RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LINC00242Q5T6M2 205 aa9.27□□□□□ -0.93
NUP54-216ENST00000514901 C5orf38Q86SI9 138 aa9.27□□□□□ -0.93
NUP54-216ENST00000514901 C9orf163Q8N9P6 203 aa9.27□□□□□ -0.93
NUP54-216ENST00000514901 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.26□□□□□ -0.93
NUP54-216ENST00000514901 ZNF561-AS1K7EIQ3 104 aa9.26□□□□□ -0.93
NUP54-216ENST00000514901 SCO1O75880 301 aa9.26□□□□□ -0.93
NUP54-216ENST00000514901 HIGD2BQ4VC39 106 aa9.26□□□□□ -0.93
NUP54-216ENST00000514901 LINC00173Q6ZV60 143 aa9.26□□□□□ -0.93
NUP54-216ENST00000514901 FAM19A3Q7Z5A8 133 aa9.26□□□□□ -0.93
NUP54-216ENST00000514901 BAGE3Q86Y29 109 aa9.26□□□□□ -0.93
NUP54-216ENST00000514901 DNAH8Q96JB1 4490 aa9.26□□□□□ -0.93
NUP54-216ENST00000514901 APOBP04114 4563 aaKnown RBP9.25□□□□□ -0.93
NUP54-216ENST00000514901 ZC2HC1BQ5TFG8 222 aa9.25□□□□□ -0.93
NUP54-216ENST00000514901 LINC01561Q8N1V8 128 aa9.25□□□□□ -0.93
NUP54-216ENST00000514901 A0A087WZ39 114 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 A0A096LNJ9 63 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 ATP5LO75964 103 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 SLPIP03973 132 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 HERVK_113P63121 156 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 PMVKQ15126 192 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 OR10D4PQ8NGN7 298 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 CST9LQ9H4G1 147 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 HSPG2P98160 4391 aa9.24□□□□□ -0.93
NUP54-216ENST00000514901 IGHV3-64A0A075B6Q5 118 aa9.23□□□□□ -0.93
NUP54-216ENST00000514901 COX6A2Q02221 97 aa9.23□□□□□ -0.93
NUP54-216ENST00000514901 PDZD11Q5EBL8 140 aa9.23□□□□□ -0.93
NUP54-216ENST00000514901 GEMIN7Q9H840 131 aaKnown RBP9.23□□□□□ -0.93
NUP54-216ENST00000514901 KIAA1109Q2LD37 5005 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 F8WDY8 70 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 HSBP1O75506 76 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 PMCHL1Q16048 86 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 LINC01620Q4KN68 170 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 Q6ZSA8 131 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 C2orf48Q96LS8 159 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 PKIGQ9Y2B9 76 aa9.22□□□□□ -0.93
NUP54-216ENST00000514901 TINCRA0A1B0GVN0 87 aa9.21□□□□□ -0.94
NUP54-216ENST00000514901 XGP55808 180 aa9.21□□□□□ -0.94
NUP54-216ENST00000514901 SYCNQ0VAF6 134 aa9.21□□□□□ -0.94
NUP54-216ENST00000514901 SDIM1Q6ZPB5 146 aa9.21□□□□□ -0.94
NUP54-216ENST00000514901 RYR1P21817 5038 aa9.2□□□□□ -0.94
NUP54-216ENST00000514901 IGLV4-69A0A075B6H9 119 aa9.2□□□□□ -0.94
NUP54-216ENST00000514901 SPAG11BQ08648 103 aa9.2□□□□□ -0.94
NUP54-216ENST00000514901 ORAOV1Q8WV07 137 aa9.2□□□□□ -0.94
NUP54-216ENST00000514901 CARD19Q96LW7 228 aa9.2□□□□□ -0.94
NUP54-216ENST00000514901 FAM30AQ9NZY2 134 aa9.2□□□□□ -0.94
NUP54-216ENST00000514901 A0A0J9YXV3 536 aa9.19□□□□□ -0.94
NUP54-216ENST00000514901 ATP6V1G1O75348 118 aa9.19□□□□□ -0.94
NUP54-216ENST00000514901 NDUFA6P56556 154 aa9.19□□□□□ -0.94
NUP54-216ENST00000514901 LINC00526Q96FQ7 95 aa9.19□□□□□ -0.94
NUP54-216ENST00000514901 CAMK2N2Q96S95 79 aa9.19□□□□□ -0.94
NUP54-216ENST00000514901 SERF1AO75920 110 aa9.18□□□□□ -0.94
NUP54-216ENST00000514901 PACRGQ96M98 296 aaPredicted RBP9.18□□□□□ -0.94
NUP54-216ENST00000514901 LINC00469Q8N7U9 141 aa9.17□□□□□ -0.94
NUP54-216ENST00000514901 IFI27L1Q96BM0 104 aa9.17□□□□□ -0.94
NUP54-216ENST00000514901 CHAC1Q9BUX1 264 aa9.17□□□□□ -0.94
NUP54-216ENST00000514901 CDKN2A-AS1Q9UH64 79 aa9.17□□□□□ -0.94
NUP54-216ENST00000514901 HERC2O95714 4834 aa9.17□□□□□ -0.94
NUP54-216ENST00000514901 IGLV5-45A0A087WSX0 123 aa9.16□□□□□ -0.94
NUP54-216ENST00000514901 NDUFA1O15239 70 aa9.16□□□□□ -0.94
NUP54-216ENST00000514901 IGLC3P0DOY3 106 aa9.16□□□□□ -0.94
NUP54-216ENST00000514901 RNF151Q2KHN1 245 aa9.16□□□□□ -0.94
NUP54-216ENST00000514901 FAM19A2Q8N3H0 131 aa9.16□□□□□ -0.94
NUP54-216ENST00000514901 H3BRM9 83 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BKO60814 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BJP06899 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 PRSS2P07478 247 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BOP23527 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BBP33778 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BDP58876 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BCP62807 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 KIAA0087Q14695 138 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST2H2BEQ16778 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.15□□□□□ -0.94
NUP54-216ENST00000514901 Q6ZRU5 148 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BHQ93079 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BNQ99877 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 HIST1H2BMQ99879 126 aa9.15□□□□□ -0.94
NUP54-216ENST00000514901 MRPL35Q9NZE8 188 aaKnown RBP9.15□□□□□ -0.94
NUP54-216ENST00000514901 TRAV12-1A0A0B4J245 112 aa9.14□□□□□ -0.95
NUP54-216ENST00000514901 LEPROTL1O95214 131 aa9.14□□□□□ -0.95
NUP54-216ENST00000514901 LINC00310P59036 64 aa9.14□□□□□ -0.95
NUP54-216ENST00000514901 CIRBPQ14011 172 aaKnown RBP9.14□□□□□ -0.95
NUP54-216ENST00000514901 LINC00474Q9P2X8 69 aa9.14□□□□□ -0.95
NUP54-216ENST00000514901 HSPB8Q9UJY1 196 aa9.14□□□□□ -0.95
NUP54-216ENST00000514901 LOC107984640A0A0U1RRK4 108 aa9.13□□□□□ -0.95
NUP54-216ENST00000514901 C6orf226Q5I0X4 101 aa9.13□□□□□ -0.95
NUP54-216ENST00000514901 SCXQ7RTU7 201 aa9.13□□□□□ -0.95
NUP54-216ENST00000514901 Q8IZM0 81 aa9.13□□□□□ -0.95
NUP54-216ENST00000514901 Q8N1X5 172 aa9.13□□□□□ -0.95
NUP54-216ENST00000514901 DPH3Q96FX2 82 aa9.13□□□□□ -0.95
NUP54-216ENST00000514901 NUPR1O60356 82 aa9.12□□□□□ -0.95
NUP54-216ENST00000514901 CIRBP-AS1Q8TBR5 109 aa9.12□□□□□ -0.95
NUP54-216ENST00000514901 TOMM7Q9P0U1 55 aa9.12□□□□□ -0.95
NUP54-216ENST00000514901 CHTOPQ9Y3Y2 248 aaKnown RBP9.12□□□□□ -0.95
NUP54-216ENST00000514901 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.12□□□□□ -0.95
NUP54-216ENST00000514901 TRBV30A0A0K0K1B3 111 aa9.11□□□□□ -0.95
NUP54-216ENST00000514901 SMIM1B2RUZ4 78 aa9.11□□□□□ -0.95
NUP54-216ENST00000514901 CXCL5P42830 114 aa9.11□□□□□ -0.95
NUP54-216ENST00000514901 CKS1BP61024 79 aa9.11□□□□□ -0.95
NUP54-216ENST00000514901 HAMPP81172 84 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms