RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 METTL1Q9UBP6 276 aaKnown RBP0.74□□□□□ -2.29
CD44-234ENST00000531873 PLXNA2O75051 1894 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 DYNC2H1Q8NCM8 4307 aaKnown RBP0.73□□□□□ -2.29
CD44-234ENST00000531873 TRRAPQ9Y4A5 3859 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 SACSQ9NZJ4 4579 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 CCDC171Q6TFL3 1326 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.73□□□□□ -2.29
CD44-234ENST00000531873 BBIP1A8MTZ0 92 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 K7EIL1 84 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 KRTAP2-3P0C7H8 128 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 HLA-DRB4P13762 266 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 HIST1H1BP16401 226 aaKnown RBP0.73□□□□□ -2.29
CD44-234ENST00000531873 HIST1H1AQ02539 215 aaPredicted RBP0.73□□□□□ -2.29
CD44-234ENST00000531873 DEFB133Q30KQ1 61 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 MAFIPQ8WZ33 124 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 AP1S3Q96PC3 154 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 SMIM7Q9BQ49 75 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 KRTAP2-4Q9BYR9 128 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 BANF2Q9H503 90 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 LINC00846Q9NV44 126 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 HLA-DRB4X5D2U9 266 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 KMT2DO14686 5537 aa0.73□□□□□ -2.29
CD44-234ENST00000531873 SULT1C4O75897 302 aa0.72□□□□□ -2.29
CD44-234ENST00000531873 RHOHQ15669 191 aa0.72□□□□□ -2.29
CD44-234ENST00000531873 Q5VSD8 79 aa0.72□□□□□ -2.29
CD44-234ENST00000531873 LINC00575Q6W349 94 aa0.72□□□□□ -2.29
CD44-234ENST00000531873 C3orf62Q6ZUJ4 267 aa0.72□□□□□ -2.29
CD44-234ENST00000531873 BOKQ9UMX3 212 aaPredicted RBP0.72□□□□□ -2.29
CD44-234ENST00000531873 ZNF469Q96JG9 3925 aaPredicted RBP0.72□□□□□ -2.29
CD44-234ENST00000531873 AHNAK2Q8IVF2 5795 aa0.72□□□□□ -2.29
CD44-234ENST00000531873 TRAV17A0A0B4J275 112 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 NUPR2A6NF83 97 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 SMIM24O75264 130 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 IGKCP01834 107 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 GYPBP06028 91 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 RPL37AP61513 92 aaKnown RBP0.71□□□□□ -2.3
CD44-234ENST00000531873 UBA52P62987 128 aaKnown RBP0.71□□□□□ -2.3
CD44-234ENST00000531873 PRB3Q04118 309 aaPredicted RBP0.71□□□□□ -2.3
CD44-234ENST00000531873 TFF3Q07654 80 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 LYPD5Q6UWN5 251 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 IDO2Q6ZQW0 420 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 MRPL36Q9P0J6 103 aaKnown RBP0.71□□□□□ -2.3
CD44-234ENST00000531873 ZNF236Q9UL36 1845 aa0.71□□□□□ -2.3
CD44-234ENST00000531873 ROCK2O75116 1388 aaKnown RBP0.7□□□□□ -2.3
CD44-234ENST00000531873 RGPD2P0DJD1 1756 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 PNMA8CA0A1B0GUJ8 204 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 TMEM30CPA0ZSE6 113 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 CLPSL1A2RUU4 121 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 IGF2P01344 180 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 IGLC6P0CF74 106 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 MPC1LP0DKB6 136 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 ADCYAP1P18509 176 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 KDELR1P24390 212 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 GLYATL3Q5SZD4 288 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 OR8J3Q8NGG0 315 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 LZICQ8WZA0 190 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 SLC35B3Q9H1N7 401 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 U3KQA8 63 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 USF3Q68DE3 2245 aa0.7□□□□□ -2.3
CD44-234ENST00000531873 CMYA5Q8N3K9 4069 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 PARP14Q460N5 1801 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 FAT3Q8TDW7 4589 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 NBDYA0A0U1RRE5 68 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 LINC00694P0DN24 101 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 IL7P13232 177 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 PLGLB1Q02325 96 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 SMIM21Q3B7S5 101 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 SLC25A26Q70HW3 274 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 DEFB104AQ8WTQ1 72 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 MAGOHBQ96A72 148 aaKnown RBP0.69□□□□□ -2.3
CD44-234ENST00000531873 KRTAP2-1Q9BYU5 128 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 SMIM3Q9BZL3 60 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 LSM2Q9Y333 95 aaKnown RBP0.69□□□□□ -2.3
CD44-234ENST00000531873 SIPA1L3O60292 1781 aaPredicted RBP0.69□□□□□ -2.3
CD44-234ENST00000531873 HSPG2P98160 4391 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 TANC1Q9C0D5 1861 aa0.69□□□□□ -2.3
CD44-234ENST00000531873 PKHD1P08F94 4074 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 A0A0G2JMM0 328 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 TRBV30A0A0K0K1B3 111 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 LOC101927531A0A1B0GV80 90 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 A0A1W2PPM0 123 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 LYNX1G3V0Z9 82 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 TSPAN19P0C672 248 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 EVI2AP22794 236 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 SMCO1Q147U7 214 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 CLLU1Q5K131 121 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 Q6ZQY7 126 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 Q86TA4 180 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 LINC00208Q96KT6 92 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 FAIMQ9NVQ4 179 aa0.68□□□□□ -2.3
CD44-234ENST00000531873 MRPL35Q9NZE8 188 aaKnown RBP0.68□□□□□ -2.3
CD44-234ENST00000531873 USH2AO75445 5202 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 LRP2P98164 4655 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 CXorf51AA0A1B0GTR3 108 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 FAM236AA0A1B0GUQ0 79 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 FAM236BA0A1B0GV22 79 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 TPST1O60507 370 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 SMR3BP02814 79 aaPredicted RBP0.67□□□□□ -2.3
CD44-234ENST00000531873 IQCJQ1A5X6 159 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 XAF1Q6GPH4 301 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms