RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 IGHV3-30P01768 117 aa5.74□□□□□ -1.49
NEDD8-207ENST00000533242 IGHV3-30-5P0DP03 117 aa5.74□□□□□ -1.49
NEDD8-207ENST00000533242 PAPPA-AS1Q5QFB9 102 aa5.74□□□□□ -1.49
NEDD8-207ENST00000533242 C1orf158Q8N1D5 194 aa5.74□□□□□ -1.49
NEDD8-207ENST00000533242 C1QTNF4Q9BXJ3 329 aa5.74□□□□□ -1.49
NEDD8-207ENST00000533242 PKHD1P08F94 4074 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 TRAV8-3A0A0A6YYJ7 113 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 C16orf90A8MZG2 172 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 K7ERU9 68 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 RHODO00212 210 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 APOMO95445 188 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 HERVK_113P61574 105 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 ZNF415Q09FC8 603 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 SLC25A29Q8N8R3 303 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 A8MWV9 139 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 TSPAN13O95857 204 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 SPART-AS1P0CW21 52 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 SH2D6Q7Z4S9 175 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 C10orf126Q8N4M7 172 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 LINC00467Q9BRT7 94 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 VCX2Q9H322 139 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 PRO0461Q9UI25 63 aa5.73□□□□□ -1.49
NEDD8-207ENST00000533242 INSP01308 110 aa5.72□□□□□ -1.49
NEDD8-207ENST00000533242 CFC1BP0CG36 223 aa5.72□□□□□ -1.49
NEDD8-207ENST00000533242 CFC1P0CG37 223 aa5.72□□□□□ -1.49
NEDD8-207ENST00000533242 Q6ZUT4 128 aa5.72□□□□□ -1.49
NEDD8-207ENST00000533242 Q8N1X5 172 aa5.72□□□□□ -1.49
NEDD8-207ENST00000533242 SPXQ9BT56 116 aa5.72□□□□□ -1.49
NEDD8-207ENST00000533242 TNFRSF18Q9Y5U5 241 aa5.72□□□□□ -1.49
NEDD8-207ENST00000533242 SMIM9A6NGZ8 99 aa5.71□□□□□ -1.49
NEDD8-207ENST00000533242 IGHV3-53P01767 116 aa5.71□□□□□ -1.49
NEDD8-207ENST00000533242 RPL24P83731 157 aaKnown RBP5.71□□□□□ -1.49
NEDD8-207ENST00000533242 UBE2D4Q9Y2X8 147 aa5.71□□□□□ -1.49
NEDD8-207ENST00000533242 LGALS3P17931 250 aaKnown RBP5.71□□□□□ -1.5
NEDD8-207ENST00000533242 ETDBQ3ZM63 59 aa5.71□□□□□ -1.5
NEDD8-207ENST00000533242 SPANXB1Q9NS25 103 aaPredicted RBP5.71□□□□□ -1.5
NEDD8-207ENST00000533242 PYGO1Q9Y3Y4 419 aa5.71□□□□□ -1.5
NEDD8-207ENST00000533242 LEPROTO15243 131 aa5.7□□□□□ -1.5
NEDD8-207ENST00000533242 RS1O15537 224 aa5.7□□□□□ -1.5
NEDD8-207ENST00000533242 IGHV3-30-3P0DP02 117 aa5.7□□□□□ -1.5
NEDD8-207ENST00000533242 SMCPP49901 116 aaPredicted RBP5.7□□□□□ -1.5
NEDD8-207ENST00000533242 MRPS36P82909 103 aaKnown RBP5.7□□□□□ -1.5
NEDD8-207ENST00000533242 TNP2Q05952 138 aa5.7□□□□□ -1.5
NEDD8-207ENST00000533242 Q6ZTI0 123 aa5.7□□□□□ -1.5
NEDD8-207ENST00000533242 TRGV1A0A0A0MS02 117 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 A4D1N5 150 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 LINC00694P0DN24 101 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 UBE2D3P61077 147 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 UBE2D2P62837 147 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 PIK3CD-AS1Q5SR53 167 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 LINC00528Q8N1L1 170 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 PTH2Q96A98 100 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 LITAFQ99732 161 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 LOC107984156A0A0G2JMH3 177 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 A0A0J9YXY3 114 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 SPINK8P0C7L1 97 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 ADAMTSL4-AS1Q5T5F5 129 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 ARL17AQ8IVW1 177 aa5.69□□□□□ -1.5
NEDD8-207ENST00000533242 TMEM238LA0A1B0GVL6 79 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 PLAC8L1A1L4L8 177 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 F8W1H4 67 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 GAGE13Q4V321 117 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 FAM222AQ5U5X8 452 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 NTM-AS1Q6ZSK4 140 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 MUSTN1Q8IVN3 82 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 C6orf223Q8N319 242 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 C15orf53Q8NAA6 179 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 TIMM21Q9BVV7 248 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 HSPG2P98160 4391 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 HTN3P15516 51 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 COX6A2Q02221 97 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 CLUHP3Q96NS8 147 aa5.68□□□□□ -1.5
NEDD8-207ENST00000533242 NBDYA0A0U1RRE5 68 aa5.67□□□□□ -1.5
NEDD8-207ENST00000533242 TCL1BO95988 128 aa5.67□□□□□ -1.5
NEDD8-207ENST00000533242 PSMB2P49721 201 aa5.67□□□□□ -1.5
NEDD8-207ENST00000533242 COTL1Q14019 142 aa5.67□□□□□ -1.5
NEDD8-207ENST00000533242 NOP10Q9NPE3 64 aaKnown RBP5.67□□□□□ -1.5
NEDD8-207ENST00000533242 CDKN2A-AS1Q9UH64 79 aa5.67□□□□□ -1.5
NEDD8-207ENST00000533242 IGHV1-58A0A0C4DH39 117 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 TMEM263Q8WUH6 116 aaKnown RBP5.66□□□□□ -1.5
NEDD8-207ENST00000533242 VSIG2Q96IQ7 327 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 SPANXA1Q9NS26 97 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 LOC100131303A0A0U1RQF7 123 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 TINCRA0A1B0GVN0 87 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 H7C2G1 150 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 NPC2P61916 151 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 PRO1854Q9UHT4 67 aa5.66□□□□□ -1.5
NEDD8-207ENST00000533242 IGHV3-33P01772 117 aa5.65□□□□□ -1.5
NEDD8-207ENST00000533242 CRYBA4P53673 196 aa5.65□□□□□ -1.5
NEDD8-207ENST00000533242 DAD1P61803 113 aa5.65□□□□□ -1.5
NEDD8-207ENST00000533242 DAND5Q8N907 189 aa5.65□□□□□ -1.5
NEDD8-207ENST00000533242 DNAJC30Q96LL9 226 aa5.65□□□□□ -1.5
NEDD8-207ENST00000533242 NDUFA12Q9UI09 145 aa5.65□□□□□ -1.5
NEDD8-207ENST00000533242 GAGE12JA6NER3 117 aa5.65□□□□□ -1.51
NEDD8-207ENST00000533242 GAGE4Q13068 117 aa5.65□□□□□ -1.51
NEDD8-207ENST00000533242 GAGE5Q13069 117 aa5.65□□□□□ -1.51
NEDD8-207ENST00000533242 K7EQD1 137 aa5.64□□□□□ -1.51
NEDD8-207ENST00000533242 LINC00242Q5T6M2 205 aa5.64□□□□□ -1.51
NEDD8-207ENST00000533242 GAGE7O76087 117 aa5.64□□□□□ -1.51
NEDD8-207ENST00000533242 GAGE12FP0CL80 117 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms