RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ASH1LQ9NR48 2969 aaKnown RBP2.09□□□□□ -2.07
CD44-217ENST00000525348 IGKV3D-7A0A0C4DH55 119 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 TRBV10-3A0A0K0K1G6 114 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 SDHAF1A6NFY7 115 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 ERC2-IT1O76042 136 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 BAALC-AS2P0C853 105 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 CGB3P0DN86 165 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 CGB7P0DN87 165 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 COX6B1P14854 86 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 SPANXN1Q5VSR9 72 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 ADM2Q7Z4H4 148 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 LYPD1Q8N2G4 141 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 DYNLRB2Q8TF09 96 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 CDC42SE1Q9NRR8 79 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 TAC3Q9UHF0 121 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 U3KQK5 164 aa2.09□□□□□ -2.07
CD44-217ENST00000525348 MYO7BQ6PIF6 2116 aa2.09□□□□□ -2.08
CD44-217ENST00000525348 ACACBO00763 2458 aa2.09□□□□□ -2.08
CD44-217ENST00000525348 AKAP13Q12802 2813 aa2.09□□□□□ -2.08
CD44-217ENST00000525348 WDR87Q6ZQQ6 2873 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 GPR179Q6PRD1 2367 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 BPTFQ12830 3046 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 FAM208BQ5VWN6 2430 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 TRBV7-4A0A0J9YYF1 115 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 TMEM14DPA8MWL7 114 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 SH2D1AO60880 128 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 CCL3P10147 92 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 CD24P25063 80 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 ATP5EP2Q5VTU8 51 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 Q6ZS52 159 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 ZNF826PQ6ZT77 177 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 MIR17HGQ75NE6 70 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 Q8IYB0 196 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 Q8N814 137 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 CYP4F30PQ9H0H9 118 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 TMEM14BQ9NUH8 114 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 DEC1Q9P2X7 70 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 SNURFQ9Y675 71 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 CHD8Q9HCK8 2581 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 WDFY3Q8IZQ1 3526 aa2.08□□□□□ -2.08
CD44-217ENST00000525348 ZZEF1O43149 2961 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 ITPR1Q14643 2758 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 GVINP1Q7Z2Y8 2422 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 A0A0J9YY99 117 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 PSCAO43653 123 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 KRTAP5-8O75690 187 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 LY6HO94772 140 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 PRB4P10163 310 aaPredicted RBP2.07□□□□□ -2.08
CD44-217ENST00000525348 CD52P31358 61 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 C9orf116Q5BN46 136 aaPredicted RBP2.07□□□□□ -2.08
CD44-217ENST00000525348 SPTSSBQ8NFR3 76 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 LINC01560Q8TB33 94 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 RETNLBQ9BQ08 111 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 TTTY10Q9BZA0 68 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 Q9Y3F1 56 aa2.07□□□□□ -2.08
CD44-217ENST00000525348 ANKRD11Q6UB99 2663 aaPredicted RBP2.07□□□□□ -2.08
CD44-217ENST00000525348 INTS1Q8N201 2190 aaKnown RBP2.06□□□□□ -2.08
CD44-217ENST00000525348 SPTBN2O15020 2390 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 RIF1Q5UIP0 2472 aaKnown RBP2.06□□□□□ -2.08
CD44-217ENST00000525348 FASNP49327 2511 aaKnown RBP2.06□□□□□ -2.08
CD44-217ENST00000525348 TRAV23DV6A0A075B6W5 121 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 IGHV5-10-1A0A0J9YXX1 117 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 A0A1B0GW54 56 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 HIGD1CA8MV81 97 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 LHBP01229 141 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 TFF1P04155 84 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 TSPEAR-AS2P59090 65 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 ZFAND2AQ8N6M9 145 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 OBSCN-AS1Q96MR7 158 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 CDC42SE2Q9NRR3 84 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 LINC00846Q9NV44 126 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 ICOSQ9Y6W8 199 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 S4R3C0 116 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 TPRP12270 2363 aaKnown RBP2.06□□□□□ -2.08
CD44-217ENST00000525348 CEP250Q9BV73 2442 aa2.06□□□□□ -2.08
CD44-217ENST00000525348 UNC79Q9P2D8 2635 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 TNRC6BQ9UPQ9 1833 aaKnown RBP2.05□□□□□ -2.08
CD44-217ENST00000525348 LOC400499M0QZD8 3231 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 TRBV6-8A0A0A6YYG3 113 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 TRAV40A0A0B4J280 105 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 LOC101927531A0A1B0GV80 90 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 IGIPA6NJ69 53 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 C11orf86A6NJI1 115 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 CPSF4LA6NMK7 179 aaKnown RBP2.05□□□□□ -2.08
CD44-217ENST00000525348 ZNF815PA8K554 130 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 IGLV2-23P01705 113 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 BGLAPP02818 100 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 ARL14EPLP0DKL9 152 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 RPL27AP46776 148 aaKnown RBP2.05□□□□□ -2.08
CD44-217ENST00000525348 CMC4P56277 68 aaPredicted RBP2.05□□□□□ -2.08
CD44-217ENST00000525348 TFF3Q07654 80 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 C1orf134Q5TEV5 83 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 LINC01590Q5TEZ4 76 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 CAMK2N1Q7Z7J9 78 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 Q8NDZ9 215 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 C1orf64Q8NEQ6 169 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 ZNF355PQ9NSJ1 428 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 TIMM8BQ9Y5J9 83 aaPredicted RBP2.05□□□□□ -2.08
CD44-217ENST00000525348 COL4A2P08572 1712 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 CEP192Q8TEP8 1941 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms