RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 MAPKAPK5-AS1Q8N8E1 139 aa10.16□□□□□ -0.78
LSM1-203ENST00000520755 COX11Q9Y6N1 276 aa10.16□□□□□ -0.78
LSM1-203ENST00000520755 H0Y8G0 127 aa10.15□□□□□ -0.78
LSM1-203ENST00000520755 PRSS1P07477 247 aa10.15□□□□□ -0.78
LSM1-203ENST00000520755 XCL1P47992 114 aa10.15□□□□□ -0.78
LSM1-203ENST00000520755 COX6A2Q02221 97 aa10.15□□□□□ -0.78
LSM1-203ENST00000520755 FOXI1Q12951 378 aa10.15□□□□□ -0.78
LSM1-203ENST00000520755 SS18Q15532 418 aa10.15□□□□□ -0.78
LSM1-203ENST00000520755 PKD1P98161 4303 aa10.14□□□□□ -0.79
LSM1-203ENST00000520755 GAGE12HA6NDE8 117 aa10.14□□□□□ -0.79
LSM1-203ENST00000520755 SYS1-DBNDD2H3BUS1 97 aa10.14□□□□□ -0.79
LSM1-203ENST00000520755 IGLC3P0DOY3 106 aa10.14□□□□□ -0.79
LSM1-203ENST00000520755 MAP1LC3CQ9BXW4 147 aa10.14□□□□□ -0.79
LSM1-203ENST00000520755 DNAH11Q96DT5 4516 aa10.14□□□□□ -0.79
LSM1-203ENST00000520755 A0A087WTM6 91 aa10.13□□□□□ -0.79
LSM1-203ENST00000520755 A0A1B0GVY2 172 aa10.13□□□□□ -0.79
LSM1-203ENST00000520755 EREGO14944 169 aa10.13□□□□□ -0.79
LSM1-203ENST00000520755 LECT2O14960 151 aa10.13□□□□□ -0.79
LSM1-203ENST00000520755 MRPL35Q9NZE8 188 aaKnown RBP10.13□□□□□ -0.79
LSM1-203ENST00000520755 CHTOPQ9Y3Y2 248 aaKnown RBP10.13□□□□□ -0.79
LSM1-203ENST00000520755 IGLV5-45A0A087WSX0 123 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 IGHV3OR16-9A0A0B4J2B5 98 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 C11orf86A6NJI1 115 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 F8VRH5 84 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 KRTDAPP60985 99 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 CD164L2Q6UWJ8 174 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 PMCHL2Q9BQD1 86 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 CHAC1Q9BUX1 264 aa10.12□□□□□ -0.79
LSM1-203ENST00000520755 TINCRA0A1B0GVN0 87 aa10.11□□□□□ -0.79
LSM1-203ENST00000520755 LRCOL1A6NCL2 159 aa10.11□□□□□ -0.79
LSM1-203ENST00000520755 WFDC2Q14508 124 aa10.11□□□□□ -0.79
LSM1-203ENST00000520755 LINC01545Q5VT33 79 aa10.11□□□□□ -0.79
LSM1-203ENST00000520755 PET117Q6UWS5 81 aa10.1□□□□□ -0.79
LSM1-203ENST00000520755 CDKN2A-AS1Q9UH64 79 aa10.1□□□□□ -0.79
LSM1-203ENST00000520755 ZNF22P17026 224 aaPredicted RBP10.09□□□□□ -0.79
LSM1-203ENST00000520755 HERVK_113P63121 156 aa10.09□□□□□ -0.79
LSM1-203ENST00000520755 C5orf38Q86SI9 138 aa10.09□□□□□ -0.79
LSM1-203ENST00000520755 OR10D4PQ8NGN7 298 aa10.09□□□□□ -0.79
LSM1-203ENST00000520755 HECTD4Q9Y4D8 3996 aa10.08□□□□□ -0.8
LSM1-203ENST00000520755 SEC11AP67812 179 aa10.08□□□□□ -0.8
LSM1-203ENST00000520755 C15orf56Q8N910 161 aa10.08□□□□□ -0.8
LSM1-203ENST00000520755 GEMIN7Q9H840 131 aaKnown RBP10.08□□□□□ -0.8
LSM1-203ENST00000520755 A0A087WZ39 114 aa10.07□□□□□ -0.8
LSM1-203ENST00000520755 COX7A2LO14548 114 aa10.07□□□□□ -0.8
LSM1-203ENST00000520755 FUSP35637 526 aaKnown RBP eCLIP10.07□□□□□ -0.8
LSM1-203ENST00000520755 KRTAP10-2P60368 255 aa10.07□□□□□ -0.8
LSM1-203ENST00000520755 LINC00469Q8N7U9 141 aa10.07□□□□□ -0.8
LSM1-203ENST00000520755 Q8N814 137 aa10.07□□□□□ -0.8
LSM1-203ENST00000520755 USP17L23D6RBM5 183 aa10.06□□□□□ -0.8
LSM1-203ENST00000520755 DPM2O94777 84 aa10.06□□□□□ -0.8
LSM1-203ENST00000520755 SMIM1B2RUZ4 78 aa10.05□□□□□ -0.8
LSM1-203ENST00000520755 DYNC1H1Q14204 4646 aaKnown RBP10.04□□□□□ -0.8
LSM1-203ENST00000520755 DNAH5Q8TE73 4624 aa10.04□□□□□ -0.8
LSM1-203ENST00000520755 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.04□□□□□ -0.8
LSM1-203ENST00000520755 IGKCP01834 107 aa10.04□□□□□ -0.8
LSM1-203ENST00000520755 SPINK8P0C7L1 97 aa10.04□□□□□ -0.8
LSM1-203ENST00000520755 PLNP26678 52 aa10.04□□□□□ -0.8
LSM1-203ENST00000520755 PKHD1P08F94 4074 aa10.03□□□□□ -0.8
LSM1-203ENST00000520755 TMEM170BQ5T4T1 132 aa10.03□□□□□ -0.8
LSM1-203ENST00000520755 LINC01561Q8N1V8 128 aa10.03□□□□□ -0.8
LSM1-203ENST00000520755 IGHV3-64A0A075B6Q5 118 aa10.02□□□□□ -0.81
LSM1-203ENST00000520755 GVQW2A0A096LPI5 108 aaPredicted RBP10.02□□□□□ -0.81
LSM1-203ENST00000520755 IGHV1-58A0A0C4DH39 117 aa10.02□□□□□ -0.81
LSM1-203ENST00000520755 TMEM223A0PJW6 202 aa10.02□□□□□ -0.81
LSM1-203ENST00000520755 C16orf90A8MZG2 172 aa10.02□□□□□ -0.81
LSM1-203ENST00000520755 C14orf177Q52M58 125 aa10.02□□□□□ -0.81
LSM1-203ENST00000520755 PGPEP1Q9NXJ5 209 aa10.02□□□□□ -0.81
LSM1-203ENST00000520755 IGLV5-52A0A0A0MRZ9 124 aa10.01□□□□□ -0.81
LSM1-203ENST00000520755 IGLV5-39A0A0G2JS06 123 aa10.01□□□□□ -0.81
LSM1-203ENST00000520755 C20orf202A1L168 122 aa10.01□□□□□ -0.81
LSM1-203ENST00000520755 MALP21145 153 aa10.01□□□□□ -0.81
LSM1-203ENST00000520755 HIGD2BQ4VC39 106 aa10.01□□□□□ -0.81
LSM1-203ENST00000520755 ATOH7Q8N100 152 aa10.01□□□□□ -0.81
LSM1-203ENST00000520755 H3BRM9 83 aa10□□□□□ -0.81
LSM1-203ENST00000520755 CFAP161Q6P656 301 aa10□□□□□ -0.81
LSM1-203ENST00000520755 NTN5Q8WTR8 489 aaPredicted RBP10□□□□□ -0.81
LSM1-203ENST00000520755 ORAOV1Q8WV07 137 aa10□□□□□ -0.81
LSM1-203ENST00000520755 LINC00526Q96FQ7 95 aa10□□□□□ -0.81
LSM1-203ENST00000520755 LOC105371267A0A1B0GV96 52 aa9.99□□□□□ -0.81
LSM1-203ENST00000520755 hDV102S1A0JD36 115 aa9.99□□□□□ -0.81
LSM1-203ENST00000520755 KIAA0087Q14695 138 aa9.99□□□□□ -0.81
LSM1-203ENST00000520755 JOSD1Q15040 202 aaPredicted RBP9.99□□□□□ -0.81
LSM1-203ENST00000520755 CDPF1Q6NVV7 123 aa9.99□□□□□ -0.81
LSM1-203ENST00000520755 BIRC6Q9NR09 4857 aa9.99□□□□□ -0.81
LSM1-203ENST00000520755 APOMO95445 188 aa9.98□□□□□ -0.81
LSM1-203ENST00000520755 SPAG11BQ08648 103 aa9.98□□□□□ -0.81
LSM1-203ENST00000520755 PYY3Q5JQD4 70 aa9.98□□□□□ -0.81
LSM1-203ENST00000520755 SCGB1D1O95968 90 aa9.97□□□□□ -0.81
LSM1-203ENST00000520755 SLPIP03973 132 aa9.97□□□□□ -0.81
LSM1-203ENST00000520755 TSPEAR-AS2P59090 65 aa9.97□□□□□ -0.81
LSM1-203ENST00000520755 STPG4Q8N801 248 aa9.97□□□□□ -0.81
LSM1-203ENST00000520755 MAJINQ3KP22 176 aa9.96□□□□□ -0.82
LSM1-203ENST00000520755 Q8IZM0 81 aa9.96□□□□□ -0.82
LSM1-203ENST00000520755 GCSHP23434 173 aa9.95□□□□□ -0.82
LSM1-203ENST00000520755 AKR1D1P51857 326 aa9.95□□□□□ -0.82
LSM1-203ENST00000520755 ANKRD39Q53RE8 183 aa9.95□□□□□ -0.82
LSM1-203ENST00000520755 COX7B2Q8TF08 81 aa9.95□□□□□ -0.82
LSM1-203ENST00000520755 TOMM7Q9P0U1 55 aa9.95□□□□□ -0.82
LSM1-203ENST00000520755 LRP1BQ9NZR2 4599 aa9.94□□□□□ -0.82
LSM1-203ENST00000520755 IGKV2D-26A0A0A0MRZ7 120 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 283.6 ms