RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TOMM6Q96B49 74 aa10.27□□□□□ -0.77
UPF3A-208ENST00000484246 AMELXQ99217 191 aa10.27□□□□□ -0.77
UPF3A-208ENST00000484246 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.26□□□□□ -0.77
UPF3A-208ENST00000484246 IGHV3OR16-9A0A0B4J2B5 98 aa10.26□□□□□ -0.77
UPF3A-208ENST00000484246 GHRHP01286 108 aa10.26□□□□□ -0.77
UPF3A-208ENST00000484246 LINC01620Q4KN68 170 aa10.26□□□□□ -0.77
UPF3A-208ENST00000484246 Q6ZN92 141 aa10.26□□□□□ -0.77
UPF3A-208ENST00000484246 CBLN2Q8IUK8 224 aa10.26□□□□□ -0.77
UPF3A-208ENST00000484246 Q8N1X5 172 aa10.26□□□□□ -0.77
UPF3A-208ENST00000484246 PAPPA-AS1Q5QFB9 102 aa10.25□□□□□ -0.77
UPF3A-208ENST00000484246 TEX43Q6ZNM6 134 aa10.25□□□□□ -0.77
UPF3A-208ENST00000484246 LINC00173Q6ZV60 143 aa10.25□□□□□ -0.77
UPF3A-208ENST00000484246 C18orf32Q8TCD1 76 aa10.25□□□□□ -0.77
UPF3A-208ENST00000484246 FAM229AH3BQW9 127 aa10.24□□□□□ -0.77
UPF3A-208ENST00000484246 UBE2D1P51668 147 aa10.24□□□□□ -0.77
UPF3A-208ENST00000484246 HIGD2BQ4VC39 106 aa10.24□□□□□ -0.77
UPF3A-208ENST00000484246 FA2HQ7L5A8 372 aa10.24□□□□□ -0.77
UPF3A-208ENST00000484246 ERASQ7Z444 233 aa10.24□□□□□ -0.77
UPF3A-208ENST00000484246 C2orf88Q9BSF0 95 aa10.24□□□□□ -0.77
UPF3A-208ENST00000484246 KRTAP4-5Q9BYR2 181 aa10.24□□□□□ -0.77
UPF3A-208ENST00000484246 LINC00242Q5T6M2 205 aa10.23□□□□□ -0.77
UPF3A-208ENST00000484246 SDIM1Q6ZPB5 146 aa10.23□□□□□ -0.77
UPF3A-208ENST00000484246 FAM19A3Q7Z5A8 133 aa10.23□□□□□ -0.77
UPF3A-208ENST00000484246 IGHV3-64A0A075B6Q5 118 aa10.22□□□□□ -0.77
UPF3A-208ENST00000484246 APOMO95445 188 aa10.22□□□□□ -0.77
UPF3A-208ENST00000484246 MALP21145 153 aa10.22□□□□□ -0.77
UPF3A-208ENST00000484246 URB1-AS1Q96HZ7 61 aa10.22□□□□□ -0.77
UPF3A-208ENST00000484246 CHAC1Q9BUX1 264 aa10.22□□□□□ -0.77
UPF3A-208ENST00000484246 VCX2Q9H322 139 aa10.22□□□□□ -0.77
UPF3A-208ENST00000484246 CIRBPQ14011 172 aaKnown RBP10.21□□□□□ -0.77
UPF3A-208ENST00000484246 SCXQ7RTU7 201 aa10.21□□□□□ -0.77
UPF3A-208ENST00000484246 C5orf38Q86SI9 138 aa10.21□□□□□ -0.77
UPF3A-208ENST00000484246 LINC01561Q8N1V8 128 aa10.21□□□□□ -0.77
UPF3A-208ENST00000484246 OR10D4PQ8NGN7 298 aa10.21□□□□□ -0.77
UPF3A-208ENST00000484246 A0A087WZ39 114 aa10.2□□□□□ -0.78
UPF3A-208ENST00000484246 SCGB3A1Q96QR1 104 aa10.2□□□□□ -0.78
UPF3A-208ENST00000484246 A0A096LNJ9 63 aa10.19□□□□□ -0.78
UPF3A-208ENST00000484246 F8WDY8 70 aa10.19□□□□□ -0.78
UPF3A-208ENST00000484246 ZNF561-AS1K7EIQ3 104 aa10.19□□□□□ -0.78
UPF3A-208ENST00000484246 LINC00614P0C842 121 aa10.19□□□□□ -0.78
UPF3A-208ENST00000484246 RAB5BP61020 215 aa10.19□□□□□ -0.78
UPF3A-208ENST00000484246 C2orf48Q96LS8 159 aa10.19□□□□□ -0.78
UPF3A-208ENST00000484246 PKIGQ9Y2B9 76 aa10.19□□□□□ -0.78
UPF3A-208ENST00000484246 SEC11AP67812 179 aa10.18□□□□□ -0.78
UPF3A-208ENST00000484246 HAMPP81172 84 aa10.18□□□□□ -0.78
UPF3A-208ENST00000484246 ZC2HC1BQ5TFG8 222 aa10.18□□□□□ -0.78
UPF3A-208ENST00000484246 CARD19Q96LW7 228 aa10.18□□□□□ -0.78
UPF3A-208ENST00000484246 IGLV4-69A0A075B6H9 119 aa10.17□□□□□ -0.78
UPF3A-208ENST00000484246 COX6A2Q02221 97 aa10.17□□□□□ -0.78
UPF3A-208ENST00000484246 SPAG11BQ08648 103 aa10.17□□□□□ -0.78
UPF3A-208ENST00000484246 SYCNQ0VAF6 134 aa10.17□□□□□ -0.78
UPF3A-208ENST00000484246 CIRBP-AS1Q8TBR5 109 aa10.17□□□□□ -0.78
UPF3A-208ENST00000484246 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.17□□□□□ -0.78
UPF3A-208ENST00000484246 FAT1Q14517 4588 aa10.17□□□□□ -0.78
UPF3A-208ENST00000484246 HBDP02042 147 aa10.16□□□□□ -0.78
UPF3A-208ENST00000484246 HERVK_113P63121 156 aa10.16□□□□□ -0.78
UPF3A-208ENST00000484246 LINC00526Q96FQ7 95 aa10.16□□□□□ -0.78
UPF3A-208ENST00000484246 HERC1Q15751 4861 aa10.15□□□□□ -0.78
UPF3A-208ENST00000484246 COLCA2A8K830 154 aa10.15□□□□□ -0.78
UPF3A-208ENST00000484246 EPM2AB3EWF7 344 aa10.15□□□□□ -0.78
UPF3A-208ENST00000484246 PDZD11Q5EBL8 140 aa10.15□□□□□ -0.78
UPF3A-208ENST00000484246 SPACA4Q8TDM5 124 aa10.15□□□□□ -0.78
UPF3A-208ENST00000484246 ORAOV1Q8WV07 137 aa10.15□□□□□ -0.78
UPF3A-208ENST00000484246 CHCHD1Q96BP2 118 aaKnown RBP10.15□□□□□ -0.78
UPF3A-208ENST00000484246 PANO1I0J062 215 aa10.14□□□□□ -0.79
UPF3A-208ENST00000484246 RNF151Q2KHN1 245 aa10.14□□□□□ -0.79
UPF3A-208ENST00000484246 Q5VSD8 79 aa10.14□□□□□ -0.79
UPF3A-208ENST00000484246 CST9LQ9H4G1 147 aa10.14□□□□□ -0.79
UPF3A-208ENST00000484246 IGLV5-45A0A087WSX0 123 aa10.13□□□□□ -0.79
UPF3A-208ENST00000484246 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.13□□□□□ -0.79
UPF3A-208ENST00000484246 TRGC2P03986 189 aa10.13□□□□□ -0.79
UPF3A-208ENST00000484246 KIAA0087Q14695 138 aa10.13□□□□□ -0.79
UPF3A-208ENST00000484246 PMVKQ15126 192 aa10.13□□□□□ -0.79
UPF3A-208ENST00000484246 Q6ZRU5 148 aa10.13□□□□□ -0.79
UPF3A-208ENST00000484246 CAMK2N2Q96S95 79 aa10.13□□□□□ -0.79
UPF3A-208ENST00000484246 MRPL35Q9NZE8 188 aaKnown RBP10.13□□□□□ -0.79
UPF3A-208ENST00000484246 TINCRA0A1B0GVN0 87 aa10.12□□□□□ -0.79
UPF3A-208ENST00000484246 ATP5LO75964 103 aa10.12□□□□□ -0.79
UPF3A-208ENST00000484246 SMR3BP02814 79 aaPredicted RBP10.12□□□□□ -0.79
UPF3A-208ENST00000484246 GEMIN7Q9H840 131 aaKnown RBP10.12□□□□□ -0.79
UPF3A-208ENST00000484246 A0A0J9YXV3 536 aa10.11□□□□□ -0.79
UPF3A-208ENST00000484246 LINC00474Q9P2X8 69 aa10.11□□□□□ -0.79
UPF3A-208ENST00000484246 CDKN2A-AS1Q9UH64 79 aa10.11□□□□□ -0.79
UPF3A-208ENST00000484246 NDUFA1O15239 70 aa10.1□□□□□ -0.79
UPF3A-208ENST00000484246 CHTF8P0CG12 524 aa10.1□□□□□ -0.79
UPF3A-208ENST00000484246 PLAC8Q9NZF1 115 aa10.1□□□□□ -0.79
UPF3A-208ENST00000484246 A0A096LNI7 61 aa10.09□□□□□ -0.79
UPF3A-208ENST00000484246 LOC107984640A0A0U1RRK4 108 aa10.09□□□□□ -0.79
UPF3A-208ENST00000484246 PMCHL1Q16048 86 aa10.09□□□□□ -0.79
UPF3A-208ENST00000484246 A0A087WYN8 130 aa10.08□□□□□ -0.8
UPF3A-208ENST00000484246 IGLC3P0DOY3 106 aa10.08□□□□□ -0.8
UPF3A-208ENST00000484246 Q8IZM0 81 aa10.08□□□□□ -0.8
UPF3A-208ENST00000484246 TLX1NBP0CAT3 122 aa10.07□□□□□ -0.8
UPF3A-208ENST00000484246 PTTG1IPP53801 180 aa10.07□□□□□ -0.8
UPF3A-208ENST00000484246 BAGE3Q86Y29 109 aa10.07□□□□□ -0.8
UPF3A-208ENST00000484246 LINC00469Q8N7U9 141 aa10.07□□□□□ -0.8
UPF3A-208ENST00000484246 PACRGQ96M98 296 aaPredicted RBP10.07□□□□□ -0.8
UPF3A-208ENST00000484246 TRBV30A0A0K0K1B3 111 aa10.06□□□□□ -0.8
UPF3A-208ENST00000484246 SMIM1B2RUZ4 78 aa10.06□□□□□ -0.8
UPF3A-208ENST00000484246 HSBP1O75506 76 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms