ -1.18
YBX3-213ENST00000542641 CFAP161Q6P656 301 aa7.64□□□□□ -1.19
YBX3-213ENST00000542641 A0A087WZ39 114 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 C5orf52A6NGY3 159 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 IGLC3P0DOY3 106 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 C14orf177Q52M58 125 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 LINC00469Q8N7U9 141 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 Q8N814 137 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 CHAC1Q9BUX1 264 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 MRPL35Q9NZE8 188 aaKnown RBP7.63□□□□□ -1.19
YBX3-213ENST00000542641 CDKN2A-AS1Q9UH64 79 aa7.63□□□□□ -1.19
YBX3-213ENST00000542641 IGLV4-69A0A075B6H9 119 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 IGHV1-58A0A0C4DH39 117 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 F8VRH5 84 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 APOMO95445 188 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 ODF1Q14990 250 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 XP32Q5T750 250 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 C15orf56Q8N910 161 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 HIST1H2BLQ99880 126 aa7.62□□□□□ -1.19
YBX3-213ENST00000542641 IGLV5-45A0A087WSX0 123 aa7.61□□□□□ -1.19
YBX3-213ENST00000542641 hDV102S1A0JD36 115 aa7.61□□□□□ -1.19
YBX3-213ENST00000542641 SYS1-DBNDD2H3BUS1 97 aa7.61□□□□□ -1.19
YBX3-213ENST00000542641 C3orf79P0CE67 100 aa7.61□□□□□ -1.19
YBX3-213ENST00000542641 KRTDAPP60985 99 aa7.61□□□□□ -1.19
YBX3-213ENST00000542641 HIGD2BQ4VC39 106 aa7.61□□□□□ -1.19
YBX3-213ENST00000542641 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.6□□□□□ -1.19
YBX3-213ENST00000542641 IGHV3-64A0A075B6Q5 118 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 C11orf86A6NJI1 115 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 H3BRM9 83 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 TMEM170BQ5T4T1 132 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 PET117Q6UWS5 81 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 SPATA12Q7Z6I5 190 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 LINC01561Q8N1V8 128 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 PMCHL2Q9BQD1 86 aa7.6□□□□□ -1.19
YBX3-213ENST00000542641 GVQW2A0A096LPI5 108 aaPredicted RBP7.59□□□□□ -1.19
YBX3-213ENST00000542641 ZNF561-AS1K7EIQ3 104 aa7.59□□□□□ -1.19
YBX3-213ENST00000542641 ZNF22P17026 224 aaPredicted RBP7.59□□□□□ -1.19
YBX3-213ENST00000542641 OR10D4PQ8NGN7 298 aa7.59□□□□□ -1.19
YBX3-213ENST00000542641 ORAOV1Q8WV07 137 aa7.59□□□□□ -1.19
YBX3-213ENST00000542641 A0A1B0GVY2 172 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 DPM2O94777 84 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 SPINK8P0C7L1 97 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 PLNP26678 52 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 SPAG11BQ08648 103 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 NTN5Q8WTR8 489 aaPredicted RBP7.58□□□□□ -1.2
YBX3-213ENST00000542641 LINC00526Q96FQ7 95 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 DNAH11Q96DT5 4516 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 PKD1P98161 4303 aa7.58□□□□□ -1.2
YBX3-213ENST00000542641 SMIM1B2RUZ4 78 aa7.57□□□□□ -1.2
YBX3-213ENST00000542641 IGKCP01834 107 aa7.57□□□□□ -1.2
YBX3-213ENST00000542641 FUSP35637 526 aaKnown RBP eCLIP7.57□□□□□ -1.2
YBX3-213ENST00000542641 KRTAP10-2P60368 255 aa7.57□□□□□ -1.2
YBX3-213ENST00000542641 LINC01545Q5VT33 79 aa7.57□□□□□ -1.2
YBX3-213ENST00000542641 TOMM7Q9P0U1 55 aa7.57□□□□□ -1.2
YBX3-213ENST00000542641 IGLV5-52A0A0A0MRZ9 124 aa7.56□□□□□ -1.2
YBX3-213ENST00000542641 C20orf202A1L168 122 aa7.56□□□□□ -1.2
YBX3-213ENST00000542641 H3BS24 57 aa7.56□□□□□ -1.2
YBX3-213ENST00000542641 PRSS2P07478 247 aa7.56□□□□□ -1.2
YBX3-213ENST00000542641 C6orf226Q5I0X4 101 aa7.56□□□□□ -1.2
YBX3-213ENST00000542641 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.55□□□□□ -1.2
YBX3-213ENST00000542641 SLPIP03973 132 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms