RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 TINCRA0A1B0GVN0 87 aa12.92□□□□□ -0.34
USP39-218ENST00000493829 C20orf202A1L168 122 aa12.92□□□□□ -0.34
USP39-218ENST00000493829 C5orf38Q86SI9 138 aa12.92□□□□□ -0.34
USP39-218ENST00000493829 DPM2O94777 84 aa12.91□□□□□ -0.34
USP39-218ENST00000493829 HERVK_113P63121 156 aa12.91□□□□□ -0.34
USP39-218ENST00000493829 FOXI1Q12951 378 aa12.91□□□□□ -0.34
USP39-218ENST00000493829 KRTAP26-1Q6PEX3 210 aa12.91□□□□□ -0.34
USP39-218ENST00000493829 CD164L2Q6UWJ8 174 aa12.91□□□□□ -0.34
USP39-218ENST00000493829 ATOH7Q8N100 152 aa12.91□□□□□ -0.34
USP39-218ENST00000493829 C6orf223Q8N319 242 aa12.91□□□□□ -0.34
USP39-218ENST00000493829 DNAH6Q9C0G6 4158 aa12.9□□□□□ -0.34
USP39-218ENST00000493829 PSCAO43653 123 aa12.9□□□□□ -0.34
USP39-218ENST00000493829 SCGB1D1O95968 90 aa12.9□□□□□ -0.34
USP39-218ENST00000493829 SEC11AP67812 179 aa12.9□□□□□ -0.34
USP39-218ENST00000493829 FAM19A3Q7Z5A8 133 aa12.9□□□□□ -0.34
USP39-218ENST00000493829 CDKN2A-AS1Q9UH64 79 aa12.9□□□□□ -0.34
USP39-218ENST00000493829 HYDINQ4G0P3 5121 aa12.9□□□□□ -0.34
USP39-218ENST00000493829 IGKCP01834 107 aa12.89□□□□□ -0.35
USP39-218ENST00000493829 ZNF22P17026 224 aaPredicted RBP12.89□□□□□ -0.35
USP39-218ENST00000493829 PLNP26678 52 aa12.89□□□□□ -0.35
USP39-218ENST00000493829 TMEM170BQ5T4T1 132 aa12.89□□□□□ -0.35
USP39-218ENST00000493829 NFE4Q86UQ8 179 aa12.89□□□□□ -0.35
USP39-218ENST00000493829 SACSQ9NZJ4 4579 aa12.89□□□□□ -0.35
USP39-218ENST00000493829 C1orf134Q5TEV5 83 aa12.89□□□□□ -0.35
USP39-218ENST00000493829 IGHV3OR16-9A0A0B4J2B5 98 aa12.88□□□□□ -0.35
USP39-218ENST00000493829 COX7A2LO14548 114 aa12.88□□□□□ -0.35
USP39-218ENST00000493829 TM2D2Q9BX73 214 aa12.88□□□□□ -0.35
USP39-218ENST00000493829 SPINK8P0C7L1 97 aa12.87□□□□□ -0.35
USP39-218ENST00000493829 MAPKAPK5-AS1Q8N8E1 139 aa12.87□□□□□ -0.35
USP39-218ENST00000493829 IGHV3-64A0A075B6Q5 118 aa12.86□□□□□ -0.35
USP39-218ENST00000493829 LECT2O14960 151 aa12.86□□□□□ -0.35
USP39-218ENST00000493829 MALP21145 153 aa12.86□□□□□ -0.35
USP39-218ENST00000493829 Q6ZRN7 208 aaPredicted RBP12.86□□□□□ -0.35
USP39-218ENST00000493829 LOC105371267A0A1B0GV96 52 aa12.86□□□□□ -0.35
USP39-218ENST00000493829 IGLV5-45A0A087WSX0 123 aa12.85□□□□□ -0.35
USP39-218ENST00000493829 COX11Q9Y6N1 276 aa12.85□□□□□ -0.35
USP39-218ENST00000493829 DNAH10Q8IVF4 4471 aa12.84□□□□□ -0.35
USP39-218ENST00000493829 A0A087WZ39 114 aa12.83□□□□□ -0.35
USP39-218ENST00000493829 H3BRM9 83 aa12.83□□□□□ -0.35
USP39-218ENST00000493829 KMT2CQ8NEZ4 4911 aaKnown RBP12.83□□□□□ -0.36
USP39-218ENST00000493829 WFDC2Q14508 124 aa12.82□□□□□ -0.36
USP39-218ENST00000493829 JOSD1Q15040 202 aaPredicted RBP12.82□□□□□ -0.36
USP39-218ENST00000493829 PYY3Q5JQD4 70 aa12.82□□□□□ -0.36
USP39-218ENST00000493829 STPG4Q8N801 248 aa12.82□□□□□ -0.36
USP39-218ENST00000493829 hDV102S1A0JD36 115 aa12.81□□□□□ -0.36
USP39-218ENST00000493829 SMIM1B2RUZ4 78 aa12.81□□□□□ -0.36
USP39-218ENST00000493829 USP17L23D6RBM5 183 aa12.81□□□□□ -0.36
USP39-218ENST00000493829 MAJINQ3KP22 176 aa12.81□□□□□ -0.36
USP39-218ENST00000493829 HIGD2BQ4VC39 106 aa12.81□□□□□ -0.36
USP39-218ENST00000493829 DNAH2Q9P225 4427 aa12.81□□□□□ -0.36
USP39-218ENST00000493829 TMEM223A0PJW6 202 aa12.8□□□□□ -0.36
USP39-218ENST00000493829 C15orf56Q8N910 161 aa12.8□□□□□ -0.36
USP39-218ENST00000493829 ORAOV1Q8WV07 137 aa12.8□□□□□ -0.36
USP39-218ENST00000493829 CDPF1Q6NVV7 123 aa12.8□□□□□ -0.36
USP39-218ENST00000493829 LINC00526Q96FQ7 95 aa12.8□□□□□ -0.36
USP39-218ENST00000493829 TOMM7Q9P0U1 55 aa12.8□□□□□ -0.36
USP39-218ENST00000493829 RTL8CO15255 209 aa12.79□□□□□ -0.36
USP39-218ENST00000493829 RYR2Q92736 4967 aa12.78□□□□□ -0.36
USP39-218ENST00000493829 IGHV1-58A0A0C4DH39 117 aa12.77□□□□□ -0.36
USP39-218ENST00000493829 APOMO95445 188 aa12.77□□□□□ -0.36
USP39-218ENST00000493829 HERVK_113P61574 105 aa12.77□□□□□ -0.36
USP39-218ENST00000493829 SPAG11BQ08648 103 aa12.77□□□□□ -0.37
USP39-218ENST00000493829 LRCOL1A6NCL2 159 aa12.75□□□□□ -0.37
USP39-218ENST00000493829 TNP2Q05952 138 aa12.75□□□□□ -0.37
USP39-218ENST00000493829 ANKRD39Q53RE8 183 aa12.75□□□□□ -0.37
USP39-218ENST00000493829 CFAP161Q6P656 301 aa12.74□□□□□ -0.37
USP39-218ENST00000493829 LINC01561Q8N1V8 128 aa12.74□□□□□ -0.37
USP39-218ENST00000493829 IGLV5-39A0A0G2JS06 123 aa12.73□□□□□ -0.37
USP39-218ENST00000493829 HSBP1L1C9JCN9 74 aa12.73□□□□□ -0.37
USP39-218ENST00000493829 PRSS2P07478 247 aa12.73□□□□□ -0.37
USP39-218ENST00000493829 COX7B2Q8TF08 81 aa12.73□□□□□ -0.37
USP39-218ENST00000493829 A0A087WTM6 91 aa12.73□□□□□ -0.37
USP39-218ENST00000493829 TSPEAR-AS2P59090 65 aa12.73□□□□□ -0.37
USP39-218ENST00000493829 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.72□□□□□ -0.37
USP39-218ENST00000493829 GVQW2A0A096LPI5 108 aaPredicted RBP12.72□□□□□ -0.37
USP39-218ENST00000493829 IGKV2D-26A0A0A0MRZ7 120 aa12.72□□□□□ -0.37
USP39-218ENST00000493829 ZNF561-AS1K7EIQ3 104 aa12.72□□□□□ -0.37
USP39-218ENST00000493829 PAM16Q9Y3D7 125 aa12.72□□□□□ -0.37
USP39-218ENST00000493829 E9PLD3 99 aa12.71□□□□□ -0.37
USP39-218ENST00000493829 NMUP48645 174 aa12.71□□□□□ -0.37
USP39-218ENST00000493829 VAMP8Q9BV40 100 aa12.71□□□□□ -0.37
USP39-218ENST00000493829 FRAS1Q86XX4 4008 aa12.7□□□□□ -0.38
USP39-218ENST00000493829 LEPROTO15243 131 aa12.7□□□□□ -0.38
USP39-218ENST00000493829 C2orf82Q6UX34 121 aa12.7□□□□□ -0.38
USP39-218ENST00000493829 KIAA0087Q14695 138 aa12.7□□□□□ -0.38
USP39-218ENST00000493829 C6orf226Q5I0X4 101 aa12.7□□□□□ -0.38
USP39-218ENST00000493829 Q8IZM0 81 aa12.7□□□□□ -0.38
USP39-218ENST00000493829 TTTY13Q9BZ97 58 aa12.69□□□□□ -0.38
USP39-218ENST00000493829 DNAH17Q9UFH2 4485 aa12.68□□□□□ -0.38
USP39-218ENST00000493829 J3QQQ9 107 aa12.68□□□□□ -0.38
USP39-218ENST00000493829 LGALS3P17931 250 aaKnown RBP12.68□□□□□ -0.38
USP39-218ENST00000493829 FUSP35637 526 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP39-218ENST00000493829 Q8N814 137 aa12.68□□□□□ -0.38
USP39-218ENST00000493829 PLEKHB2Q96CS7 222 aa12.68□□□□□ -0.38
USP39-218ENST00000493829 SMIM6P0DI80 62 aa12.67□□□□□ -0.38
USP39-218ENST00000493829 CKS1BP61024 79 aa12.67□□□□□ -0.38
USP39-218ENST00000493829 C14orf177Q52M58 125 aa12.67□□□□□ -0.38
USP39-218ENST00000493829 SPATA45Q537H7 98 aa12.67□□□□□ -0.38
USP39-218ENST00000493829 CAMK2N2Q96S95 79 aa12.67□□□□□ -0.38
USP39-218ENST00000493829 NTN5Q8WTR8 489 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms