RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PSMG3-AS1Q96PY0 264 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 DEFB121Q5J5C9 76 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 NCOA6Q14686 2063 aaPredicted RBP6.37□□□□□ -1.39
YBX3-208ENST00000540447 TRAV10A0A0B4J240 114 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 Q8IZM0 81 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 FAM215AQ9Y5M1 114 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 LINC00959A0A1B0GUT2 108 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 COX6A2Q02221 97 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 SMCR5Q8TEV8 140 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 WDR90Q96KV7 1748 aa6.37□□□□□ -1.39
YBX3-208ENST00000540447 CD164L2Q6UWJ8 174 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 C1orf64Q8NEQ6 169 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 TM2D3Q9BRN9 247 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 CDC42SE2Q9NRR3 84 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 AMELXQ99217 191 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 CYP4F30PQ9H0H9 118 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 MAP6D1Q9H9H5 199 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 A0A1B0GU69 56 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 MGAMO43451 1857 aa6.36□□□□□ -1.39
YBX3-208ENST00000540447 PRR3P79522 188 aaKnown RBP6.35□□□□□ -1.39
YBX3-208ENST00000540447 NUP210Q8TEM1 1887 aaPredicted RBP6.35□□□□□ -1.39
YBX3-208ENST00000540447 H3BS24 57 aa6.35□□□□□ -1.39
YBX3-208ENST00000540447 TNCP24821 2201 aa6.35□□□□□ -1.39
YBX3-208ENST00000540447 CACNA1BQ00975 2339 aa6.35□□□□□ -1.39
YBX3-208ENST00000540447 ADAMTS9Q9P2N4 1935 aa6.35□□□□□ -1.39
YBX3-208ENST00000540447 K7EQG2 157 aa6.35□□□□□ -1.39
YBX3-208ENST00000540447 SPINT4Q6UDR6 99 aa6.35□□□□□ -1.39
YBX3-208ENST00000540447 LINC01546A6NGU7 62 aa6.34□□□□□ -1.39
YBX3-208ENST00000540447 IGKV2-24A0A0C4DH68 120 aa6.34□□□□□ -1.39
YBX3-208ENST00000540447 CACNA1HO95180 2353 aa6.34□□□□□ -1.39
YBX3-208ENST00000540447 ATP11AUNQ6ZP68 121 aa6.34□□□□□ -1.39
YBX3-208ENST00000540447 KLLNB2CW77 178 aa6.34□□□□□ -1.4
YBX3-208ENST00000540447 LINC00337Q8N6G1 96 aa6.34□□□□□ -1.4
YBX3-208ENST00000540447 ZDBF2Q9HCK1 2354 aa6.33□□□□□ -1.4
YBX3-208ENST00000540447 DEFB116Q30KQ4 102 aa6.33□□□□□ -1.4
YBX3-208ENST00000540447 CACNA1EQ15878 2313 aa6.33□□□□□ -1.4
YBX3-208ENST00000540447 EP300Q09472 2414 aaPredicted RBP6.33□□□□□ -1.4
YBX3-208ENST00000540447 SPINK6Q6UWN8 80 aa6.33□□□□□ -1.4
YBX3-208ENST00000540447 RNF223E7ERA6 249 aa6.33□□□□□ -1.4
YBX3-208ENST00000540447 PRR15Q8IV56 129 aa6.33□□□□□ -1.4
YBX3-208ENST00000540447 MAPK1IP1LQ8NDC0 245 aa6.32□□□□□ -1.4
YBX3-208ENST00000540447 PLA2G2AP14555 144 aa6.32□□□□□ -1.4
YBX3-208ENST00000540447 DEFB4AO15263 64 aa6.32□□□□□ -1.4
YBX3-208ENST00000540447 CHCHD7Q9BUK0 85 aa6.32□□□□□ -1.4
YBX3-208ENST00000540447 TMEM131Q92545 1883 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 COX8CQ7Z4L0 72 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 LY6LH3BQJ8 138 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 SYCNQ0VAF6 134 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 FAM218AQ96MZ4 157 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 LINC00482Q8N8I6 264 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 SPATA3Q8NHX4 192 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 Q8N2B8 174 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 MSMPQ1L6U9 139 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 C9orf116Q5BN46 136 aaPredicted RBP6.31□□□□□ -1.4
YBX3-208ENST00000540447 SRCAPQ6ZRS2 3230 aa6.31□□□□□ -1.4
YBX3-208ENST00000540447 RPL37AP8A6NKH3 93 aa6.3□□□□□ -1.4
YBX3-208ENST00000540447 BRI3O95415 125 aa6.3□□□□□ -1.4
YBX3-208ENST00000540447 KLKP1Q107X0 134 aa6.3□□□□□ -1.4
YBX3-208ENST00000540447 PIP4P1Q86T03 277 aa6.3□□□□□ -1.4
YBX3-208ENST00000540447 F8W735 103 aaPredicted RBP6.29□□□□□ -1.4
YBX3-208ENST00000540447 ERC2-IT1O76042 136 aa6.29□□□□□ -1.4
YBX3-208ENST00000540447 NUP210LQ5VU65 1888 aa6.29□□□□□ -1.4
YBX3-208ENST00000540447 FSHBP01225 129 aa6.29□□□□□ -1.4
YBX3-208ENST00000540447 LY6G6EA0A0G2JKS1 128 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 CYSRT1A8MQ03 144 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 H7BZZ5 65 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 U3KQA8 63 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 DEFB135Q30KP9 77 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 FNDC1Q4ZHG4 1894 aaPredicted RBP6.28□□□□□ -1.4
YBX3-208ENST00000540447 TRAV22A0A0B4J277 110 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 LOC100131303A0A0U1RQF7 123 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 PRRC2AP48634 2157 aaKnown RBP6.28□□□□□ -1.4
YBX3-208ENST00000540447 ODF3BA8MYP8 253 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 ATG2AQ2TAZ0 1938 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 Q96MF0 132 aa6.28□□□□□ -1.4
YBX3-208ENST00000540447 SPINK1P00995 79 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 GRNP28799 593 aaKnown RBP6.27□□□□□ -1.41
YBX3-208ENST00000540447 Q6ZQT0 140 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 C4orf3Q8WVX3 66 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 RBM12B-AS1Q9P1G2 102 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 A8MTW9 85 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 ZFP36P26651 326 aaKnown RBP6.27□□□□□ -1.41
YBX3-208ENST00000540447 IGFL3Q6UXB1 125 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 UNQ6190/PRO20217Q6UXQ8 127 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 IGHV6-1A0A0B4J1U7 121 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 H3BPC8 53 aa6.27□□□□□ -1.41
YBX3-208ENST00000540447 A0A087WSZ3 146 aa6.26□□□□□ -1.41
YBX3-208ENST00000540447 FSTL3O95633 263 aa6.26□□□□□ -1.41
YBX3-208ENST00000540447 KPRPQ5T749 579 aaPredicted RBP6.26□□□□□ -1.41
YBX3-208ENST00000540447 DAZAP2Q15038 168 aaPredicted RBP6.26□□□□□ -1.41
YBX3-208ENST00000540447 C9orf66Q5T8R8 295 aa6.25□□□□□ -1.41
YBX3-208ENST00000540447 LOC101927531A0A1B0GV80 90 aa6.25□□□□□ -1.41
YBX3-208ENST00000540447 ACYP2P14621 99 aa6.25□□□□□ -1.41
YBX3-208ENST00000540447 LOC110117498A0A087WWA1 95 aa6.25□□□□□ -1.41
YBX3-208ENST00000540447 Q6ZTC4 211 aa6.25□□□□□ -1.41
YBX3-208ENST00000540447 GVINP1Q7Z2Y8 2422 aa6.25□□□□□ -1.41
YBX3-208ENST00000540447 A6NDX4 124 aa6.25□□□□□ -1.41
YBX3-208ENST00000540447 MED13LQ71F56 2210 aa6.24□□□□□ -1.41
YBX3-208ENST00000540447 C2orf16Q68DN1 1984 aa6.24□□□□□ -1.41
YBX3-208ENST00000540447 IGLV9-49A0A0B4J1Y8 123 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms