RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 RPL23P62829 140 aaKnown RBP8.42□□□□□ -1.06
SQSTM1-208ENST00000485412 FAM104AQ969W3 186 aa8.42□□□□□ -1.06
SQSTM1-208ENST00000485412 ISOC2Q96AB3 205 aa8.42□□□□□ -1.06
SQSTM1-208ENST00000485412 BORCS7Q96B45 105 aa8.42□□□□□ -1.06
SQSTM1-208ENST00000485412 KRTAP9-2Q9BYQ4 174 aa8.42□□□□□ -1.06
SQSTM1-208ENST00000485412 A0A0U1RQV1 116 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 FAM168BA1KXE4 195 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 COLCA2A8K830 154 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 FCER1GP30273 86 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 SPAG11BQ08648 103 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 C1orf137Q5JT78 98 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 PRR26Q8N8Z3 221 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 CTDSP1Q9GZU7 261 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 RPS10P5Q9NQ39 176 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 SMCO4Q9NRQ5 59 aa8.41□□□□□ -1.06
SQSTM1-208ENST00000485412 VCYO14598 125 aa8.4□□□□□ -1.06
SQSTM1-208ENST00000485412 SUMO2P61956 95 aaKnown RBP8.4□□□□□ -1.06
SQSTM1-208ENST00000485412 C2orf48Q96LS8 159 aa8.4□□□□□ -1.06
SQSTM1-208ENST00000485412 CSDC2Q9Y534 153 aaKnown RBP8.4□□□□□ -1.06
SQSTM1-208ENST00000485412 V9GYV3 84 aa8.4□□□□□ -1.06
SQSTM1-208ENST00000485412 MT-ND4LP03901 98 aa8.39□□□□□ -1.07
SQSTM1-208ENST00000485412 RPL39P62891 51 aaKnown RBP8.39□□□□□ -1.07
SQSTM1-208ENST00000485412 C10orf25Q5T742 122 aa8.39□□□□□ -1.07
SQSTM1-208ENST00000485412 ANAPC16Q96DE5 110 aa8.39□□□□□ -1.07
SQSTM1-208ENST00000485412 OSTCQ9NRP0 149 aa8.39□□□□□ -1.07
SQSTM1-208ENST00000485412 ADIRFQ15847 76 aa8.38□□□□□ -1.07
SQSTM1-208ENST00000485412 MRPL51Q4U2R6 128 aaKnown RBP8.38□□□□□ -1.07
SQSTM1-208ENST00000485412 KRTAP7-1Q8IUC3 87 aa8.38□□□□□ -1.07
SQSTM1-208ENST00000485412 DIRC1Q969H9 104 aa8.38□□□□□ -1.07
SQSTM1-208ENST00000485412 PPP1R2P9O14990 202 aa8.37□□□□□ -1.07
SQSTM1-208ENST00000485412 IGLV7-43P04211 117 aa8.37□□□□□ -1.07
SQSTM1-208ENST00000485412 PRR4Q16378 134 aa8.37□□□□□ -1.07
SQSTM1-208ENST00000485412 ORAOV1Q8WV07 137 aa8.37□□□□□ -1.07
SQSTM1-208ENST00000485412 YPEL4Q96NS1 127 aa8.37□□□□□ -1.07
SQSTM1-208ENST00000485412 RIGQ13278 110 aa8.36□□□□□ -1.07
SQSTM1-208ENST00000485412 LINC00518Q8N0U6 118 aa8.36□□□□□ -1.07
SQSTM1-208ENST00000485412 IMMP2LQ96T52 175 aa8.36□□□□□ -1.07
SQSTM1-208ENST00000485412 KIR2DL4Q99706 377 aa8.36□□□□□ -1.07
SQSTM1-208ENST00000485412 IGHV3OR16-9A0A0B4J2B5 98 aa8.35□□□□□ -1.07
SQSTM1-208ENST00000485412 FAM104BQ5XKR9 115 aa8.35□□□□□ -1.07
SQSTM1-208ENST00000485412 UNQ6190/PRO20217Q6UXQ8 127 aa8.35□□□□□ -1.07
SQSTM1-208ENST00000485412 FAM19A5Q7Z5A7 132 aaPredicted RBP8.35□□□□□ -1.07
SQSTM1-208ENST00000485412 TIMM21Q9BVV7 248 aa8.35□□□□□ -1.07
SQSTM1-208ENST00000485412 C6orf48Q9UBA6 75 aa8.35□□□□□ -1.07
SQSTM1-208ENST00000485412 A0A087WZ39 114 aa8.34□□□□□ -1.07
SQSTM1-208ENST00000485412 KRTAP1-4P0C5Y4 121 aa8.34□□□□□ -1.07
SQSTM1-208ENST00000485412 RNF151Q2KHN1 245 aa8.34□□□□□ -1.07
SQSTM1-208ENST00000485412 OR10D4PQ8NGN7 298 aa8.34□□□□□ -1.07
SQSTM1-208ENST00000485412 MRPL35Q9NZE8 188 aaKnown RBP8.34□□□□□ -1.07
SQSTM1-208ENST00000485412 H0Y9J4 135 aa8.33□□□□□ -1.08
SQSTM1-208ENST00000485412 IGLV1-50A0A075B6I6 118 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 TRBV24-1A0A075B6N3 115 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 TNFRSF6BO95407 300 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 RAB5AP20339 215 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 RAB5BP61020 215 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 GAGE2EQ4V326 116 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 GAGE2DQ9UEU5 116 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 NAT8BQ9UHF3 227 aa8.32□□□□□ -1.08
SQSTM1-208ENST00000485412 NDUFA1O15239 70 aa8.31□□□□□ -1.08
SQSTM1-208ENST00000485412 TCAPO15273 167 aa8.31□□□□□ -1.08
SQSTM1-208ENST00000485412 PPP1R17O96001 155 aa8.31□□□□□ -1.08
SQSTM1-208ENST00000485412 NPYP01303 97 aa8.31□□□□□ -1.08
SQSTM1-208ENST00000485412 UBE2D1P51668 147 aa8.31□□□□□ -1.08
SQSTM1-208ENST00000485412 KIAA0087Q14695 138 aa8.31□□□□□ -1.08
SQSTM1-208ENST00000485412 SMIM2Q9BVW6 85 aa8.31□□□□□ -1.08
SQSTM1-208ENST00000485412 TRAV9-1A0A075B6T8 112 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 SMIM27A0A1W2PRY6 76 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 IFITM10A6NMD0 228 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 D6R8Y8 96 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 TLX1NBP0CAT3 122 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 S100PP25815 95 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 CKS2P33552 79 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 SMAGPQ0VAQ4 97 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 C20orf78Q9BR46 151 aa8.3□□□□□ -1.08
SQSTM1-208ENST00000485412 C5orf52A6NGY3 159 aa8.29□□□□□ -1.08
SQSTM1-208ENST00000485412 AKR1D1P51857 326 aa8.29□□□□□ -1.08
SQSTM1-208ENST00000485412 RPL32P62910 135 aaKnown RBP8.29□□□□□ -1.08
SQSTM1-208ENST00000485412 MRPL54Q6P161 138 aaKnown RBP8.29□□□□□ -1.08
SQSTM1-208ENST00000485412 C2orf82Q6UX34 121 aa8.29□□□□□ -1.08
SQSTM1-208ENST00000485412 TMEM18Q96B42 140 aa8.29□□□□□ -1.08
SQSTM1-208ENST00000485412 SPANXA1Q9NS26 97 aa8.29□□□□□ -1.08
SQSTM1-208ENST00000485412 M0QXV9 152 aa8.28□□□□□ -1.08
SQSTM1-208ENST00000485412 HBBP68871 147 aa8.28□□□□□ -1.08
SQSTM1-208ENST00000485412 MRPS36P82909 103 aaKnown RBP8.28□□□□□ -1.08
SQSTM1-208ENST00000485412 C9orf129Q5T035 196 aaKnown RBP8.28□□□□□ -1.08
SQSTM1-208ENST00000485412 KRTAP9-6A0A140TA67 174 aa8.27□□□□□ -1.09
SQSTM1-208ENST00000485412 RPL13AP40429 203 aaKnown RBP8.27□□□□□ -1.09
SQSTM1-208ENST00000485412 SNRPEP62304 92 aaKnown RBP8.27□□□□□ -1.09
SQSTM1-208ENST00000485412 ZC2HC1BQ5TFG8 222 aa8.27□□□□□ -1.09
SQSTM1-208ENST00000485412 TGIF2-C20orf24A0A0A6YYL0 155 aa8.26□□□□□ -1.09
SQSTM1-208ENST00000485412 A0A1B0GXF2 115 aa8.26□□□□□ -1.09
SQSTM1-208ENST00000485412 LINC00242Q5T6M2 205 aa8.26□□□□□ -1.09
SQSTM1-208ENST00000485412 C12orf57Q99622 126 aa8.26□□□□□ -1.09
SQSTM1-208ENST00000485412 FAT4Q6V0I7 4981 aa8.26□□□□□ -1.09
SQSTM1-208ENST00000485412 IGLV4-3A0A075B6K6 122 aa8.25□□□□□ -1.09
SQSTM1-208ENST00000485412 F8WDY8 70 aa8.25□□□□□ -1.09
SQSTM1-208ENST00000485412 UBE2BP63146 152 aa8.25□□□□□ -1.09
SQSTM1-208ENST00000485412 S100A8P05109 93 aa8.23□□□□□ -1.09
SQSTM1-208ENST00000485412 S100A6P06703 90 aa8.23□□□□□ -1.09
SQSTM1-208ENST00000485412 SMIM6P0DI80 62 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms