RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 NDUFC2-KCTD14E9PQ53 114 aa5.73□□□□□ -1.49
LIMCH1-219ENST00000514096 Q9UF83 564 aa5.73□□□□□ -1.49
LIMCH1-219ENST00000514096 SNURFQ9Y675 71 aa5.73□□□□□ -1.49
LIMCH1-219ENST00000514096 TRAV26-2A0A0B4J265 109 aa5.73□□□□□ -1.49
LIMCH1-219ENST00000514096 ARMS2P0C7Q2 107 aa5.73□□□□□ -1.49
LIMCH1-219ENST00000514096 KPRPQ5T749 579 aaPredicted RBP5.73□□□□□ -1.49
LIMCH1-219ENST00000514096 TRAV23DV6A0A075B6W5 121 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 A0A087WZ39 114 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 CRYGAP11844 174 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 RNASE4P34096 147 aaKnown RBP5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 A0A0J9YY99 117 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 K7EQG2 157 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 SERP2Q8N6R1 65 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 PLEKHB2Q96CS7 222 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 OVOL2Q9BRP0 275 aa5.72□□□□□ -1.49
LIMCH1-219ENST00000514096 PIGBOS1A0A0B4J2F0 54 aa5.71□□□□□ -1.49
LIMCH1-219ENST00000514096 K7EMT4 169 aa5.71□□□□□ -1.49
LIMCH1-219ENST00000514096 DCANP1Q8TF63 244 aa5.71□□□□□ -1.49
LIMCH1-219ENST00000514096 IGF2BP2-AS1Q96M15 143 aa5.71□□□□□ -1.49
LIMCH1-219ENST00000514096 VPREB1P12018 145 aa5.71□□□□□ -1.5
LIMCH1-219ENST00000514096 ORMDL3Q8N138 153 aa5.71□□□□□ -1.5
LIMCH1-219ENST00000514096 IGHV4-28A0A0C4DH34 117 aa5.71□□□□□ -1.5
LIMCH1-219ENST00000514096 CLEC2BQ92478 149 aa5.71□□□□□ -1.5
LIMCH1-219ENST00000514096 PAXXQ9BUH6 204 aa5.71□□□□□ -1.5
LIMCH1-219ENST00000514096 Q6ZTC4 211 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 LINC00643Q86TS7 51 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 FMC1Q96HJ9 113 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 C19orf73Q9NVV2 129 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 DNAL4O96015 105 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 GHRHP01286 108 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 SLC25A29Q8N8R3 303 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 A0A087WWL8 130 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 NEXN-AS1Q8NBZ9 246 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 CELA1Q9UNI1 258 aa5.7□□□□□ -1.5
LIMCH1-219ENST00000514096 TRAV12-1A0A0B4J245 112 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 CFC1BP0CG36 223 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 CFC1P0CG37 223 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 C11orf1Q9H5F2 150 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 IGHV3-73A0A0B4J1V6 119 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 NOP10Q9NPE3 64 aaKnown RBP5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 WDR83OSQ9Y284 106 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 RPL18AQ02543 176 aaKnown RBP5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 COPS9Q8WXC6 57 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 SERP1Q9Y6X1 66 aa5.69□□□□□ -1.5
LIMCH1-219ENST00000514096 TRAV21A0A0B4J279 112 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 TRBV10-2A0A0K0K1G8 114 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 USP17L23D6RBM5 183 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 CASC10Q5T4H9 136 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 FAM222AQ5U5X8 452 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 LY96Q9Y6Y9 160 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 UBE2DNLQ8IWF7 75 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 TMEM75Q8N9X5 138 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 TRGV2A0A075B6R0 118 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 H3BRN7 92 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 PSPHP1O15172 72 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 RBM12B-AS1Q9P1G2 102 aa5.68□□□□□ -1.5
LIMCH1-219ENST00000514096 KMT2CQ8NEZ4 4911 aaKnown RBP5.67□□□□□ -1.5
LIMCH1-219ENST00000514096 PLAC8L1A1L4L8 177 aa5.67□□□□□ -1.5
LIMCH1-219ENST00000514096 FHL2Q14192 279 aa5.67□□□□□ -1.5
LIMCH1-219ENST00000514096 IGHV3-16A0A0C4DH30 117 aa5.67□□□□□ -1.5
LIMCH1-219ENST00000514096 ATP5G1P05496 136 aa5.67□□□□□ -1.5
LIMCH1-219ENST00000514096 THAP8Q8NA92 274 aa5.67□□□□□ -1.5
LIMCH1-219ENST00000514096 TM2D3Q9BRN9 247 aa5.67□□□□□ -1.5
LIMCH1-219ENST00000514096 TRGV1A0A0A0MS02 117 aa5.66□□□□□ -1.5
LIMCH1-219ENST00000514096 A0A0B4J2C4 111 aa5.66□□□□□ -1.5
LIMCH1-219ENST00000514096 FAM104BQ5XKR9 115 aa5.66□□□□□ -1.5
LIMCH1-219ENST00000514096 SCGB3A1Q96QR1 104 aa5.66□□□□□ -1.5
LIMCH1-219ENST00000514096 A0A0J9YX75 114 aa5.66□□□□□ -1.5
LIMCH1-219ENST00000514096 TRBV7-7A0A0K0K1E9 115 aa5.66□□□□□ -1.5
LIMCH1-219ENST00000514096 POM121L12Q8N7R1 296 aa5.66□□□□□ -1.5
LIMCH1-219ENST00000514096 TRBV7-3A0A075B6L6 115 aa5.65□□□□□ -1.5
LIMCH1-219ENST00000514096 DEFB131BA0A096LNP1 70 aa5.65□□□□□ -1.5
LIMCH1-219ENST00000514096 GATA1P15976 413 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-219ENST00000514096 IMUPQ9GZP8 106 aa5.65□□□□□ -1.5
LIMCH1-219ENST00000514096 DNAH9Q9NYC9 4486 aa5.65□□□□□ -1.51
LIMCH1-219ENST00000514096 TRBV7-6A0A0J9YX20 115 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 F8WEM9 126 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 UBE2D3P61077 147 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 UBE2D2P62837 147 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 SERTAD4-AS1Q5TG53 156 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 C11orf52Q96A22 123 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 INSP01308 110 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 IGLV2-8P01709 118 aa5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 GIG44P09565 113 aaPredicted RBP5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 RNASE13Q5GAN3 156 aaKnown RBP5.64□□□□□ -1.51
LIMCH1-219ENST00000514096 PRR20EP86478 221 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 PRR20CP86479 221 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 PRR20DP86480 221 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 PRR20BP86481 221 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 PRR20AP86496 221 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 LINC00322Q6ZN03 302 aaPredicted RBP5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 C19orf71A6NCJ1 209 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 FAM74A4Q5TZK3 123 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 LYZL1Q6UWQ5 148 aa5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 SRRM2Q9UQ35 2752 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-219ENST00000514096 C1orf158Q8N1D5 194 aa5.62□□□□□ -1.51
LIMCH1-219ENST00000514096 GNRH2O43555 120 aa5.62□□□□□ -1.51
LIMCH1-219ENST00000514096 CXCL5P42830 114 aa5.62□□□□□ -1.51
LIMCH1-219ENST00000514096 MRPL51Q4U2R6 128 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms