RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 C10orf91Q5T1B1 145 aa15.61■□□□□ 0.09
UPF3A-209ENST00000492270 Q6ZRU5 148 aa15.61■□□□□ 0.09
UPF3A-209ENST00000492270 PLAC8Q9NZF1 115 aa15.61■□□□□ 0.09
UPF3A-209ENST00000492270 TRAV9-1A0A075B6T8 112 aa15.6■□□□□ 0.09
UPF3A-209ENST00000492270 HNRNPA3P51991 378 aaKnown RBP15.6■□□□□ 0.09
UPF3A-209ENST00000492270 IGHV3OR16-9A0A0B4J2B5 98 aa15.59■□□□□ 0.09
UPF3A-209ENST00000492270 C2orf66Q6UXQ4 117 aa15.59■□□□□ 0.09
UPF3A-209ENST00000492270 TMEM141Q96I45 108 aa15.58■□□□□ 0.08
UPF3A-209ENST00000492270 CAMK2N2Q96S95 79 aa15.58■□□□□ 0.08
UPF3A-209ENST00000492270 CYSLTR1Q9Y271 337 aa15.58■□□□□ 0.08
UPF3A-209ENST00000492270 CARHSP1Q9Y2V2 147 aaKnown RBP15.58■□□□□ 0.08
UPF3A-209ENST00000492270 APOMO95445 188 aa15.57■□□□□ 0.08
UPF3A-209ENST00000492270 S100PP25815 95 aa15.57■□□□□ 0.08
UPF3A-209ENST00000492270 SPAG11BQ08648 103 aa15.57■□□□□ 0.08
UPF3A-209ENST00000492270 ORMDL2Q53FV1 153 aa15.57■□□□□ 0.08
UPF3A-209ENST00000492270 ZC2HC1BQ5TFG8 222 aa15.57■□□□□ 0.08
UPF3A-209ENST00000492270 STPG4Q8N801 248 aa15.57■□□□□ 0.08
UPF3A-209ENST00000492270 NXT2Q9NPJ8 142 aaKnown RBP15.56■□□□□ 0.08
UPF3A-209ENST00000492270 ORAOV1Q8WV07 137 aa15.55■□□□□ 0.08
UPF3A-209ENST00000492270 C2orf48Q96LS8 159 aa15.55■□□□□ 0.08
UPF3A-209ENST00000492270 RPS10P5Q9NQ39 176 aa15.55■□□□□ 0.08
UPF3A-209ENST00000492270 LINC00242Q5T6M2 205 aa15.54■□□□□ 0.08
UPF3A-209ENST00000492270 TEX43Q6ZNM6 134 aa15.54■□□□□ 0.08
UPF3A-209ENST00000492270 LINC00173Q6ZV60 143 aa15.54■□□□□ 0.08
UPF3A-209ENST00000492270 OR10D4PQ8NGN7 298 aa15.54■□□□□ 0.08
UPF3A-209ENST00000492270 LRP1Q07954 4544 aaKnown RBP15.54■□□□□ 0.08
UPF3A-209ENST00000492270 KRTAP29-1A8MX34 341 aaPredicted RBP15.53■□□□□ 0.08
UPF3A-209ENST00000492270 J3QL48 77 aa15.53■□□□□ 0.08
UPF3A-209ENST00000492270 K7EMI3 77 aa15.53■□□□□ 0.08
UPF3A-209ENST00000492270 GNB1LQ9BYB4 327 aa15.53■□□□□ 0.08
UPF3A-209ENST00000492270 PKIGQ9Y2B9 76 aa15.53■□□□□ 0.08
UPF3A-209ENST00000492270 TGIF2-C20orf24A0A0A6YYL0 155 aa15.52■□□□□ 0.08
UPF3A-209ENST00000492270 RHEBQ15382 184 aa15.52■□□□□ 0.08
UPF3A-209ENST00000492270 A0A0J9YXV3 536 aa15.51■□□□□ 0.07
UPF3A-209ENST00000492270 LOC107984640A0A0U1RRK4 108 aa15.51■□□□□ 0.07
UPF3A-209ENST00000492270 IGIPA6NJ69 53 aa15.51■□□□□ 0.07
UPF3A-209ENST00000492270 UBE2D1P51668 147 aa15.51■□□□□ 0.07
UPF3A-209ENST00000492270 PTTG1IPP53801 180 aa15.5■□□□□ 0.07
UPF3A-209ENST00000492270 GAGE2BQ13066 116 aa15.5■□□□□ 0.07
UPF3A-209ENST00000492270 AMELXQ99217 191 aa15.5■□□□□ 0.07
UPF3A-209ENST00000492270 LINC00474Q9P2X8 69 aa15.5■□□□□ 0.07
UPF3A-209ENST00000492270 FAT3Q8TDW7 4589 aa15.49■□□□□ 0.07
UPF3A-209ENST00000492270 A0A087WZ39 114 aa15.49■□□□□ 0.07
UPF3A-209ENST00000492270 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-209ENST00000492270 Q6ZN92 141 aa15.49■□□□□ 0.07
UPF3A-209ENST00000492270 C2orf88Q9BSF0 95 aa15.49■□□□□ 0.07
UPF3A-209ENST00000492270 ALKBH7Q9BT30 221 aaPredicted RBP15.49■□□□□ 0.07
UPF3A-209ENST00000492270 C7orf33Q8WU49 177 aa15.48■□□□□ 0.07
UPF3A-209ENST00000492270 MRPL18Q9H0U6 180 aaKnown RBP15.48■□□□□ 0.07
UPF3A-209ENST00000492270 VCX2Q9H322 139 aa15.47■□□□□ 0.07
UPF3A-209ENST00000492270 RPL18AQ02543 176 aaKnown RBP15.46■□□□□ 0.07
UPF3A-209ENST00000492270 COX19Q49B96 90 aa15.46■□□□□ 0.07
UPF3A-209ENST00000492270 C10orf25Q5T742 122 aa15.46■□□□□ 0.07
UPF3A-209ENST00000492270 TOMM6Q96B49 74 aa15.46■□□□□ 0.07
UPF3A-209ENST00000492270 APOC3P02656 99 aa15.45■□□□□ 0.06
UPF3A-209ENST00000492270 NPSP0C0P6 89 aa15.45■□□□□ 0.06
UPF3A-209ENST00000492270 FABP9Q0Z7S8 132 aa15.45■□□□□ 0.06
UPF3A-209ENST00000492270 NDUFA1O15239 70 aa15.44■□□□□ 0.06
UPF3A-209ENST00000492270 MT-ND6P03923 174 aa15.44■□□□□ 0.06
UPF3A-209ENST00000492270 KIAA0087Q14695 138 aa15.44■□□□□ 0.06
UPF3A-209ENST00000492270 RNF151Q2KHN1 245 aa15.44■□□□□ 0.06
UPF3A-209ENST00000492270 UNQ6190/PRO20217Q6UXQ8 127 aa15.44■□□□□ 0.06
UPF3A-209ENST00000492270 TIMM17AQ99595 171 aa15.44■□□□□ 0.06
UPF3A-209ENST00000492270 MRPL35Q9NZE8 188 aaKnown RBP15.44■□□□□ 0.06
UPF3A-209ENST00000492270 C6orf48Q9UBA6 75 aa15.42■□□□□ 0.06
UPF3A-209ENST00000492270 A0A1W2PNN7 141 aa15.41■□□□□ 0.06
UPF3A-209ENST00000492270 LINC01546A6NGU7 62 aa15.41■□□□□ 0.06
UPF3A-209ENST00000492270 F8WDY8 70 aa15.41■□□□□ 0.06
UPF3A-209ENST00000492270 OXTP01178 125 aa15.41■□□□□ 0.06
UPF3A-209ENST00000492270 G0S2P27469 103 aa15.41■□□□□ 0.06
UPF3A-209ENST00000492270 FAM19A3Q7Z5A8 133 aa15.41■□□□□ 0.06
UPF3A-209ENST00000492270 PRR3P79522 188 aaKnown RBP15.4■□□□□ 0.06
UPF3A-209ENST00000492270 SCGB3A1Q96QR1 104 aa15.4■□□□□ 0.06
UPF3A-209ENST00000492270 C2orf82Q6UX34 121 aa15.39■□□□□ 0.05
UPF3A-209ENST00000492270 ERASQ7Z444 233 aa15.39■□□□□ 0.05
UPF3A-209ENST00000492270 PAPPA-AS1Q5QFB9 102 aa15.38■□□□□ 0.05
UPF3A-209ENST00000492270 LINC01561Q8N1V8 128 aa15.38■□□□□ 0.05
UPF3A-209ENST00000492270 SNAPINO95295 136 aa15.37■□□□□ 0.05
UPF3A-209ENST00000492270 FA2HQ7L5A8 372 aa15.37■□□□□ 0.05
UPF3A-209ENST00000492270 SVBPQ8N300 66 aa15.37■□□□□ 0.05
UPF3A-209ENST00000492270 NDUFA5Q16718 116 aa15.36■□□□□ 0.05
UPF3A-209ENST00000492270 C9orf116Q5BN46 136 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-209ENST00000492270 Q6ZRP5 223 aa15.36■□□□□ 0.05
UPF3A-209ENST00000492270 TRAPPC1Q9Y5R8 145 aa15.36■□□□□ 0.05
UPF3A-209ENST00000492270 SMCO4Q9NRQ5 59 aa15.35■□□□□ 0.05
UPF3A-209ENST00000492270 CDKN2A-AS1Q9UH64 79 aa15.35■□□□□ 0.05
UPF3A-209ENST00000492270 TLX1NBP0CAT3 122 aa15.34■□□□□ 0.05
UPF3A-209ENST00000492270 HERVK_113P63121 156 aa15.34■□□□□ 0.05
UPF3A-209ENST00000492270 TOMM7Q9P0U1 55 aa15.34■□□□□ 0.05
UPF3A-209ENST00000492270 GEMIN7Q9H840 131 aaKnown RBP15.33■□□□□ 0.04
UPF3A-209ENST00000492270 SEC11AP67812 179 aa15.32■□□□□ 0.04
UPF3A-209ENST00000492270 C18orf32Q8TCD1 76 aa15.32■□□□□ 0.04
UPF3A-209ENST00000492270 URB1-AS1Q96HZ7 61 aa15.32■□□□□ 0.04
UPF3A-209ENST00000492270 TRBV30A0A0K0K1B3 111 aa15.31■□□□□ 0.04
UPF3A-209ENST00000492270 FAM168BA1KXE4 195 aa15.31■□□□□ 0.04
UPF3A-209ENST00000492270 GAGE2EQ4V326 116 aa15.31■□□□□ 0.04
UPF3A-209ENST00000492270 GAGE2DQ9UEU5 116 aa15.31■□□□□ 0.04
UPF3A-209ENST00000492270 PRSS2P07478 247 aa15.3■□□□□ 0.04
UPF3A-209ENST00000492270 PHF5AQ7RTV0 110 aaKnown RBP15.3■□□□□ 0.04
UPF3A-209ENST00000492270 A0A096LNJ9 63 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms