RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DEFB130AP0DP74 79 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 RPL24P83731 157 aaKnown RBP8.34□□□□□ -1.07
CLIP1-208ENST00000537004 FHL2Q14192 279 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 RNASE13Q5GAN3 156 aaKnown RBP8.34□□□□□ -1.07
CLIP1-208ENST00000537004 LINC00612Q8N6U2 182 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 NAA38Q9BRA0 125 aaKnown RBP8.34□□□□□ -1.07
CLIP1-208ENST00000537004 LOC100131303A0A0U1RQF7 123 aa8.33□□□□□ -1.08
CLIP1-208ENST00000537004 TEX48A0A1B0GUV7 120 aa8.33□□□□□ -1.08
CLIP1-208ENST00000537004 FAM222AQ5U5X8 452 aa8.33□□□□□ -1.08
CLIP1-208ENST00000537004 NTM-AS1Q6ZSK4 140 aa8.33□□□□□ -1.08
CLIP1-208ENST00000537004 F8W1H4 67 aa8.32□□□□□ -1.08
CLIP1-208ENST00000537004 Q6ZUT4 128 aa8.32□□□□□ -1.08
CLIP1-208ENST00000537004 TIMM21Q9BVV7 248 aa8.32□□□□□ -1.08
CLIP1-208ENST00000537004 GAGE12HA6NDE8 117 aa8.32□□□□□ -1.08
CLIP1-208ENST00000537004 ZNF815PA8K554 130 aa8.32□□□□□ -1.08
CLIP1-208ENST00000537004 ZNF22P17026 224 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-208ENST00000537004 VPS13DQ5THJ4 4388 aa8.31□□□□□ -1.08
CLIP1-208ENST00000537004 DEFB131BA0A096LNP1 70 aa8.31□□□□□ -1.08
CLIP1-208ENST00000537004 TRAV10A0A0B4J240 114 aa8.31□□□□□ -1.08
CLIP1-208ENST00000537004 TMEM223A0PJW6 202 aa8.31□□□□□ -1.08
CLIP1-208ENST00000537004 SPART-AS1P0CW21 52 aa8.31□□□□□ -1.08
CLIP1-208ENST00000537004 MRPS36P82909 103 aaKnown RBP8.31□□□□□ -1.08
CLIP1-208ENST00000537004 DGAT2L7PQ6IED9 249 aa8.31□□□□□ -1.08
CLIP1-208ENST00000537004 GTSF1LQ9H1H1 148 aa8.31□□□□□ -1.08
CLIP1-208ENST00000537004 LINC00694P0DN24 101 aa8.3□□□□□ -1.08
CLIP1-208ENST00000537004 GCSHP23434 173 aa8.3□□□□□ -1.08
CLIP1-208ENST00000537004 TSPEAR-AS2P59090 65 aa8.3□□□□□ -1.08
CLIP1-208ENST00000537004 SMAGPQ0VAQ4 97 aa8.3□□□□□ -1.08
CLIP1-208ENST00000537004 APLNQ9ULZ1 77 aa8.3□□□□□ -1.08
CLIP1-208ENST00000537004 LYRM9A8MSI8 78 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 J3QQQ9 107 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 TAL2Q16559 108 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 SPANXB1Q9NS25 103 aaPredicted RBP8.29□□□□□ -1.08
CLIP1-208ENST00000537004 TINCRA0A1B0GVN0 87 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 LEPROTO15243 131 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 HTN3P15516 51 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 FXYD2P54710 66 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 SCGB1D4Q6XE38 83 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 CEND1Q8N111 149 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 HIST1H4GQ99525 98 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 TMEM243Q9BU79 118 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 TM2D2Q9BX73 214 aa8.29□□□□□ -1.08
CLIP1-208ENST00000537004 CSDC2Q9Y534 153 aaKnown RBP8.29□□□□□ -1.08
CLIP1-208ENST00000537004 LGALS3P17931 250 aaKnown RBP8.28□□□□□ -1.08
CLIP1-208ENST00000537004 PLEKHB2Q96CS7 222 aa8.28□□□□□ -1.08
CLIP1-208ENST00000537004 IGHV3-64A0A075B6Q5 118 aa8.27□□□□□ -1.09
CLIP1-208ENST00000537004 UBE2D1P51668 147 aa8.27□□□□□ -1.09
CLIP1-208ENST00000537004 UBE2L6O14933 153 aa8.27□□□□□ -1.09
CLIP1-208ENST00000537004 MTURNQ8N3F0 131 aa8.27□□□□□ -1.09
CLIP1-208ENST00000537004 DAD1P61803 113 aa8.26□□□□□ -1.09
CLIP1-208ENST00000537004 GEMIN7Q9H840 131 aaKnown RBP8.26□□□□□ -1.09
CLIP1-208ENST00000537004 H7C423 109 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 GYPEP15421 78 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 CKS1BP61024 79 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 PRO0255Q9UI72 69 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 TRBV6-8A0A0A6YYG3 113 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 A0A0J9YY99 117 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 IGHV3-30-3P0DP02 117 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 CDC42SE2Q9NRR3 84 aa8.25□□□□□ -1.09
CLIP1-208ENST00000537004 TRAV8-3A0A0A6YYJ7 113 aa8.24□□□□□ -1.09
CLIP1-208ENST00000537004 WFDC2Q14508 124 aa8.24□□□□□ -1.09
CLIP1-208ENST00000537004 TMEM101Q96IK0 257 aa8.24□□□□□ -1.09
CLIP1-208ENST00000537004 IGLV5-45A0A087WSX0 123 aa8.24□□□□□ -1.09
CLIP1-208ENST00000537004 IGHV1-58A0A0C4DH39 117 aa8.24□□□□□ -1.09
CLIP1-208ENST00000537004 TIRAPP58753 221 aa8.24□□□□□ -1.09
CLIP1-208ENST00000537004 SRSF9Q13242 221 aaKnown RBP eCLIP8.24□□□□□ -1.09
CLIP1-208ENST00000537004 ATP6V0E2Q8NHE4 81 aa8.24□□□□□ -1.09
CLIP1-208ENST00000537004 NHP2Q9NX24 153 aaKnown RBP8.24□□□□□ -1.09
CLIP1-208ENST00000537004 K7ERJ3 54 aa8.23□□□□□ -1.09
CLIP1-208ENST00000537004 SPINK8P0C7L1 97 aa8.23□□□□□ -1.09
CLIP1-208ENST00000537004 GAGE6Q13070 117 aa8.23□□□□□ -1.09
CLIP1-208ENST00000537004 LINC00242Q5T6M2 205 aa8.23□□□□□ -1.09
CLIP1-208ENST00000537004 FAM19A3Q7Z5A8 133 aa8.23□□□□□ -1.09
CLIP1-208ENST00000537004 VSIG2Q96IQ7 327 aa8.23□□□□□ -1.09
CLIP1-208ENST00000537004 CDKN2A-AS1Q9UH64 79 aa8.23□□□□□ -1.09
CLIP1-208ENST00000537004 BIRC6Q9NR09 4857 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 TRAV13-1A0A0B4J241 112 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 PAX4O43316 350 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 HERVK_113P63121 156 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 COX6A2Q02221 97 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 CHCHD5Q9BSY4 110 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 DNAH10Q8IVF4 4471 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 ETDBQ3ZM63 59 aa8.22□□□□□ -1.09
CLIP1-208ENST00000537004 ATP5G1P05496 136 aa8.21□□□□□ -1.1
CLIP1-208ENST00000537004 PRO0461Q9UI25 63 aa8.21□□□□□ -1.1
CLIP1-208ENST00000537004 DNAH2Q9P225 4427 aa8.21□□□□□ -1.1
CLIP1-208ENST00000537004 F5H768 121 aa8.2□□□□□ -1.1
CLIP1-208ENST00000537004 H3BMG7 143 aa8.2□□□□□ -1.1
CLIP1-208ENST00000537004 C10orf126Q8N4M7 172 aa8.2□□□□□ -1.1
CLIP1-208ENST00000537004 SH2D6Q7Z4S9 175 aa8.2□□□□□ -1.1
CLIP1-208ENST00000537004 IGLV4-60A0A075B6I1 120 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 TRAV26-1A0A087WT03 109 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 A0A096LPF7 62 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 A0A1B0GWB2 263 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 NDUFA12Q9UI09 145 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 DNAH6Q9C0G6 4158 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 A0A0J9YXY3 114 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 IGHV3-30P01768 117 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 IGHV3-30-5P0DP03 117 aa8.19□□□□□ -1.1
CLIP1-208ENST00000537004 HECTD4Q9Y4D8 3996 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms