RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 MAP1LC3AQ9H492 121 aa13.72□□□□□ -0.21
COL9A3-211ENST00000477612 LINC00474Q9P2X8 69 aa13.72□□□□□ -0.21
COL9A3-211ENST00000477612 IGKV2-24A0A0C4DH68 120 aa13.71□□□□□ -0.21
COL9A3-211ENST00000477612 APOMO95445 188 aa13.71□□□□□ -0.21
COL9A3-211ENST00000477612 C5orf38Q86SI9 138 aa13.71□□□□□ -0.21
COL9A3-211ENST00000477612 Q8N8P6 123 aa13.71□□□□□ -0.21
COL9A3-211ENST00000477612 IFI27P40305 119 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-211ENST00000477612 SEC11CQ9BY50 192 aa13.7□□□□□ -0.22
COL9A3-211ENST00000477612 LOC389332A0A1B0GUA5 103 aa13.69□□□□□ -0.22
COL9A3-211ENST00000477612 K7EMI3 77 aa13.69□□□□□ -0.22
COL9A3-211ENST00000477612 Q6ZRU5 148 aa13.69□□□□□ -0.22
COL9A3-211ENST00000477612 STPG4Q8N801 248 aa13.69□□□□□ -0.22
COL9A3-211ENST00000477612 TRAV9-1A0A075B6T8 112 aa13.68□□□□□ -0.22
COL9A3-211ENST00000477612 OR10D4PQ8NGN7 298 aa13.68□□□□□ -0.22
COL9A3-211ENST00000477612 IGLV4-3A0A075B6K6 122 aa13.67□□□□□ -0.22
COL9A3-211ENST00000477612 IFITM10A6NMD0 228 aa13.67□□□□□ -0.22
COL9A3-211ENST00000477612 C7orf33Q8WU49 177 aa13.66□□□□□ -0.22
COL9A3-211ENST00000477612 CAMK2N2Q96S95 79 aa13.66□□□□□ -0.22
COL9A3-211ENST00000477612 LOC107984640A0A0U1RRK4 108 aa13.65□□□□□ -0.22
COL9A3-211ENST00000477612 F8WDY8 70 aa13.65□□□□□ -0.22
COL9A3-211ENST00000477612 RNF151Q2KHN1 245 aa13.65□□□□□ -0.22
COL9A3-211ENST00000477612 ORMDL2Q53FV1 153 aa13.65□□□□□ -0.22
COL9A3-211ENST00000477612 TMEM141Q96I45 108 aa13.65□□□□□ -0.22
COL9A3-211ENST00000477612 NPSP0C0P6 89 aa13.64□□□□□ -0.23
COL9A3-211ENST00000477612 PTTG1IPP53801 180 aa13.64□□□□□ -0.23
COL9A3-211ENST00000477612 SPAG11BQ08648 103 aa13.64□□□□□ -0.23
COL9A3-211ENST00000477612 C2orf66Q6UXQ4 117 aa13.64□□□□□ -0.23
COL9A3-211ENST00000477612 NXT2Q9NPJ8 142 aaKnown RBP13.64□□□□□ -0.23
COL9A3-211ENST00000477612 CYSLTR1Q9Y271 337 aa13.64□□□□□ -0.23
COL9A3-211ENST00000477612 C10orf91Q5T1B1 145 aa13.63□□□□□ -0.23
COL9A3-211ENST00000477612 LINC00242Q5T6M2 205 aa13.63□□□□□ -0.23
COL9A3-211ENST00000477612 ORAOV1Q8WV07 137 aa13.62□□□□□ -0.23
COL9A3-211ENST00000477612 AMELXQ99217 191 aa13.62□□□□□ -0.23
COL9A3-211ENST00000477612 MRPL35Q9NZE8 188 aaKnown RBP13.62□□□□□ -0.23
COL9A3-211ENST00000477612 A0A087WZ39 114 aa13.61□□□□□ -0.23
COL9A3-211ENST00000477612 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-211ENST00000477612 TEX43Q6ZNM6 134 aa13.61□□□□□ -0.23
COL9A3-211ENST00000477612 COMMD7Q86VX2 200 aa13.61□□□□□ -0.23
COL9A3-211ENST00000477612 TGIF2-C20orf24A0A0A6YYL0 155 aa13.6□□□□□ -0.23
COL9A3-211ENST00000477612 IGIPA6NJ69 53 aa13.6□□□□□ -0.23
COL9A3-211ENST00000477612 UBE2D1P51668 147 aa13.6□□□□□ -0.23
COL9A3-211ENST00000477612 G0S2P27469 103 aa13.59□□□□□ -0.23
COL9A3-211ENST00000477612 GAGE2BQ13066 116 aa13.59□□□□□ -0.23
COL9A3-211ENST00000477612 LINC00173Q6ZV60 143 aa13.59□□□□□ -0.23
COL9A3-211ENST00000477612 LINC01561Q8N1V8 128 aa13.59□□□□□ -0.23
COL9A3-211ENST00000477612 GNB1LQ9BYB4 327 aa13.59□□□□□ -0.23
COL9A3-211ENST00000477612 KIAA0087Q14695 138 aa13.58□□□□□ -0.24
COL9A3-211ENST00000477612 KIAA1644Q3SXP7 199 aa13.58□□□□□ -0.24
COL9A3-211ENST00000477612 FAM19A3Q7Z5A8 133 aa13.58□□□□□ -0.24
COL9A3-211ENST00000477612 S100PP25815 95 aa13.57□□□□□ -0.24
COL9A3-211ENST00000477612 PRR3P79522 188 aaKnown RBP13.57□□□□□ -0.24
COL9A3-211ENST00000477612 Q6ZN92 141 aa13.57□□□□□ -0.24
COL9A3-211ENST00000477612 C2orf88Q9BSF0 95 aa13.57□□□□□ -0.24
COL9A3-211ENST00000477612 CARHSP1Q9Y2V2 147 aaKnown RBP13.57□□□□□ -0.24
COL9A3-211ENST00000477612 NDUFA1O15239 70 aa13.56□□□□□ -0.24
COL9A3-211ENST00000477612 TLX1NBP0CAT3 122 aa13.56□□□□□ -0.24
COL9A3-211ENST00000477612 COX19Q49B96 90 aa13.56□□□□□ -0.24
COL9A3-211ENST00000477612 VCX2Q9H322 139 aa13.56□□□□□ -0.24
COL9A3-211ENST00000477612 A0A1W2PNN7 141 aa13.55□□□□□ -0.24
COL9A3-211ENST00000477612 A0A0J9YXV3 536 aa13.54□□□□□ -0.24
COL9A3-211ENST00000477612 LINC01546A6NGU7 62 aa13.54□□□□□ -0.24
COL9A3-211ENST00000477612 RHEBQ15382 184 aa13.54□□□□□ -0.24
COL9A3-211ENST00000477612 C10orf25Q5T742 122 aa13.54□□□□□ -0.24
COL9A3-211ENST00000477612 ZC2HC1BQ5TFG8 222 aa13.54□□□□□ -0.24
COL9A3-211ENST00000477612 TOMM6Q96B49 74 aa13.54□□□□□ -0.24
COL9A3-211ENST00000477612 TIMM17AQ99595 171 aa13.54□□□□□ -0.24
COL9A3-211ENST00000477612 PAPPA-AS1Q5QFB9 102 aa13.53□□□□□ -0.24
COL9A3-211ENST00000477612 UNQ6190/PRO20217Q6UXQ8 127 aa13.53□□□□□ -0.24
COL9A3-211ENST00000477612 ALKBH7Q9BT30 221 aaPredicted RBP13.53□□□□□ -0.24
COL9A3-211ENST00000477612 RPL18AQ02543 176 aaKnown RBP13.52□□□□□ -0.25
COL9A3-211ENST00000477612 C6orf48Q9UBA6 75 aa13.52□□□□□ -0.25
COL9A3-211ENST00000477612 MT-ND6P03923 174 aa13.51□□□□□ -0.25
COL9A3-211ENST00000477612 MT1HL1P0DM35 61 aa13.51□□□□□ -0.25
COL9A3-211ENST00000477612 C9orf116Q5BN46 136 aaPredicted RBP13.51□□□□□ -0.25
COL9A3-211ENST00000477612 SERTAD4-AS1Q5TG53 156 aa13.51□□□□□ -0.25
COL9A3-211ENST00000477612 LINC01549A6NIU2 74 aa13.5□□□□□ -0.25
COL9A3-211ENST00000477612 Q6ZRP5 223 aa13.5□□□□□ -0.25
COL9A3-211ENST00000477612 ERASQ7Z444 233 aa13.5□□□□□ -0.25
COL9A3-211ENST00000477612 TRBV30A0A0K0K1B3 111 aa13.49□□□□□ -0.25
COL9A3-211ENST00000477612 SEC11AP67812 179 aa13.49□□□□□ -0.25
COL9A3-211ENST00000477612 RPS10P5Q9NQ39 176 aa13.49□□□□□ -0.25
COL9A3-211ENST00000477612 HERVK_113P63121 156 aa13.47□□□□□ -0.25
COL9A3-211ENST00000477612 SRSF9Q13242 221 aaKnown RBP eCLIP13.47□□□□□ -0.252e-8■■□□□ 12.3
COL9A3-211ENST00000477612 MRPL18Q9H0U6 180 aaKnown RBP13.47□□□□□ -0.25
COL9A3-211ENST00000477612 SPINK6Q6UWN8 80 aa13.46□□□□□ -0.25
COL9A3-211ENST00000477612 TNXBP22105 4242 aa13.45□□□□□ -0.26
COL9A3-211ENST00000477612 FABP9Q0Z7S8 132 aa13.45□□□□□ -0.26
COL9A3-211ENST00000477612 C2orf82Q6UX34 121 aa13.45□□□□□ -0.26
COL9A3-211ENST00000477612 SCGB3A1Q96QR1 104 aa13.45□□□□□ -0.26
COL9A3-211ENST00000477612 HMCN2Q8NDA2 5059 aa13.44□□□□□ -0.26
COL9A3-211ENST00000477612 Q8IZM0 81 aa13.44□□□□□ -0.26
COL9A3-211ENST00000477612 CDKN2A-AS1Q9UH64 79 aa13.44□□□□□ -0.26
COL9A3-211ENST00000477612 NDUFC2-KCTD14E9PQ53 114 aa13.42□□□□□ -0.26
COL9A3-211ENST00000477612 PHF5AQ7RTV0 110 aaKnown RBP13.42□□□□□ -0.26
COL9A3-211ENST00000477612 PACRGQ96M98 296 aaPredicted RBP13.42□□□□□ -0.26
COL9A3-211ENST00000477612 LINC01600Q96MT4 127 aa13.42□□□□□ -0.26
COL9A3-211ENST00000477612 PRSS2P07478 247 aa13.41□□□□□ -0.26
COL9A3-211ENST00000477612 GEMIN7Q9H840 131 aaKnown RBP13.41□□□□□ -0.26
COL9A3-211ENST00000477612 PSORS1C2Q9UIG4 136 aa13.41□□□□□ -0.26
COL9A3-211ENST00000477612 FA2HQ7L5A8 372 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms