RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 IGHV3-16A0A0C4DH30 117 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 LMO4P61968 165 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 RPL18AQ02543 176 aaKnown RBP4.78□□□□□ -1.64
USP28-202ENST00000535607 ATP5EP2Q5VTU8 51 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 SERP2Q8N6R1 65 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 CLEC2BQ92478 149 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 DAZ1Q9NQZ3 744 aaKnown RBP4.78□□□□□ -1.64
USP28-202ENST00000535607 CREBBPQ92793 2442 aa4.78□□□□□ -1.64
USP28-202ENST00000535607 HECTD1Q9ULT8 2610 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 AKAP9Q99996 3911 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 A0A096LNT2 108 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 IGHV4-61A0A0C4DH41 118 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 B4DSR2 109 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 H0YGX0 51 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 MSMBP08118 114 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 Q6JHZ5 121 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 FAM19A5Q7Z5A7 132 aaPredicted RBP4.77□□□□□ -1.65
USP28-202ENST00000535607 MRAPQ8TCY5 172 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 VPS13CQ709C8 3753 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 PDZD2O15018 2839 aa4.77□□□□□ -1.65
USP28-202ENST00000535607 SPG11Q96JI7 2443 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 TRAV12-3A0A0B4J271 114 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 TRAV25A0A0B4J276 109 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 J3QLI3 93 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 NDUFC2O95298 119 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 HIST1H4AP62805 103 aaKnown RBP4.76□□□□□ -1.65
USP28-202ENST00000535607 DAZ2Q13117 558 aaKnown RBP4.76□□□□□ -1.65
USP28-202ENST00000535607 DAZ4Q86SG3 579 aaKnown RBP4.76□□□□□ -1.65
USP28-202ENST00000535607 C5orf56Q8N8D9 126 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 LINC00308Q8TCZ7 52 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 RHPN1-AS1Q9BWJ2 59 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 SIRPDQ9H106 197 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 DAZ3Q9NR90 486 aaKnown RBP4.76□□□□□ -1.65
USP28-202ENST00000535607 ITPR2Q14571 2701 aa4.76□□□□□ -1.65
USP28-202ENST00000535607 AKAP6Q13023 2319 aa4.75□□□□□ -1.65
USP28-202ENST00000535607 POLQO75417 2590 aa4.75□□□□□ -1.65
USP28-202ENST00000535607 G3V318 75 aa4.75□□□□□ -1.65
USP28-202ENST00000535607 CRPP02741 224 aa4.75□□□□□ -1.65
USP28-202ENST00000535607 IGF1P05019 195 aa4.75□□□□□ -1.65
USP28-202ENST00000535607 SAA4P35542 130 aa4.75□□□□□ -1.65
USP28-202ENST00000535607 ADAMTSL4-AS1Q5T5F5 129 aa4.75□□□□□ -1.65
USP28-202ENST00000535607 PRRC2AP48634 2157 aaKnown RBP4.74□□□□□ -1.65
USP28-202ENST00000535607 RBMY1BA6NDE4 496 aaKnown RBP4.74□□□□□ -1.65
USP28-202ENST00000535607 RBMY1EA6NEQ0 496 aaKnown RBP4.74□□□□□ -1.65
USP28-202ENST00000535607 BCE1O60756 84 aa4.74□□□□□ -1.65
USP28-202ENST00000535607 RBMY1DP0C7P1 496 aaKnown RBP4.74□□□□□ -1.65
USP28-202ENST00000535607 RBMY1A1P0DJD3 496 aaKnown RBP4.74□□□□□ -1.65
USP28-202ENST00000535607 RBMY1CP0DJD4 496 aa4.74□□□□□ -1.65
USP28-202ENST00000535607 OPRPNQ99935 248 aaPredicted RBP4.74□□□□□ -1.65
USP28-202ENST00000535607 CSMD1Q96PZ7 3565 aa4.74□□□□□ -1.65
USP28-202ENST00000535607 OTOGQ6ZRI0 2925 aa4.74□□□□□ -1.65
USP28-202ENST00000535607 TRAV13-1A0A0B4J241 112 aa4.73□□□□□ -1.65
USP28-202ENST00000535607 hADV29S1A0JD25 119 aa4.73□□□□□ -1.65
USP28-202ENST00000535607 RPL28P46779 137 aaKnown RBP4.73□□□□□ -1.65
USP28-202ENST00000535607 SYNJ2BPP57105 145 aa4.73□□□□□ -1.65
USP28-202ENST00000535607 JPT2Q9H910 190 aa4.73□□□□□ -1.65
USP28-202ENST00000535607 UBE2D4Q9Y2X8 147 aa4.73□□□□□ -1.65
USP28-202ENST00000535607 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.73□□□□□ -1.658e-9■■■■□ 25.3
USP28-202ENST00000535607 ABCA2Q9BZC7 2435 aa4.73□□□□□ -1.65
USP28-202ENST00000535607 ITPR3Q14573 2671 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 TMEM89A2RUT3 159 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 F6UB75 175 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 JMJD7-PLA2G4BH0Y9G9 81 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 IGHV4-31P0DP07 118 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 NPC2P61916 151 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 UNQ9165/PRO28630Q6UXU0 137 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 FAM19A3Q7Z5A8 133 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 C3orf56Q8N813 242 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 WFDC11Q8NEX6 87 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 DPH3Q96FX2 82 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 C2orf48Q96LS8 159 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 Q9H8V8 135 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 ZNF580Q9UK33 172 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 ARHGAP32A7KAX9 2087 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 CELSR1Q9NYQ6 3014 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 BAHCC1Q9P281 2608 aa4.72□□□□□ -1.65
USP28-202ENST00000535607 MAP1AP78559 2803 aaPredicted RBP4.71□□□□□ -1.66
USP28-202ENST00000535607 IGKV3-7A0A075B6H7 116 aa4.71□□□□□ -1.66
USP28-202ENST00000535607 LOC107984640A0A0U1RRK4 108 aa4.71□□□□□ -1.66
USP28-202ENST00000535607 A0A1B0GUV1 79 aa4.71□□□□□ -1.66
USP28-202ENST00000535607 IGHG2P01859 326 aa4.71□□□□□ -1.66
USP28-202ENST00000535607 CEMP1Q6PRD7 247 aaPredicted RBP4.71□□□□□ -1.66
USP28-202ENST00000535607 SMCR5Q8TEV8 140 aa4.71□□□□□ -1.66
USP28-202ENST00000535607 CCDC168Q8NDH2 2452 aa4.71□□□□□ -1.66
USP28-202ENST00000535607 FLNAP21333 2647 aaKnown RBP4.71□□□□□ -1.66
USP28-202ENST00000535607 CR1P17927 2039 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 TRBV10-3A0A0K0K1G6 114 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 H3BQ85 93 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 KRTAP10-11P60412 298 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 C18orf65Q6ZTR6 163 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 LINC00467Q9BRT7 94 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 CHCHD7Q9BUK0 85 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 KLK5Q9Y337 293 aaPredicted RBP4.7□□□□□ -1.66
USP28-202ENST00000535607 ZANQ9Y493 2812 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 MUC4Q99102 2169 aa4.7□□□□□ -1.66
USP28-202ENST00000535607 FLNBO75369 2602 aaKnown RBP4.69□□□□□ -1.66
USP28-202ENST00000535607 K7EQG2 157 aa4.69□□□□□ -1.66
USP28-202ENST00000535607 IGHV3-53P01767 116 aa4.69□□□□□ -1.66
USP28-202ENST00000535607 ATP5EP56381 51 aaPredicted RBP4.69□□□□□ -1.66
USP28-202ENST00000535607 RBMY1FQ15415 496 aaKnown RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms