RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MT-ND6P03923 174 aa9.96□□□□□ -0.82
HMGA1-206ENST00000478214 COX6A2Q02221 97 aa9.96□□□□□ -0.82
HMGA1-206ENST00000478214 FABP9Q0Z7S8 132 aa9.96□□□□□ -0.82
HMGA1-206ENST00000478214 TMEM141Q96I45 108 aa9.96□□□□□ -0.82
HMGA1-206ENST00000478214 MRPL18Q9H0U6 180 aaKnown RBP9.96□□□□□ -0.82
HMGA1-206ENST00000478214 CIRBPQ14011 172 aaKnown RBP9.95□□□□□ -0.82
HMGA1-206ENST00000478214 ZC2HC1BQ5TFG8 222 aa9.95□□□□□ -0.82
HMGA1-206ENST00000478214 PRSS3P2Q8NHM4 247 aa9.95□□□□□ -0.82
HMGA1-206ENST00000478214 IGLV4-69A0A075B6H9 119 aa9.94□□□□□ -0.82
HMGA1-206ENST00000478214 IGHV3OR16-9A0A0B4J2B5 98 aa9.94□□□□□ -0.82
HMGA1-206ENST00000478214 CARD19Q96LW7 228 aa9.94□□□□□ -0.82
HMGA1-206ENST00000478214 IGIPA6NJ69 53 aa9.93□□□□□ -0.82
HMGA1-206ENST00000478214 APOMO95445 188 aa9.93□□□□□ -0.82
HMGA1-206ENST00000478214 SYCNQ0VAF6 134 aa9.93□□□□□ -0.82
HMGA1-206ENST00000478214 TEX43Q6ZNM6 134 aa9.93□□□□□ -0.82
HMGA1-206ENST00000478214 DPH3Q96FX2 82 aa9.93□□□□□ -0.82
HMGA1-206ENST00000478214 PLA2G1BP04054 148 aaKnown RBP9.92□□□□□ -0.82
HMGA1-206ENST00000478214 LINC00242Q5T6M2 205 aa9.92□□□□□ -0.82
HMGA1-206ENST00000478214 Q6ZN92 141 aa9.92□□□□□ -0.82
HMGA1-206ENST00000478214 LINC00173Q6ZV60 143 aa9.92□□□□□ -0.82
HMGA1-206ENST00000478214 SPACA4Q8TDM5 124 aa9.92□□□□□ -0.82
HMGA1-206ENST00000478214 AMELXQ99217 191 aa9.92□□□□□ -0.82
HMGA1-206ENST00000478214 A0A087WYN8 130 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 IGKV2-24A0A0C4DH68 120 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 G0S2P27469 103 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 UBE2D1P51668 147 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 SPAG11BQ08648 103 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 TOMM6Q96B49 74 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 VCX2Q9H322 139 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 TRAPPC1Q9Y5R8 145 aa9.91□□□□□ -0.82
HMGA1-206ENST00000478214 FLG2Q5D862 2391 aaPredicted RBP9.9□□□□□ -0.82
HMGA1-206ENST00000478214 MYCBP2O75592 4640 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 LINC01546A6NGU7 62 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 NPSP0C0P6 89 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 Q6ZRU5 148 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 ORAOV1Q8WV07 137 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 C2orf48Q96LS8 159 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 CAMK2N2Q96S95 79 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 C2orf88Q9BSF0 95 aa9.9□□□□□ -0.82
HMGA1-206ENST00000478214 A0A096LNI7 61 aa9.89□□□□□ -0.83
HMGA1-206ENST00000478214 KRTAP10-4P60372 401 aaPredicted RBP9.89□□□□□ -0.83
HMGA1-206ENST00000478214 MAJINQ3KP22 176 aa9.89□□□□□ -0.83
HMGA1-206ENST00000478214 FA2HQ7L5A8 372 aa9.89□□□□□ -0.83
HMGA1-206ENST00000478214 OR10D4PQ8NGN7 298 aa9.89□□□□□ -0.83
HMGA1-206ENST00000478214 TIMM17AQ99595 171 aa9.89□□□□□ -0.83
HMGA1-206ENST00000478214 A0A087WZ39 114 aa9.88□□□□□ -0.83
HMGA1-206ENST00000478214 SLC7A5P1Q8MH63 180 aa9.88□□□□□ -0.83
HMGA1-206ENST00000478214 YPEL4Q96NS1 127 aa9.88□□□□□ -0.83
HMGA1-206ENST00000478214 SCGB3A1Q96QR1 104 aa9.88□□□□□ -0.83
HMGA1-206ENST00000478214 PAPPA-AS1Q5QFB9 102 aa9.87□□□□□ -0.83
HMGA1-206ENST00000478214 ERASQ7Z444 233 aa9.87□□□□□ -0.83
HMGA1-206ENST00000478214 SMCO4Q9NRQ5 59 aa9.87□□□□□ -0.83
HMGA1-206ENST00000478214 PLAC8Q9NZF1 115 aa9.87□□□□□ -0.83
HMGA1-206ENST00000478214 C18orf32Q8TCD1 76 aa9.86□□□□□ -0.83
HMGA1-206ENST00000478214 PKIGQ9Y2B9 76 aa9.86□□□□□ -0.83
HMGA1-206ENST00000478214 A0A0J9YXV3 536 aa9.85□□□□□ -0.83
HMGA1-206ENST00000478214 LOC107984640A0A0U1RRK4 108 aa9.85□□□□□ -0.83
HMGA1-206ENST00000478214 RPL37AP61513 92 aaKnown RBP9.85□□□□□ -0.83
HMGA1-206ENST00000478214 FAM19A3Q7Z5A8 133 aa9.85□□□□□ -0.83
HMGA1-206ENST00000478214 CBLN2Q8IUK8 224 aa9.85□□□□□ -0.83
HMGA1-206ENST00000478214 STPG4Q8N801 248 aa9.85□□□□□ -0.83
HMGA1-206ENST00000478214 URB1-AS1Q96HZ7 61 aa9.85□□□□□ -0.83
HMGA1-206ENST00000478214 PKHD1L1Q86WI1 4243 aa9.84□□□□□ -0.83
HMGA1-206ENST00000478214 GAGE2BQ13066 116 aa9.84□□□□□ -0.83
HMGA1-206ENST00000478214 KIAA0087Q14695 138 aa9.84□□□□□ -0.83
HMGA1-206ENST00000478214 C10orf25Q5T742 122 aa9.84□□□□□ -0.83
HMGA1-206ENST00000478214 LINC01549A6NIU2 74 aa9.83□□□□□ -0.84
HMGA1-206ENST00000478214 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.83□□□□□ -0.84
HMGA1-206ENST00000478214 NDUFA1O15239 70 aa9.83□□□□□ -0.84
HMGA1-206ENST00000478214 PTTG1IPP53801 180 aa9.83□□□□□ -0.84
HMGA1-206ENST00000478214 UNQ6190/PRO20217Q6UXQ8 127 aa9.83□□□□□ -0.84
HMGA1-206ENST00000478214 LINC01561Q8N1V8 128 aa9.83□□□□□ -0.84
HMGA1-206ENST00000478214 MRPL35Q9NZE8 188 aaKnown RBP9.83□□□□□ -0.84
HMGA1-206ENST00000478214 LINC00474Q9P2X8 69 aa9.83□□□□□ -0.84
HMGA1-206ENST00000478214 F8WDY8 70 aa9.82□□□□□ -0.84
HMGA1-206ENST00000478214 LINC00614P0C842 121 aa9.82□□□□□ -0.84
HMGA1-206ENST00000478214 RNF151Q2KHN1 245 aa9.82□□□□□ -0.84
HMGA1-206ENST00000478214 A0A096LNJ9 63 aa9.81□□□□□ -0.84
HMGA1-206ENST00000478214 HERVK_113P63121 156 aa9.81□□□□□ -0.84
HMGA1-206ENST00000478214 SEC11AP67812 179 aa9.81□□□□□ -0.84
HMGA1-206ENST00000478214 RPL18AQ02543 176 aaKnown RBP9.81□□□□□ -0.84
HMGA1-206ENST00000478214 GEMIN7Q9H840 131 aaKnown RBP9.81□□□□□ -0.84
HMGA1-206ENST00000478214 CDKN2A-AS1Q9UH64 79 aa9.81□□□□□ -0.84
HMGA1-206ENST00000478214 CST9LQ9H4G1 147 aa9.8□□□□□ -0.84
HMGA1-206ENST00000478214 C6orf48Q9UBA6 75 aa9.8□□□□□ -0.84
HMGA1-206ENST00000478214 HNRNPA3P51991 378 aaKnown RBP9.79□□□□□ -0.84
HMGA1-206ENST00000478214 PMCHL1Q16048 86 aa9.79□□□□□ -0.84
HMGA1-206ENST00000478214 C2orf82Q6UX34 121 aa9.79□□□□□ -0.84
HMGA1-206ENST00000478214 TOMM7Q9P0U1 55 aa9.79□□□□□ -0.84
HMGA1-206ENST00000478214 DMBT1Q9UGM3 2413 aaPredicted RBP9.78□□□□□ -0.84
HMGA1-206ENST00000478214 TINCRA0A1B0GVN0 87 aa9.78□□□□□ -0.84
HMGA1-206ENST00000478214 RAB5BP61020 215 aa9.78□□□□□ -0.84
HMGA1-206ENST00000478214 PMVKQ15126 192 aa9.78□□□□□ -0.84
HMGA1-206ENST00000478214 LINC00469Q8N7U9 141 aa9.78□□□□□ -0.84
HMGA1-206ENST00000478214 C7orf33Q8WU49 177 aa9.78□□□□□ -0.84
HMGA1-206ENST00000478214 A0A1W2PNN7 141 aa9.77□□□□□ -0.85
HMGA1-206ENST00000478214 HBDP02042 147 aa9.77□□□□□ -0.85
HMGA1-206ENST00000478214 PACRGQ96M98 296 aaPredicted RBP9.77□□□□□ -0.85
HMGA1-206ENST00000478214 PRSS2P07478 247 aa9.76□□□□□ -0.85
HMGA1-206ENST00000478214 PDZD11Q5EBL8 140 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms