RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TIMM17AQ99595 171 aa14.64□□□□□ -0.07
SFSWAP-204ENST00000535399 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.63□□□□□ -0.07
SFSWAP-204ENST00000535399 MALP21145 153 aa14.63□□□□□ -0.07
SFSWAP-204ENST00000535399 SDIM1Q6ZPB5 146 aa14.63□□□□□ -0.07
SFSWAP-204ENST00000535399 LINC00526Q96FQ7 95 aa14.63□□□□□ -0.07
SFSWAP-204ENST00000535399 URB1-AS1Q96HZ7 61 aa14.63□□□□□ -0.07
SFSWAP-204ENST00000535399 KRTAP4-5Q9BYR2 181 aa14.63□□□□□ -0.07
SFSWAP-204ENST00000535399 VCX2Q9H322 139 aa14.63□□□□□ -0.07
SFSWAP-204ENST00000535399 UBE2D1P51668 147 aa14.62□□□□□ -0.07
SFSWAP-204ENST00000535399 LINC00242Q5T6M2 205 aa14.62□□□□□ -0.07
SFSWAP-204ENST00000535399 ERASQ7Z444 233 aa14.61□□□□□ -0.07
SFSWAP-204ENST00000535399 SCGB3A1Q96QR1 104 aa14.61□□□□□ -0.07
SFSWAP-204ENST00000535399 C2orf88Q9BSF0 95 aa14.61□□□□□ -0.07
SFSWAP-204ENST00000535399 IGHV3-64A0A075B6Q5 118 aa14.6□□□□□ -0.07
SFSWAP-204ENST00000535399 COX6A2Q02221 97 aa14.6□□□□□ -0.07
SFSWAP-204ENST00000535399 CHAC1Q9BUX1 264 aa14.6□□□□□ -0.07
SFSWAP-204ENST00000535399 LINC01549A6NIU2 74 aa14.59□□□□□ -0.07
SFSWAP-204ENST00000535399 LINC00614P0C842 121 aa14.59□□□□□ -0.07
SFSWAP-204ENST00000535399 PAPPA-AS1Q5QFB9 102 aa14.59□□□□□ -0.07
SFSWAP-204ENST00000535399 SCXQ7RTU7 201 aa14.59□□□□□ -0.07
SFSWAP-204ENST00000535399 ZNF561-AS1K7EIQ3 104 aa14.58□□□□□ -0.08
SFSWAP-204ENST00000535399 APOMO95445 188 aa14.58□□□□□ -0.08
SFSWAP-204ENST00000535399 A0A096LNJ9 63 aa14.57□□□□□ -0.08
SFSWAP-204ENST00000535399 SMR3BP02814 79 aaPredicted RBP14.57□□□□□ -0.08
SFSWAP-204ENST00000535399 ABCA13Q86UQ4 5058 aa14.57□□□□□ -0.08
SFSWAP-204ENST00000535399 IGLV4-69A0A075B6H9 119 aa14.56□□□□□ -0.08
SFSWAP-204ENST00000535399 PANO1I0J062 215 aa14.56□□□□□ -0.08
SFSWAP-204ENST00000535399 FAM19A3Q7Z5A8 133 aa14.56□□□□□ -0.08
SFSWAP-204ENST00000535399 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.56□□□□□ -0.08
SFSWAP-204ENST00000535399 A0A087WZ39 114 aa14.55□□□□□ -0.08
SFSWAP-204ENST00000535399 CIRBP-AS1Q8TBR5 109 aa14.55□□□□□ -0.08
SFSWAP-204ENST00000535399 COLCA2A8K830 154 aa14.54□□□□□ -0.08
SFSWAP-204ENST00000535399 RAB5BP61020 215 aa14.54□□□□□ -0.08
SFSWAP-204ENST00000535399 SPAG11BQ08648 103 aa14.54□□□□□ -0.08
SFSWAP-204ENST00000535399 SYCNQ0VAF6 134 aa14.54□□□□□ -0.08
SFSWAP-204ENST00000535399 OR10D4PQ8NGN7 298 aa14.54□□□□□ -0.08
SFSWAP-204ENST00000535399 CARD19Q96LW7 228 aa14.54□□□□□ -0.08
SFSWAP-204ENST00000535399 TRGC2P03986 189 aa14.53□□□□□ -0.08
SFSWAP-204ENST00000535399 CIRBPQ14011 172 aaKnown RBP14.53□□□□□ -0.08
SFSWAP-204ENST00000535399 ORAOV1Q8WV07 137 aa14.53□□□□□ -0.08
SFSWAP-204ENST00000535399 PMCHL1Q16048 86 aa14.52□□□□□ -0.09
SFSWAP-204ENST00000535399 C2orf48Q96LS8 159 aa14.52□□□□□ -0.09
SFSWAP-204ENST00000535399 EPM2AB3EWF7 344 aa14.51□□□□□ -0.09
SFSWAP-204ENST00000535399 HBDP02042 147 aa14.51□□□□□ -0.09
SFSWAP-204ENST00000535399 Q6ZRU5 148 aa14.51□□□□□ -0.09
SFSWAP-204ENST00000535399 LINC01561Q8N1V8 128 aa14.51□□□□□ -0.09
SFSWAP-204ENST00000535399 PCLOQ9Y6V0 5065 aa14.51□□□□□ -0.09
SFSWAP-204ENST00000535399 CHTF8P0CG12 524 aa14.5□□□□□ -0.09
SFSWAP-204ENST00000535399 CAMK2N2Q96S95 79 aa14.5□□□□□ -0.09
SFSWAP-204ENST00000535399 CST9LQ9H4G1 147 aa14.5□□□□□ -0.09
SFSWAP-204ENST00000535399 VPS13BQ7Z7G8 4022 aa14.49□□□□□ -0.09
SFSWAP-204ENST00000535399 A0A0J9YXV3 536 aa14.49□□□□□ -0.09
SFSWAP-204ENST00000535399 SCO1O75880 301 aa14.49□□□□□ -0.09
SFSWAP-204ENST00000535399 SEC11AP67812 179 aa14.49□□□□□ -0.09
SFSWAP-204ENST00000535399 PDZD11Q5EBL8 140 aa14.49□□□□□ -0.09
SFSWAP-204ENST00000535399 Q5VSD8 79 aa14.49□□□□□ -0.09
SFSWAP-204ENST00000535399 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.48□□□□□ -0.09
SFSWAP-204ENST00000535399 HERVK_113P63121 156 aa14.48□□□□□ -0.09
SFSWAP-204ENST00000535399 KIAA0087Q14695 138 aa14.48□□□□□ -0.09
SFSWAP-204ENST00000535399 PMVKQ15126 192 aa14.48□□□□□ -0.09
SFSWAP-204ENST00000535399 SPACA4Q8TDM5 124 aa14.48□□□□□ -0.09
SFSWAP-204ENST00000535399 CHCHD1Q96BP2 118 aaKnown RBP14.48□□□□□ -0.09
SFSWAP-204ENST00000535399 GEMIN7Q9H840 131 aaKnown RBP14.47□□□□□ -0.09
SFSWAP-204ENST00000535399 F8WDY8 70 aa14.46□□□□□ -0.09
SFSWAP-204ENST00000535399 LINC00528Q8N1L1 170 aa14.46□□□□□ -0.09
SFSWAP-204ENST00000535399 CDKN2A-AS1Q9UH64 79 aa14.46□□□□□ -0.09
SFSWAP-204ENST00000535399 TINCRA0A1B0GVN0 87 aa14.45□□□□□ -0.1
SFSWAP-204ENST00000535399 FAM229AH3BQW9 127 aa14.45□□□□□ -0.1
SFSWAP-204ENST00000535399 A0A096LNI7 61 aa14.44□□□□□ -0.1
SFSWAP-204ENST00000535399 IGKV2-24A0A0C4DH68 120 aa14.43□□□□□ -0.1
SFSWAP-204ENST00000535399 ATP5LO75964 103 aa14.43□□□□□ -0.1
SFSWAP-204ENST00000535399 RNF151Q2KHN1 245 aa14.43□□□□□ -0.1
SFSWAP-204ENST00000535399 C10orf25Q5T742 122 aa14.43□□□□□ -0.1
SFSWAP-204ENST00000535399 BAGE3Q86Y29 109 aa14.43□□□□□ -0.1
SFSWAP-204ENST00000535399 MRPL35Q9NZE8 188 aaKnown RBP14.43□□□□□ -0.1
SFSWAP-204ENST00000535399 PKIGQ9Y2B9 76 aa14.43□□□□□ -0.1
SFSWAP-204ENST00000535399 IGLV5-45A0A087WSX0 123 aa14.42□□□□□ -0.1
SFSWAP-204ENST00000535399 A0A087WYN8 130 aa14.42□□□□□ -0.1
SFSWAP-204ENST00000535399 NDUFA1O15239 70 aa14.42□□□□□ -0.1
SFSWAP-204ENST00000535399 UNQ6190/PRO20217Q6UXQ8 127 aa14.42□□□□□ -0.1
SFSWAP-204ENST00000535399 LINC00469Q8N7U9 141 aa14.42□□□□□ -0.1
SFSWAP-204ENST00000535399 LOC107984640A0A0U1RRK4 108 aa14.41□□□□□ -0.1
SFSWAP-204ENST00000535399 MAJINQ3KP22 176 aa14.41□□□□□ -0.1
SFSWAP-204ENST00000535399 DPH3Q96FX2 82 aa14.41□□□□□ -0.1
SFSWAP-204ENST00000535399 LINC00310P59036 64 aa14.4□□□□□ -0.1
SFSWAP-204ENST00000535399 PLAC8Q9NZF1 115 aa14.4□□□□□ -0.1
SFSWAP-204ENST00000535399 NDUFA6P56556 154 aa14.39□□□□□ -0.11
SFSWAP-204ENST00000535399 PACRGQ96M98 296 aaPredicted RBP14.39□□□□□ -0.11
SFSWAP-204ENST00000535399 LINC00474Q9P2X8 69 aa14.39□□□□□ -0.11
SFSWAP-204ENST00000535399 C6orf48Q9UBA6 75 aa14.39□□□□□ -0.11
SFSWAP-204ENST00000535399 HSBP1O75506 76 aa14.38□□□□□ -0.11
SFSWAP-204ENST00000535399 IGLC3P0DOY3 106 aa14.38□□□□□ -0.11
SFSWAP-204ENST00000535399 PTTG1IPP53801 180 aa14.38□□□□□ -0.11
SFSWAP-204ENST00000535399 C2orf82Q6UX34 121 aa14.38□□□□□ -0.11
SFSWAP-204ENST00000535399 SMIM1B2RUZ4 78 aa14.37□□□□□ -0.11
SFSWAP-204ENST00000535399 SERF1AO75920 110 aa14.37□□□□□ -0.11
SFSWAP-204ENST00000535399 Q8IZM0 81 aa14.37□□□□□ -0.11
SFSWAP-204ENST00000535399 FAM19A2Q8N3H0 131 aa14.37□□□□□ -0.11
SFSWAP-204ENST00000535399 TOMM7Q9P0U1 55 aa14.37□□□□□ -0.11
SFSWAP-204ENST00000535399 SRRM2Q9UQ35 2752 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms