RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 PRO3102Q9H379 93 aa7.32□□□□□ -1.24
COL4A6-208ENST00000538570 IGLV2-11P01706 119 aa7.32□□□□□ -1.24
COL4A6-208ENST00000538570 IGHV4-30-4P0DP06 118 aa7.32□□□□□ -1.24
COL4A6-208ENST00000538570 LINC00959A0A1B0GUT2 108 aa7.32□□□□□ -1.24
COL4A6-208ENST00000538570 C19orf84I3L1E1 186 aa7.32□□□□□ -1.24
COL4A6-208ENST00000538570 LINC00310P59036 64 aa7.32□□□□□ -1.24
COL4A6-208ENST00000538570 Q6ZSV7 163 aa7.32□□□□□ -1.24
COL4A6-208ENST00000538570 RNASE3P12724 160 aaKnown RBP7.31□□□□□ -1.24
COL4A6-208ENST00000538570 CRIP2P52943 208 aaPredicted RBP7.31□□□□□ -1.24
COL4A6-208ENST00000538570 LTBP2Q14767 1821 aa7.31□□□□□ -1.24
COL4A6-208ENST00000538570 LELP1Q5T871 98 aa7.31□□□□□ -1.24
COL4A6-208ENST00000538570 COL4A3Q01955 1670 aa7.31□□□□□ -1.24
COL4A6-208ENST00000538570 TNCP24821 2201 aa7.31□□□□□ -1.24
COL4A6-208ENST00000538570 CRYGAP11844 174 aa7.31□□□□□ -1.24
COL4A6-208ENST00000538570 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.31□□□□□ -1.24
COL4A6-208ENST00000538570 CSPG4Q6UVK1 2322 aa7.31□□□□□ -1.24
COL4A6-208ENST00000538570 C2orf16Q68DN1 1984 aa7.3□□□□□ -1.24
COL4A6-208ENST00000538570 LIMD2Q9BT23 127 aa7.3□□□□□ -1.24
COL4A6-208ENST00000538570 PIEZO1Q92508 2521 aa7.3□□□□□ -1.24
COL4A6-208ENST00000538570 RPL37AP8A6NKH3 93 aa7.3□□□□□ -1.24
COL4A6-208ENST00000538570 ZNF73O43830 326 aaPredicted RBP7.3□□□□□ -1.24
COL4A6-208ENST00000538570 CRIP3Q6Q6R5 217 aa7.3□□□□□ -1.24
COL4A6-208ENST00000538570 INAFM1C9JVW0 142 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 ADAMTS9Q9P2N4 1935 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 KPRPQ5T749 579 aaPredicted RBP7.29□□□□□ -1.24
COL4A6-208ENST00000538570 ZNF106Q9H2Y7 1883 aaKnown RBP7.29□□□□□ -1.24
COL4A6-208ENST00000538570 OTOGLQ3ZCN5 2332 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 IGLV9-49A0A0B4J1Y8 123 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 LOC100131303A0A0U1RQF7 123 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 UBE2D3P61077 147 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 C10orf99Q6UWK7 81 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 MUC7Q8TAX7 377 aa7.29□□□□□ -1.24
COL4A6-208ENST00000538570 ATRXP46100 2492 aa7.28□□□□□ -1.24
COL4A6-208ENST00000538570 PSMG3-AS1Q96PY0 264 aa7.28□□□□□ -1.24
COL4A6-208ENST00000538570 PRR9Q5T870 116 aa7.28□□□□□ -1.24
COL4A6-208ENST00000538570 IGLV2-18A0A075B6J9 118 aa7.28□□□□□ -1.24
COL4A6-208ENST00000538570 POLR2KP53803 58 aaKnown RBP7.28□□□□□ -1.24
COL4A6-208ENST00000538570 SPINT4Q6UDR6 99 aa7.28□□□□□ -1.24
COL4A6-208ENST00000538570 Q8IZM0 81 aa7.28□□□□□ -1.24
COL4A6-208ENST00000538570 NCOA6Q14686 2063 aaPredicted RBP7.28□□□□□ -1.24
COL4A6-208ENST00000538570 KLLNB2CW77 178 aa7.27□□□□□ -1.24
COL4A6-208ENST00000538570 LINC01561Q8N1V8 128 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 ZNF702PQ9H963 129 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 HIVEP2P31629 2446 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 UBE2D2P62837 147 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 C8orf87E5RJ46 101 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 LINC00208Q96KT6 92 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 FREM1Q5H8C1 2179 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 C11orf21Q9P2W6 132 aa7.27□□□□□ -1.25
COL4A6-208ENST00000538570 LINC00474Q9P2X8 69 aa7.26□□□□□ -1.25
COL4A6-208ENST00000538570 C10orf25Q5T742 122 aa7.26□□□□□ -1.25
COL4A6-208ENST00000538570 C11orf71Q6IPW1 123 aa7.26□□□□□ -1.25
COL4A6-208ENST00000538570 TMEM254Q8TBM7 123 aa7.26□□□□□ -1.25
COL4A6-208ENST00000538570 PTPN13Q12923 2485 aa7.26□□□□□ -1.25
COL4A6-208ENST00000538570 M0R2N4 97 aa7.25□□□□□ -1.25
COL4A6-208ENST00000538570 NTM-AS1Q6ZSK4 140 aa7.25□□□□□ -1.25
COL4A6-208ENST00000538570 URB1-AS1Q96HZ7 61 aa7.25□□□□□ -1.25
COL4A6-208ENST00000538570 CDC42SE2Q9NRR3 84 aa7.25□□□□□ -1.25
COL4A6-208ENST00000538570 SONP18583 2426 aaKnown RBP7.25□□□□□ -1.25
COL4A6-208ENST00000538570 KIAA1549Q9HCM3 1950 aa7.25□□□□□ -1.25
COL4A6-208ENST00000538570 Q6ZVQ6 151 aa7.24□□□□□ -1.25
COL4A6-208ENST00000538570 KIAA1549LQ6ZVL6 1849 aa7.24□□□□□ -1.25
COL4A6-208ENST00000538570 TRBV10-3A0A0K0K1G6 114 aa7.24□□□□□ -1.25
COL4A6-208ENST00000538570 GAS8-AS1O95177 125 aa7.24□□□□□ -1.25
COL4A6-208ENST00000538570 MRGPRG-AS1Q2M3A8 158 aa7.24□□□□□ -1.25
COL4A6-208ENST00000538570 CYSRT1A8MQ03 144 aa7.24□□□□□ -1.25
COL4A6-208ENST00000538570 Q8N3U1 123 aa7.24□□□□□ -1.25
COL4A6-208ENST00000538570 H3BS24 57 aa7.23□□□□□ -1.25
COL4A6-208ENST00000538570 C18orf65Q6ZTR6 163 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 HCG22E2RYF7 251 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 NCOR2Q9Y618 2525 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 ALPK3Q96L96 1907 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 IGIPA6NJ69 53 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 PRM2P04554 102 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 PCDH15Q96QU1 1955 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 Q8N814 137 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 IGLV1-40P01703 118 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 LINC01006Q8NI28 216 aa7.22□□□□□ -1.25
COL4A6-208ENST00000538570 CNFNQ9BYD5 112 aa7.21□□□□□ -1.25
COL4A6-208ENST00000538570 FAM19A4Q96LR4 140 aa7.21□□□□□ -1.26
COL4A6-208ENST00000538570 RETNLBQ9BQ08 111 aa7.21□□□□□ -1.26
COL4A6-208ENST00000538570 MYO18BQ8IUG5 2567 aa7.21□□□□□ -1.26
COL4A6-208ENST00000538570 LY6G6DO95868 133 aa7.21□□□□□ -1.26
COL4A6-208ENST00000538570 C1orf137Q5JT78 98 aa7.2□□□□□ -1.26
COL4A6-208ENST00000538570 LINC00242Q5T6M2 205 aa7.2□□□□□ -1.26
COL4A6-208ENST00000538570 A0A087WYN8 130 aa7.2□□□□□ -1.26
COL4A6-208ENST00000538570 NUP210LQ5VU65 1888 aa7.2□□□□□ -1.26
COL4A6-208ENST00000538570 RPL28P46779 137 aaKnown RBP7.19□□□□□ -1.26
COL4A6-208ENST00000538570 EGFEM1PQ0D2K5 195 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 NAV2Q8IVL1 2488 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 LY6G6CO95867 125 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 REG3GQ6UW15 175 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 UNQ6190/PRO20217Q6UXQ8 127 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 TANC2Q9HCD6 1990 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 PCOTHQ58A44 107 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 WNK1Q9H4A3 2382 aa7.19□□□□□ -1.26
COL4A6-208ENST00000538570 SMIM1B2RUZ4 78 aa7.18□□□□□ -1.26
COL4A6-208ENST00000538570 LINC00336Q6ZUF6 198 aa7.18□□□□□ -1.26
COL4A6-208ENST00000538570 Q9UF83 564 aa7.18□□□□□ -1.26
COL4A6-208ENST00000538570 MED12LQ86YW9 2145 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms