RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TNXBP22105 4242 aa9.12□□□□□ -0.95
VPS28-215ENST00000531924 IFITM10A6NMD0 228 aa9.12□□□□□ -0.95
VPS28-215ENST00000531924 C9JQL5 133 aa9.12□□□□□ -0.95
VPS28-215ENST00000531924 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.12□□□□□ -0.95
VPS28-215ENST00000531924 RAB5AP20339 215 aa9.12□□□□□ -0.95
VPS28-215ENST00000531924 SRSF9Q13242 221 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS28-215ENST00000531924 RNF151Q2KHN1 245 aa9.12□□□□□ -0.95
VPS28-215ENST00000531924 IMMP2LQ96T52 175 aa9.12□□□□□ -0.95
VPS28-215ENST00000531924 SMDT1Q9H4I9 107 aa9.12□□□□□ -0.95
VPS28-215ENST00000531924 F8WDY8 70 aa9.11□□□□□ -0.95
VPS28-215ENST00000531924 NDUFA1O15239 70 aa9.11□□□□□ -0.95
VPS28-215ENST00000531924 PPBPP02775 128 aa9.11□□□□□ -0.95
VPS28-215ENST00000531924 TGIF2-C20orf24A0A0A6YYL0 155 aa9.1□□□□□ -0.95
VPS28-215ENST00000531924 NPYP01303 97 aa9.1□□□□□ -0.95
VPS28-215ENST00000531924 MRPS36P82909 103 aaKnown RBP9.1□□□□□ -0.95
VPS28-215ENST00000531924 SRSF3P84103 164 aaKnown RBP9.1□□□□□ -0.95
VPS28-215ENST00000531924 C1orf137Q5JT78 98 aa9.1□□□□□ -0.95
VPS28-215ENST00000531924 PSORS1C2Q9UIG4 136 aa9.1□□□□□ -0.95
VPS28-215ENST00000531924 IFI27P40305 119 aaPredicted RBP9.09□□□□□ -0.95
VPS28-215ENST00000531924 KRTAP10-8P60410 259 aa9.09□□□□□ -0.95
VPS28-215ENST00000531924 ORMDL3Q8N138 153 aa9.09□□□□□ -0.95
VPS28-215ENST00000531924 MRPL35Q9NZE8 188 aaKnown RBP9.09□□□□□ -0.95
VPS28-215ENST00000531924 IGHV3OR16-9A0A0B4J2B5 98 aa9.08□□□□□ -0.96
VPS28-215ENST00000531924 ODF1Q14990 250 aa9.08□□□□□ -0.96
VPS28-215ENST00000531924 TMEM136Q6ZRR5 245 aa9.08□□□□□ -0.96
VPS28-215ENST00000531924 PHF5AQ7RTV0 110 aaKnown RBP9.08□□□□□ -0.96
VPS28-215ENST00000531924 A0A1B0GXF2 115 aa9.07□□□□□ -0.96
VPS28-215ENST00000531924 PRELID3AQ96N28 172 aa9.07□□□□□ -0.96
VPS28-215ENST00000531924 A0A087WZ39 114 aa9.06□□□□□ -0.96
VPS28-215ENST00000531924 ATP5L2Q7Z4Y8 100 aa9.06□□□□□ -0.96
VPS28-215ENST00000531924 A0A1B0GVG6 124 aa9.05□□□□□ -0.96
VPS28-215ENST00000531924 GAGE2EQ4V326 116 aa9.05□□□□□ -0.96
VPS28-215ENST00000531924 UNQ6190/PRO20217Q6UXQ8 127 aa9.05□□□□□ -0.96
VPS28-215ENST00000531924 GAGE2DQ9UEU5 116 aa9.05□□□□□ -0.96
VPS28-215ENST00000531924 LOC389332A0A1B0GUA5 103 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 C10orf25Q5T742 122 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 FAM19A5Q7Z5A7 132 aaPredicted RBP9.04□□□□□ -0.96
VPS28-215ENST00000531924 DIRC1Q969H9 104 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 FAM104AQ969W3 186 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 TMEM141Q96I45 108 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 C2orf88Q9BSF0 95 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 MAP1LC3AQ9H492 121 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 LRP2P98164 4655 aa9.04□□□□□ -0.96
VPS28-215ENST00000531924 TLX1NBP0CAT3 122 aa9.03□□□□□ -0.96
VPS28-215ENST00000531924 Q6ZN92 141 aa9.03□□□□□ -0.96
VPS28-215ENST00000531924 TEX43Q6ZNM6 134 aa9.03□□□□□ -0.96
VPS28-215ENST00000531924 PACRGQ96M98 296 aaPredicted RBP9.03□□□□□ -0.96
VPS28-215ENST00000531924 C6orf48Q9UBA6 75 aa9.03□□□□□ -0.96
VPS28-215ENST00000531924 PYGO1Q9Y3Y4 419 aa9.03□□□□□ -0.96
VPS28-215ENST00000531924 IGLV4-3A0A075B6K6 122 aa9.02□□□□□ -0.97
VPS28-215ENST00000531924 FAM168BA1KXE4 195 aa9.02□□□□□ -0.97
VPS28-215ENST00000531924 IGLV7-43P04211 117 aa9.02□□□□□ -0.97
VPS28-215ENST00000531924 UBE2BP63146 152 aa9.02□□□□□ -0.97
VPS28-215ENST00000531924 LAMTOR2Q9Y2Q5 125 aa9.02□□□□□ -0.97
VPS28-215ENST00000531924 RNF213Q63HN8 5207 aa9.02□□□□□ -0.97
VPS28-215ENST00000531924 PRSS2P07478 247 aa9.01□□□□□ -0.97
VPS28-215ENST00000531924 LINC00242Q5T6M2 205 aa9.01□□□□□ -0.97
VPS28-215ENST00000531924 CYSLTR1Q9Y271 337 aa9.01□□□□□ -0.97
VPS28-215ENST00000531924 TRBV30A0A0K0K1B3 111 aa9□□□□□ -0.97
VPS28-215ENST00000531924 MT-ND4LP03901 98 aa9□□□□□ -0.97
VPS28-215ENST00000531924 VCX2Q9H322 139 aa9□□□□□ -0.97
VPS28-215ENST00000531924 M0QXV9 152 aa8.99□□□□□ -0.97
VPS28-215ENST00000531924 PNRC1Q12796 327 aaPredicted RBP8.99□□□□□ -0.97
VPS28-215ENST00000531924 Q8N8P6 123 aa8.99□□□□□ -0.97
VPS28-215ENST00000531924 NDUFC2-KCTD14E9PQ53 114 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 CKS1BP61024 79 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 RAB14P61106 215 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 KIAA0087Q14695 138 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 ORMDL2Q53FV1 153 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 C2orf82Q6UX34 121 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 ANAPC16Q96DE5 110 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 TOMM7Q9P0U1 55 aa8.98□□□□□ -0.97
VPS28-215ENST00000531924 PRSS47A8MTI9 375 aa8.97□□□□□ -0.97
VPS28-215ENST00000531924 H0Y9J4 135 aa8.97□□□□□ -0.97
VPS28-215ENST00000531924 UBE2D1P51668 147 aa8.97□□□□□ -0.97
VPS28-215ENST00000531924 C2orf66Q6UXQ4 117 aa8.97□□□□□ -0.97
VPS28-215ENST00000531924 LINC01561Q8N1V8 128 aa8.97□□□□□ -0.97
VPS28-215ENST00000531924 PRR26Q8N8Z3 221 aa8.97□□□□□ -0.97
VPS28-215ENST00000531924 C6orf226Q5I0X4 101 aa8.96□□□□□ -0.98
VPS28-215ENST00000531924 PAPPA-AS1Q5QFB9 102 aa8.96□□□□□ -0.98
VPS28-215ENST00000531924 CTDSP1Q9GZU7 261 aa8.96□□□□□ -0.98
VPS28-215ENST00000531924 K7EMI3 77 aa8.95□□□□□ -0.98
VPS28-215ENST00000531924 G0S2P27469 103 aa8.95□□□□□ -0.98
VPS28-215ENST00000531924 ZC2HC1BQ5TFG8 222 aa8.95□□□□□ -0.98
VPS28-215ENST00000531924 NPSP0C0P6 89 aa8.94□□□□□ -0.98
VPS28-215ENST00000531924 SEC11AP67812 179 aa8.94□□□□□ -0.98
VPS28-215ENST00000531924 KRTAP11-1Q8IUC1 163 aa8.94□□□□□ -0.98
VPS28-215ENST00000531924 ALKBH7Q9BT30 221 aaPredicted RBP8.94□□□□□ -0.98
VPS28-215ENST00000531924 GEMIN7Q9H840 131 aaKnown RBP8.94□□□□□ -0.98
VPS28-215ENST00000531924 NXT2Q9NPJ8 142 aaKnown RBP8.94□□□□□ -0.98
VPS28-215ENST00000531924 AMELXQ99217 191 aa8.93□□□□□ -0.98
VPS28-215ENST00000531924 IGLV1-50A0A075B6I6 118 aa8.92□□□□□ -0.98
VPS28-215ENST00000531924 HERVK_113P63121 156 aa8.92□□□□□ -0.98
VPS28-215ENST00000531924 C9orf129Q5T035 196 aaKnown RBP8.92□□□□□ -0.98
VPS28-215ENST00000531924 IGIPA6NJ69 53 aa8.91□□□□□ -0.98
VPS28-215ENST00000531924 LBHQ53QV2 105 aaPredicted RBP8.91□□□□□ -0.98
VPS28-215ENST00000531924 LINC00173Q6ZV60 143 aa8.91□□□□□ -0.98
VPS28-215ENST00000531924 KRTAP7-1Q8IUC3 87 aa8.91□□□□□ -0.98
VPS28-215ENST00000531924 Q8IZM0 81 aa8.91□□□□□ -0.98
VPS28-215ENST00000531924 LINC00469Q8N7U9 141 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms