RNA–Protein interactions for RNA: ENST00000540090.5

LPCAT3-210, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 974 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-210ENST00000540090 GAGE2EQ4V326 116 aa11.92□□□□□ -0.5
LPCAT3-210ENST00000540090 SMDT1Q9H4I9 107 aa11.92□□□□□ -0.5
LPCAT3-210ENST00000540090 GAGE2DQ9UEU5 116 aa11.92□□□□□ -0.5
LPCAT3-210ENST00000540090 RIGQ13278 110 aa11.91□□□□□ -0.5
LPCAT3-210ENST00000540090 OSTCQ9NRP0 149 aa11.91□□□□□ -0.5
LPCAT3-210ENST00000540090 CARHSP1Q9Y2V2 147 aaKnown RBP11.91□□□□□ -0.5
LPCAT3-210ENST00000540090 LINC01551Q86U37 167 aa11.9□□□□□ -0.5
LPCAT3-210ENST00000540090 FAT4Q6V0I7 4981 aa11.9□□□□□ -0.5
LPCAT3-210ENST00000540090 CEBPGP53567 150 aa11.89□□□□□ -0.51
LPCAT3-210ENST00000540090 UBE2BP63146 152 aa11.89□□□□□ -0.51
LPCAT3-210ENST00000540090 M0QXV9 152 aa11.88□□□□□ -0.51
LPCAT3-210ENST00000540090 RPL39P62891 51 aaKnown RBP11.88□□□□□ -0.51
LPCAT3-210ENST00000540090 C20orf78Q9BR46 151 aa11.88□□□□□ -0.51
LPCAT3-210ENST00000540090 TRBV24-1A0A075B6N3 115 aa11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 RPL32P62910 135 aaKnown RBP11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 MRPS36P82909 103 aaKnown RBP11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 KIAA0087Q14695 138 aa11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 MRPL51Q4U2R6 128 aaKnown RBP11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 FAM104BQ5XKR9 115 aa11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 SMIM7Q9BQ49 75 aa11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 SPANXA1Q9NS26 97 aa11.87□□□□□ -0.51
LPCAT3-210ENST00000540090 LINC00862A6NCI5 91 aa11.86□□□□□ -0.51
LPCAT3-210ENST00000540090 TCAPO15273 167 aa11.86□□□□□ -0.51
LPCAT3-210ENST00000540090 V9GYV3 84 aa11.86□□□□□ -0.51
LPCAT3-210ENST00000540090 BLOC1S1P78537 153 aa11.85□□□□□ -0.51
LPCAT3-210ENST00000540090 LCE2AQ5TA79 106 aaPredicted RBP11.85□□□□□ -0.51
LPCAT3-210ENST00000540090 ZNF861PO60384 105 aa11.84□□□□□ -0.51
LPCAT3-210ENST00000540090 HBBP68871 147 aa11.84□□□□□ -0.51
LPCAT3-210ENST00000540090 TCTE3Q8IZS6 198 aa11.84□□□□□ -0.51
LPCAT3-210ENST00000540090 TRBV30A0A0K0K1B3 111 aa11.83□□□□□ -0.52
LPCAT3-210ENST00000540090 IFITM10A6NMD0 228 aa11.83□□□□□ -0.52
LPCAT3-210ENST00000540090 NDUFC2-KCTD14E9PQ53 114 aa11.83□□□□□ -0.52
LPCAT3-210ENST00000540090 C9orf129Q5T035 196 aaKnown RBP11.83□□□□□ -0.52
LPCAT3-210ENST00000540090 ZNF727A8MUV8 499 aa11.82□□□□□ -0.52
LPCAT3-210ENST00000540090 NAT8BQ9UHF3 227 aa11.82□□□□□ -0.52
LPCAT3-210ENST00000540090 TGIF2-C20orf24A0A0A6YYL0 155 aa11.81□□□□□ -0.52
LPCAT3-210ENST00000540090 TNFRSF6BO95407 300 aa11.81□□□□□ -0.52
LPCAT3-210ENST00000540090 TSPAN13O95857 204 aa11.81□□□□□ -0.52
LPCAT3-210ENST00000540090 CKS2P33552 79 aa11.81□□□□□ -0.52
LPCAT3-210ENST00000540090 C2orf82Q6UX34 121 aa11.8□□□□□ -0.52
LPCAT3-210ENST00000540090 SMIM2Q9BVW6 85 aa11.8□□□□□ -0.52
LPCAT3-210ENST00000540090 EIF5A2Q9GZV4 153 aaKnown RBP11.8□□□□□ -0.52
LPCAT3-210ENST00000540090 FAM74A3Q4VXF1 159 aa11.78□□□□□ -0.52
LPCAT3-210ENST00000540090 LINC00242Q5T6M2 205 aa11.78□□□□□ -0.52
LPCAT3-210ENST00000540090 ALKAL2Q6UX46 152 aa11.78□□□□□ -0.52
LPCAT3-210ENST00000540090 PACRGQ96M98 296 aaPredicted RBP11.78□□□□□ -0.52
LPCAT3-210ENST00000540090 NUPR1O60356 82 aa11.77□□□□□ -0.53
LPCAT3-210ENST00000540090 SRP19P09132 144 aaKnown RBP11.77□□□□□ -0.53
LPCAT3-210ENST00000540090 C22orf24Q9Y442 160 aa11.76□□□□□ -0.53
LPCAT3-210ENST00000540090 MUC17Q685J3 4493 aa11.75□□□□□ -0.53
LPCAT3-210ENST00000540090 KRTAP9-6A0A140TA67 174 aa11.75□□□□□ -0.53
LPCAT3-210ENST00000540090 A0A1B0GW15 77 aa11.75□□□□□ -0.53
LPCAT3-210ENST00000540090 SMIM27A0A1W2PRY6 76 aa11.75□□□□□ -0.53
LPCAT3-210ENST00000540090 LINC01561Q8N1V8 128 aa11.75□□□□□ -0.53
LPCAT3-210ENST00000540090 PYGO1Q9Y3Y4 419 aa11.75□□□□□ -0.53
LPCAT3-210ENST00000540090 A0A087X002 238 aa11.74□□□□□ -0.53
LPCAT3-210ENST00000540090 D6R8Y8 96 aa11.74□□□□□ -0.53
LPCAT3-210ENST00000540090 IFI27P40305 119 aaPredicted RBP11.74□□□□□ -0.53
LPCAT3-210ENST00000540090 NPYP01303 97 aa11.73□□□□□ -0.53
LPCAT3-210ENST00000540090 CTDSP1Q9GZU7 261 aa11.73□□□□□ -0.53
LPCAT3-210ENST00000540090 IGLV4-3A0A075B6K6 122 aa11.72□□□□□ -0.53
LPCAT3-210ENST00000540090 RPL23P62829 140 aaKnown RBP11.72□□□□□ -0.53
LPCAT3-210ENST00000540090 LBHQ53QV2 105 aaPredicted RBP11.72□□□□□ -0.53
LPCAT3-210ENST00000540090 TYMSOSQ8TAI1 123 aa11.71□□□□□ -0.53
LPCAT3-210ENST00000540090 F8W036 122 aa11.7□□□□□ -0.54
LPCAT3-210ENST00000540090 PPBPP02775 128 aa11.7□□□□□ -0.54
LPCAT3-210ENST00000540090 CRYGAP11844 174 aa11.7□□□□□ -0.54
LPCAT3-210ENST00000540090 RAB5AP20339 215 aa11.7□□□□□ -0.54
LPCAT3-210ENST00000540090 LINC00469Q8N7U9 141 aa11.7□□□□□ -0.54
LPCAT3-210ENST00000540090 TMEM141Q96I45 108 aa11.7□□□□□ -0.54
LPCAT3-210ENST00000540090 RPL28P46779 137 aaKnown RBP11.69□□□□□ -0.54
LPCAT3-210ENST00000540090 S100A8P05109 93 aa11.68□□□□□ -0.54
LPCAT3-210ENST00000540090 TEX43Q6ZNM6 134 aa11.68□□□□□ -0.54
LPCAT3-210ENST00000540090 XAGE1AQ9HD64 81 aa11.68□□□□□ -0.54
LPCAT3-210ENST00000540090 BCE1O60756 84 aa11.67□□□□□ -0.54
LPCAT3-210ENST00000540090 PRSS2P07478 247 aa11.67□□□□□ -0.54
LPCAT3-210ENST00000540090 CKS1BP61024 79 aa11.67□□□□□ -0.54
LPCAT3-210ENST00000540090 ADIRFQ15847 76 aa11.67□□□□□ -0.54
LPCAT3-210ENST00000540090 MRPL54Q6P161 138 aaKnown RBP11.67□□□□□ -0.54
LPCAT3-210ENST00000540090 Q6ZN92 141 aa11.67□□□□□ -0.54
LPCAT3-210ENST00000540090 TP73-AS1Q9UF72 201 aa11.67□□□□□ -0.54
LPCAT3-210ENST00000540090 A0A1B0GXF2 115 aa11.66□□□□□ -0.54
LPCAT3-210ENST00000540090 C6orf226Q5I0X4 101 aa11.66□□□□□ -0.54
LPCAT3-210ENST00000540090 TOMM7Q9P0U1 55 aa11.66□□□□□ -0.54
LPCAT3-210ENST00000540090 TMEM136Q6ZRR5 245 aa11.65□□□□□ -0.54
LPCAT3-210ENST00000540090 MRPL55Q7Z7F7 128 aaKnown RBP11.65□□□□□ -0.54
LPCAT3-210ENST00000540090 Q8IZM0 81 aa11.65□□□□□ -0.54
LPCAT3-210ENST00000540090 ORMDL3Q8N138 153 aa11.65□□□□□ -0.54
LPCAT3-210ENST00000540090 C2orf88Q9BSF0 95 aa11.65□□□□□ -0.54
LPCAT3-210ENST00000540090 NAT8Q9UHE5 227 aa11.65□□□□□ -0.54
LPCAT3-210ENST00000540090 ZC2HC1BQ5TFG8 222 aa11.64□□□□□ -0.55
LPCAT3-210ENST00000540090 PRSS47A8MTI9 375 aa11.63□□□□□ -0.55
LPCAT3-210ENST00000540090 LINC00173Q6ZV60 143 aa11.63□□□□□ -0.55
LPCAT3-210ENST00000540090 PRELID3AQ96N28 172 aa11.63□□□□□ -0.55
LPCAT3-210ENST00000540090 AMELXQ99217 191 aa11.63□□□□□ -0.55
LPCAT3-210ENST00000540090 ALKBH7Q9BT30 221 aaPredicted RBP11.63□□□□□ -0.55
LPCAT3-210ENST00000540090 ANAPC11Q9NYG5 84 aa11.63□□□□□ -0.55
LPCAT3-210ENST00000540090 C9JQL5 133 aa11.61□□□□□ -0.55
LPCAT3-210ENST00000540090 KRTAP13-2Q52LG2 175 aa11.61□□□□□ -0.55
LPCAT3-210ENST00000540090 FAM19A3Q7Z5A8 133 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms