RNA–Protein interactions for RNA: ENST00000486427.1

LTN1-206, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 2

Gene LTN1, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-206ENST00000486427 SCN7AQ01118 1682 aa-0.25□□□□□ -2.45
LTN1-206ENST00000486427 MUC12Q9UKN1 5478 aa-0.25□□□□□ -2.45
LTN1-206ENST00000486427 GOLGA4Q13439 2230 aaKnown RBP-0.25□□□□□ -2.45
LTN1-206ENST00000486427 BSNQ9UPA5 3926 aa-0.25□□□□□ -2.45
LTN1-206ENST00000486427 DIP2CQ9Y2E4 1556 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 HMGXB3Q12766 1538 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 TULP4Q9NRJ4 1543 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 MYOM2P54296 1465 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 SHANK2Q9UPX8 1470 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 WDR7Q9Y4E6 1490 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 SMG6Q86US8 1419 aaKnown RBP-0.26□□□□□ -2.45
LTN1-206ENST00000486427 PRKDCP78527 4128 aaKnown RBP-0.26□□□□□ -2.45
LTN1-206ENST00000486427 KTN1Q86UP2 1357 aaKnown RBP-0.26□□□□□ -2.45
LTN1-206ENST00000486427 UBE2L5PA0A1B0GUS4 154 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 A0A1B0GV90 55 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 LOC285095A0A1B0GVY8 99 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 SNAPC5O75971 98 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 IGLC1P0CG04 106 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 SPRR1BP22528 89 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 UBE2L3P68036 154 aaKnown RBP-0.26□□□□□ -2.45
LTN1-206ENST00000486427 RPL13AP3Q6NVV1 102 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 DEFB123Q8N688 67 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 MYOZ3Q8TDC0 251 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 SPRR4Q96PI1 79 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 NXT2Q9NPJ8 142 aaKnown RBP-0.26□□□□□ -2.45
LTN1-206ENST00000486427 SPTA1P02549 2419 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 WNK1Q9H4A3 2382 aa-0.26□□□□□ -2.45
LTN1-206ENST00000486427 KIAA0556O60303 1618 aa-0.27□□□□□ -2.45
LTN1-206ENST00000486427 DLEU1O43261 78 aa-0.27□□□□□ -2.45
LTN1-206ENST00000486427 MGPP08493 103 aa-0.27□□□□□ -2.45
LTN1-206ENST00000486427 COX6B1P14854 86 aa-0.27□□□□□ -2.45
LTN1-206ENST00000486427 C10orf113Q5VZT2 155 aa-0.27□□□□□ -2.45
LTN1-206ENST00000486427 FAM223AQ8IWN6 122 aa-0.27□□□□□ -2.45
LTN1-206ENST00000486427 TMEM263Q8WUH6 116 aaKnown RBP-0.27□□□□□ -2.45
LTN1-206ENST00000486427 ARL2-SNX15V9GYD0 113 aa-0.27□□□□□ -2.45
LTN1-206ENST00000486427 SETXQ7Z333 2677 aaKnown RBP-0.27□□□□□ -2.45
LTN1-206ENST00000486427 EHBP1L1Q8N3D4 1523 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 POLA1P09884 1462 aaPredicted RBP-0.28□□□□□ -2.45
LTN1-206ENST00000486427 GAPVD1Q14C86 1478 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 MAP1AP78559 2803 aaPredicted RBP-0.28□□□□□ -2.45
LTN1-206ENST00000486427 LINC00959A0A1B0GUT2 108 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 GNG11P61952 73 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 UBA52P62987 128 aaKnown RBP-0.28□□□□□ -2.45
LTN1-206ENST00000486427 SFTA2Q6UW10 78 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 UQCR10Q9UDW1 63 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 TOP2BQ02880 1626 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 ZFHX3Q15911 3703 aa-0.28□□□□□ -2.45
LTN1-206ENST00000486427 MAGI1Q96QZ7 1491 aaPredicted RBP-0.29□□□□□ -2.46
LTN1-206ENST00000486427 SCAPERQ9BY12 1400 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 PKHD1P08F94 4074 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 PDZD2O15018 2839 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 SRRM2Q9UQ35 2752 aaKnown RBP-0.29□□□□□ -2.46
LTN1-206ENST00000486427 FAM24AA6NFZ4 105 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 SPRR2BP35325 72 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 Q0VG73 95 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 LCN9Q8WX39 176 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 FAM167A-AS1Q96KT0 104 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 MANBALQ9NQG1 85 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 FAIMQ9NVQ4 179 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 CC2D2AQ9P2K1 1620 aa-0.29□□□□□ -2.46
LTN1-206ENST00000486427 EIF4G3O43432 1585 aaKnown RBP-0.29□□□□□ -2.46
LTN1-206ENST00000486427 EP300Q09472 2414 aaPredicted RBP-0.29□□□□□ -2.46
LTN1-206ENST00000486427 NUP188Q5SRE5 1749 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 APC2O95996 2303 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 URB1O60287 2271 aaKnown RBP-0.3□□□□□ -2.46
LTN1-206ENST00000486427 TRBV7-4A0A0J9YYF1 115 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 EFCAB10A6NFE3 127 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 KLK9Q2XQG4 91 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 FDCSPQ8NFU4 85 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 LINC01600Q96MT4 127 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 FXYD6Q9H0Q3 95 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 IER3IP1Q9Y5U9 82 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 FLNBO75369 2602 aaKnown RBP-0.3□□□□□ -2.46
LTN1-206ENST00000486427 CHD8Q9HCK8 2581 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 FMN2Q9NZ56 1722 aa-0.3□□□□□ -2.46
LTN1-206ENST00000486427 NRKQ7Z2Y5 1582 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 FAM223BA6NKX1 122 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 LOC730098B7Z3J9 87 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 F6UZH7 168 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 CORTO00230 105 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 ATP5EP56381 51 aaPredicted RBP-0.31□□□□□ -2.46
LTN1-206ENST00000486427 UBE2D3P61077 147 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 UBE2D2P62837 147 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 PPP3R1P63098 170 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 WHAMMP3Q1A5X7 153 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 SVBPQ8N300 66 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 CHD1O14646 1710 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 SPHKAPQ2M3C7 1700 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 XRN1Q8IZH2 1706 aaKnown RBP-0.31□□□□□ -2.46
LTN1-206ENST00000486427 ADGRL2O95490 1459 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 C1orf167Q5SNV9 1468 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 TOPAZ1Q8N9V7 1692 aa-0.31□□□□□ -2.46
LTN1-206ENST00000486427 ACANP16112 2415 aa-0.32□□□□□ -2.46
LTN1-206ENST00000486427 A0A0G2JMZ2 1700 aa-0.32□□□□□ -2.46
LTN1-206ENST00000486427 KMT2CQ8NEZ4 4911 aaKnown RBP-0.32□□□□□ -2.46
LTN1-206ENST00000486427 PDCD11Q14690 1871 aaKnown RBP-0.32□□□□□ -2.46
LTN1-206ENST00000486427 COL4A6Q14031 1691 aa-0.32□□□□□ -2.46
LTN1-206ENST00000486427 PZPP20742 1482 aa-0.32□□□□□ -2.46
LTN1-206ENST00000486427 MRC2Q9UBG0 1479 aa-0.32□□□□□ -2.46
LTN1-206ENST00000486427 LINC00587B1AMM8 73 aa-0.32□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms