RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 CTAGE3PQ8IX95 158 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 LZICQ8WZA0 190 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 IFI27L1Q96BM0 104 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 TAS2R8Q9NYW2 309 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 NHSQ6T4R5 1651 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 HRNRQ86YZ3 2850 aaPredicted RBP0.29□□□□□ -2.36
CPSF3-205ENST00000489629 IFT172Q9UG01 1749 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 LPAP08519 4548 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 PARP14Q460N5 1801 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 FOCADQ5VW36 1801 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 OVOS2A0A0J9YW53 1432 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 FHAD1B1AJZ9 1412 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 OVOS2Q6IE36 1432 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 ATP10BO94823 1461 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 GOLGA3Q08378 1498 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 FANCD2Q9BXW9 1451 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 MROH2BQ7Z745 1585 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 CLTCQ00610 1675 aaKnown RBP0.28□□□□□ -2.36
CPSF3-205ENST00000489629 ZNF831Q5JPB2 1677 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 SPAG17Q6Q759 2223 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 LCE6AA0A183 80 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 J3QLW9 94 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 M0R2Z0 102 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 MT4P47944 62 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 ELOF1P60002 83 aaKnown RBP0.28□□□□□ -2.36
CPSF3-205ENST00000489629 KRTAP21-1Q3LI58 79 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 Q5VSD8 79 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 LINC01545Q5VT33 79 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 TSKUQ8WUA8 353 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 PPDPFLQ8WWR9 84 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 MAGOHBQ96A72 148 aaKnown RBP0.28□□□□□ -2.36
CPSF3-205ENST00000489629 AKAP6Q13023 2319 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 KNL1Q8NG31 2342 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 MUC17Q685J3 4493 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 MYH7P12883 1935 aa0.28□□□□□ -2.36
CPSF3-205ENST00000489629 MYH9P35579 1960 aaKnown RBP0.28□□□□□ -2.36
CPSF3-205ENST00000489629 UHRF1BP1LA0JNW5 1464 aa0.28□□□□□ -2.37
CPSF3-205ENST00000489629 ADGRL2O95490 1459 aa0.28□□□□□ -2.37
CPSF3-205ENST00000489629 PZPP20742 1482 aa0.28□□□□□ -2.37
CPSF3-205ENST00000489629 NKTRP30414 1462 aaKnown RBP0.28□□□□□ -2.37
CPSF3-205ENST00000489629 DOCK11Q5JSL3 2073 aa0.28□□□□□ -2.37
CPSF3-205ENST00000489629 MAGI3Q5TCQ9 1506 aa0.28□□□□□ -2.37
CPSF3-205ENST00000489629 TNXBP22105 4242 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 ABCA5Q8WWZ7 1642 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 WNK2Q9Y3S1 2297 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 QRICH2Q9H0J4 1663 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 DDX60LQ5H9U9 1706 aaKnown RBP0.27□□□□□ -2.37
CPSF3-205ENST00000489629 DDX60Q8IY21 1712 aaKnown RBP0.27□□□□□ -2.37
CPSF3-205ENST00000489629 PARP4Q9UKK3 1724 aaKnown RBP0.27□□□□□ -2.37
CPSF3-205ENST00000489629 NWD2Q9ULI1 1742 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 LAMB1P07942 1786 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 COL14A1Q05707 1796 aaKnown RBP0.27□□□□□ -2.37
CPSF3-205ENST00000489629 DNAH17Q9UFH2 4485 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 A0A087WTM6 91 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 A0A096LNT2 108 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 ZNF670-ZNF695F2Z2N8 137 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 K7ERU9 68 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 NPFFO15130 113 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 PIN1P1O15428 100 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 PYYP10082 97 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 RPS25P62851 125 aaKnown RBP0.27□□□□□ -2.37
CPSF3-205ENST00000489629 EMX2Q04743 252 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 KLKP1Q107X0 134 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 SMCO1Q147U7 214 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 KRTAP19-6Q3LI70 58 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 MMGT1Q8N4V1 131 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 SDF2Q99470 211 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 COPZ2Q9P299 210 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 NDUFA12Q9UI09 145 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 CCDC171Q6TFL3 1326 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 F5P12259 2224 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 CLIP1P30622 1438 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 TOP2AP11388 1531 aaKnown RBP0.27□□□□□ -2.37
CPSF3-205ENST00000489629 ERICH3Q5RHP9 1530 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 DEPDC5O75140 1603 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 LAMC1P11047 1609 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 LRRIQ1Q96JM4 1722 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 NRXN2Q9P2S2 1712 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 RGPD3A6NKT7 1758 aaPredicted RBP0.27□□□□□ -2.37
CPSF3-205ENST00000489629 RGPD4Q7Z3J3 1758 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 SPEF2Q9C093 1822 aa0.27□□□□□ -2.37
CPSF3-205ENST00000489629 DNAH8Q96JB1 4490 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 TRAV2A0A0B4J234 112 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 PIRTP0C851 137 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 COX4I1P13073 169 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 SPINK7P58062 85 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 SPINK13Q1W4C9 94 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 Q6ZUT4 128 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 TMEM14BQ9NUH8 114 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 CCDC88BA6NC98 1476 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 A2ML1A8K2U0 1454 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 ERVK-7P63135 1459 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 EFCAB5A4FU69 1503 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 ABCC3O15438 1527 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 NEXMIFQ5QGS0 1516 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 ARHGEF5Q12774 1597 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 DIP2CQ9Y2E4 1556 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 PTPN23Q9H3S7 1636 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 PRDM2Q13029 1718 aa0.26□□□□□ -2.37
CPSF3-205ENST00000489629 KNDC1Q76NI1 1749 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms