RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 IGHV3-64A0A075B6Q5 118 aa14.26□□□□□ -0.13
VPS28-208ENST00000527797 SPINK8P0C7L1 97 aa14.26□□□□□ -0.13
VPS28-208ENST00000527797 DLEU1O43261 78 aa14.26□□□□□ -0.13
VPS28-208ENST00000527797 CRPP02741 224 aa14.26□□□□□ -0.13
VPS28-208ENST00000527797 DNAH10OSP0CZ25 163 aa14.26□□□□□ -0.13
VPS28-208ENST00000527797 PLEKHB2Q96CS7 222 aa14.26□□□□□ -0.13
VPS28-208ENST00000527797 UPK3BQ9BT76 320 aa14.26□□□□□ -0.13
VPS28-208ENST00000527797 IGHV1-58A0A0C4DH39 117 aa14.25□□□□□ -0.13
VPS28-208ENST00000527797 SIVA1O15304 175 aa14.25□□□□□ -0.13
VPS28-208ENST00000527797 XCL1P47992 114 aa14.25□□□□□ -0.13
VPS28-208ENST00000527797 ENHOQ6UWT2 76 aa14.25□□□□□ -0.13
VPS28-208ENST00000527797 TTTY13Q9BZ97 58 aa14.25□□□□□ -0.13
VPS28-208ENST00000527797 TP73-AS1Q9UF72 201 aa14.25□□□□□ -0.13
VPS28-208ENST00000527797 TRAV8-3A0A0A6YYJ7 113 aa14.24□□□□□ -0.13
VPS28-208ENST00000527797 IGHV3OR16-9A0A0B4J2B5 98 aa14.24□□□□□ -0.13
VPS28-208ENST00000527797 J3QQQ9 107 aa14.24□□□□□ -0.13
VPS28-208ENST00000527797 CHCHD10Q8WYQ3 142 aaPredicted RBP14.24□□□□□ -0.13
VPS28-208ENST00000527797 LGALS3P17931 250 aaKnown RBP14.23□□□□□ -0.13
VPS28-208ENST00000527797 HNRNPA3P51991 378 aaKnown RBP14.23□□□□□ -0.13
VPS28-208ENST00000527797 MAPKAPK5-AS1Q8N8E1 139 aa14.23□□□□□ -0.13
VPS28-208ENST00000527797 UBE2WQ96B02 151 aa14.23□□□□□ -0.13
VPS28-208ENST00000527797 CD164L2Q6UWJ8 174 aa14.23□□□□□ -0.13
VPS28-208ENST00000527797 IGLV10-54A0A075B6I4 117 aa14.22□□□□□ -0.13
VPS28-208ENST00000527797 A0A087WZ39 114 aa14.21□□□□□ -0.13
VPS28-208ENST00000527797 TRAV8-4A0A0B4J246 113 aa14.21□□□□□ -0.13
VPS28-208ENST00000527797 MYMXA0A1B0GTQ4 84 aa14.21□□□□□ -0.13
VPS28-208ENST00000527797 SMIM1B2RUZ4 78 aa14.21□□□□□ -0.13
VPS28-208ENST00000527797 TSPEAR-AS2P59090 65 aa14.21□□□□□ -0.13
VPS28-208ENST00000527797 UBE2DNLQ8IWF7 75 aa14.21□□□□□ -0.13
VPS28-208ENST00000527797 PRKDCP78527 4128 aaKnown RBP14.2□□□□□ -0.14
VPS28-208ENST00000527797 MIAQ16674 131 aa14.2□□□□□ -0.14
VPS28-208ENST00000527797 C5orf38Q86SI9 138 aa14.2□□□□□ -0.14
VPS28-208ENST00000527797 IGLV5-39A0A0G2JS06 123 aa14.19□□□□□ -0.14
VPS28-208ENST00000527797 ZNF815PA8K554 130 aa14.19□□□□□ -0.14
VPS28-208ENST00000527797 ZFAND6Q6FIF0 208 aa14.19□□□□□ -0.14
VPS28-208ENST00000527797 Q9H8V8 135 aa14.19□□□□□ -0.14
VPS28-208ENST00000527797 LINC00587B1AMM8 73 aa14.18□□□□□ -0.14
VPS28-208ENST00000527797 FBN3Q75N90 2809 aa14.18□□□□□ -0.14
VPS28-208ENST00000527797 LINC01561Q8N1V8 128 aa14.17□□□□□ -0.14
VPS28-208ENST00000527797 GAGE12HA6NDE8 117 aa14.16□□□□□ -0.14
VPS28-208ENST00000527797 COX7A2LO14548 114 aa14.16□□□□□ -0.14
VPS28-208ENST00000527797 FOXI1Q12951 378 aa14.16□□□□□ -0.14
VPS28-208ENST00000527797 C2orf91Q6ZV80 131 aa14.16□□□□□ -0.14
VPS28-208ENST00000527797 MUC7Q8TAX7 377 aa14.16□□□□□ -0.14
VPS28-208ENST00000527797 CTAG1AP78358 180 aa14.15□□□□□ -0.14
VPS28-208ENST00000527797 C10orf126Q8N4M7 172 aa14.15□□□□□ -0.14
VPS28-208ENST00000527797 IBA57-AS1B1ANH7 110 aa14.14□□□□□ -0.15
VPS28-208ENST00000527797 WWC2-AS2Q96NR7 200 aa14.14□□□□□ -0.15
VPS28-208ENST00000527797 NDUFA12Q9UI09 145 aa14.14□□□□□ -0.15
VPS28-208ENST00000527797 MALP21145 153 aa14.13□□□□□ -0.15
VPS28-208ENST00000527797 SCGB1D4Q6XE38 83 aa14.13□□□□□ -0.15
VPS28-208ENST00000527797 HIGD1BQ9P298 99 aa14.13□□□□□ -0.15
VPS28-208ENST00000527797 K7EP13 123 aa14.12□□□□□ -0.15
VPS28-208ENST00000527797 COX7B2Q8TF08 81 aa14.12□□□□□ -0.15
VPS28-208ENST00000527797 C1orf43Q9BWL3 253 aa14.12□□□□□ -0.15
VPS28-208ENST00000527797 TOMM7Q9P0U1 55 aa14.12□□□□□ -0.15
VPS28-208ENST00000527797 NDUFA1O15239 70 aa14.09□□□□□ -0.15
VPS28-208ENST00000527797 Q9HAA7 133 aa14.09□□□□□ -0.15
VPS28-208ENST00000527797 IGKV2D-24A0A075B6R9 120 aa14.08□□□□□ -0.15
VPS28-208ENST00000527797 APOMO95445 188 aa14.08□□□□□ -0.15
VPS28-208ENST00000527797 KRTAP26-1Q6PEX3 210 aa14.08□□□□□ -0.15
VPS28-208ENST00000527797 PRSS2P07478 247 aa14.08□□□□□ -0.16
VPS28-208ENST00000527797 ORAOV1Q8WV07 137 aa14.07□□□□□ -0.16
VPS28-208ENST00000527797 RMI2Q96E14 147 aa14.07□□□□□ -0.16
VPS28-208ENST00000527797 A0A0J9YXY3 114 aa14.06□□□□□ -0.16
VPS28-208ENST00000527797 C6orf226Q5I0X4 101 aa14.06□□□□□ -0.16
VPS28-208ENST00000527797 Q8IZM0 81 aa14.06□□□□□ -0.16
VPS28-208ENST00000527797 ZNF625Q96I27 306 aaPredicted RBP14.05□□□□□ -0.16
VPS28-208ENST00000527797 HSD52Q0P140 79 aa14.04□□□□□ -0.16
VPS28-208ENST00000527797 HERV-K104P63124 156 aa14.04□□□□□ -0.16
VPS28-208ENST00000527797 M0R143 59 aa14.03□□□□□ -0.16
VPS28-208ENST00000527797 HINT1P49773 126 aaPredicted RBP14.03□□□□□ -0.16
VPS28-208ENST00000527797 CFAP161Q6P656 301 aa14.03□□□□□ -0.16
VPS28-208ENST00000527797 SFTA2Q6UW10 78 aa14.03□□□□□ -0.16
VPS28-208ENST00000527797 TAL2Q16559 108 aa14.02□□□□□ -0.16
VPS28-208ENST00000527797 HIST1H4GQ99525 98 aa14.02□□□□□ -0.16
VPS28-208ENST00000527797 SRSF9Q13242 221 aaKnown RBP eCLIP14.01□□□□□ -0.17
VPS28-208ENST00000527797 KIAA0087Q14695 138 aa14.01□□□□□ -0.17
VPS28-208ENST00000527797 TMEM238C9JI98 176 aa14.01□□□□□ -0.17
VPS28-208ENST00000527797 TTC32Q5I0X7 151 aa14.01□□□□□ -0.17
VPS28-208ENST00000527797 SNHG12Q9BXW3 62 aa14.01□□□□□ -0.17
VPS28-208ENST00000527797 KRTAP1-5Q9BYS1 174 aa14.01□□□□□ -0.17
VPS28-208ENST00000527797 SPANXB1Q9NS25 103 aaPredicted RBP14.01□□□□□ -0.17
VPS28-208ENST00000527797 CXCL5P42830 114 aa14□□□□□ -0.17
VPS28-208ENST00000527797 CKS1BP61024 79 aa14□□□□□ -0.17
VPS28-208ENST00000527797 SPAG11BQ08648 103 aa14□□□□□ -0.17
VPS28-208ENST00000527797 BATFQ16520 125 aa14□□□□□ -0.17
VPS28-208ENST00000527797 COX11Q9Y6N1 276 aa14□□□□□ -0.17
VPS28-208ENST00000527797 DYNC2H1Q8NCM8 4307 aaKnown RBP13.99□□□□□ -0.17
VPS28-208ENST00000527797 CIRBPQ14011 172 aaKnown RBP13.99□□□□□ -0.17
VPS28-208ENST00000527797 BVES-AS1Q5T3Y7 98 aa13.99□□□□□ -0.17
VPS28-208ENST00000527797 NBDYA0A0U1RRE5 68 aa13.98□□□□□ -0.17
VPS28-208ENST00000527797 C3orf84H3BNL1 204 aa13.98□□□□□ -0.17
VPS28-208ENST00000527797 TIMM17BO60830 172 aa13.98□□□□□ -0.17
VPS28-208ENST00000527797 CASC10Q5T4H9 136 aa13.98□□□□□ -0.17
VPS28-208ENST00000527797 MEIG1Q5JSS6 88 aa13.97□□□□□ -0.17
VPS28-208ENST00000527797 TM2D2Q9BX73 214 aa13.97□□□□□ -0.17
VPS28-208ENST00000527797 EREGO14944 169 aa13.97□□□□□ -0.17
VPS28-208ENST00000527797 GCSHP23434 173 aa13.97□□□□□ -0.17
VPS28-208ENST00000527797 C2orf82Q6UX34 121 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms