RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 IFI27P40305 119 aaPredicted RBP11.31□□□□□ -0.6
UPF3A-203ENST00000474056 Q6ZRU5 148 aa11.31□□□□□ -0.6
UPF3A-203ENST00000474056 STPG4Q8N801 248 aa11.31□□□□□ -0.6
UPF3A-203ENST00000474056 IFITM10A6NMD0 228 aa11.3□□□□□ -0.6
UPF3A-203ENST00000474056 IMMP2LQ96T52 175 aa11.3□□□□□ -0.6
UPF3A-203ENST00000474056 IGLV4-3A0A075B6K6 122 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 IGHV3OR16-9A0A0B4J2B5 98 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 APOMO95445 188 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 Q8N8P6 123 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 CAMK2N2Q96S95 79 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 PKIGQ9Y2B9 76 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 PYGO1Q9Y3Y4 419 aa11.29□□□□□ -0.6
UPF3A-203ENST00000474056 SPAG11BQ08648 103 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 COMMD7Q86VX2 200 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 C2orf48Q96LS8 159 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 SEC11CQ9BY50 192 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 CTDSP1Q9GZU7 261 aa11.28□□□□□ -0.6
UPF3A-203ENST00000474056 OXTP01178 125 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 C2orf66Q6UXQ4 117 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 C7orf33Q8WU49 177 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 LINC00474Q9P2X8 69 aa11.27□□□□□ -0.61
UPF3A-203ENST00000474056 KIAA1644Q3SXP7 199 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 OR10D4PQ8NGN7 298 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 ORAOV1Q8WV07 137 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 TMEM141Q96I45 108 aa11.26□□□□□ -0.61
UPF3A-203ENST00000474056 LOC107984640A0A0U1RRK4 108 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 PTTG1IPP53801 180 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 GAGE2BQ13066 116 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
UPF3A-203ENST00000474056 TRAV9-1A0A075B6T8 112 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.24□□□□□ -0.61
UPF3A-203ENST00000474056 ORMDL2Q53FV1 153 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 LINC00242Q5T6M2 205 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 ZC2HC1BQ5TFG8 222 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 TEX43Q6ZNM6 134 aa11.24□□□□□ -0.61
UPF3A-203ENST00000474056 TGIF2-C20orf24A0A0A6YYL0 155 aa11.23□□□□□ -0.61
UPF3A-203ENST00000474056 NXT2Q9NPJ8 142 aaKnown RBP11.23□□□□□ -0.61
UPF3A-203ENST00000474056 A0A0J9YXV3 536 aa11.22□□□□□ -0.61
UPF3A-203ENST00000474056 UBE2D1P51668 147 aa11.22□□□□□ -0.61
UPF3A-203ENST00000474056 LINC00173Q6ZV60 143 aa11.22□□□□□ -0.61
UPF3A-203ENST00000474056 K7EMI3 77 aa11.21□□□□□ -0.61
UPF3A-203ENST00000474056 RPL18AQ02543 176 aaKnown RBP11.21□□□□□ -0.61
UPF3A-203ENST00000474056 C10orf91Q5T1B1 145 aa11.21□□□□□ -0.61
UPF3A-203ENST00000474056 AMELXQ99217 191 aa11.21□□□□□ -0.61
UPF3A-203ENST00000474056 A0A087WZ39 114 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 S100PP25815 95 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 PRR3P79522 188 aaKnown RBP11.2□□□□□ -0.62
UPF3A-203ENST00000474056 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 C10orf25Q5T742 122 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 C2orf88Q9BSF0 95 aa11.2□□□□□ -0.62
UPF3A-203ENST00000474056 MRPL35Q9NZE8 188 aaKnown RBP11.2□□□□□ -0.62
UPF3A-203ENST00000474056 A0A1W2PNN7 141 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 IGIPA6NJ69 53 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 NDUFA1O15239 70 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 Q6ZN92 141 aa11.19□□□□□ -0.62
UPF3A-203ENST00000474056 F8WDY8 70 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 KIAA0087Q14695 138 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 UNQ6190/PRO20217Q6UXQ8 127 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 GNB1LQ9BYB4 327 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 VCX2Q9H322 139 aa11.18□□□□□ -0.62
UPF3A-203ENST00000474056 CARHSP1Q9Y2V2 147 aaKnown RBP11.18□□□□□ -0.62
UPF3A-203ENST00000474056 NPSP0C0P6 89 aa11.17□□□□□ -0.62
UPF3A-203ENST00000474056 TOMM6Q96B49 74 aa11.17□□□□□ -0.62
UPF3A-203ENST00000474056 C6orf48Q9UBA6 75 aa11.17□□□□□ -0.62
UPF3A-203ENST00000474056 RHEBQ15382 184 aa11.16□□□□□ -0.62
UPF3A-203ENST00000474056 C9orf116Q5BN46 136 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-203ENST00000474056 RPS10P5Q9NQ39 176 aa11.16□□□□□ -0.62
UPF3A-203ENST00000474056 FAM19A3Q7Z5A8 133 aa11.15□□□□□ -0.62
UPF3A-203ENST00000474056 TIMM17AQ99595 171 aa11.15□□□□□ -0.62
UPF3A-203ENST00000474056 ALKBH7Q9BT30 221 aaPredicted RBP11.15□□□□□ -0.62
UPF3A-203ENST00000474056 COX19Q49B96 90 aa11.14□□□□□ -0.63
UPF3A-203ENST00000474056 LINC01561Q8N1V8 128 aa11.14□□□□□ -0.63
UPF3A-203ENST00000474056 HMCN2Q8NDA2 5059 aa11.14□□□□□ -0.63
UPF3A-203ENST00000474056 TLX1NBP0CAT3 122 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 MT1HL1P0DM35 61 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 G0S2P27469 103 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 C2orf82Q6UX34 121 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 Q6ZRP5 223 aa11.13□□□□□ -0.63
UPF3A-203ENST00000474056 MRPL18Q9H0U6 180 aaKnown RBP11.13□□□□□ -0.63
UPF3A-203ENST00000474056 LINC01546A6NGU7 62 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 MT-ND6P03923 174 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 FABP9Q0Z7S8 132 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 PAPPA-AS1Q5QFB9 102 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 TNXBP22105 4242 aa11.12□□□□□ -0.63
UPF3A-203ENST00000474056 PHF5AQ7RTV0 110 aaKnown RBP11.11□□□□□ -0.63
UPF3A-203ENST00000474056 ERASQ7Z444 233 aa11.11□□□□□ -0.63
UPF3A-203ENST00000474056 TRBV30A0A0K0K1B3 111 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 HERVK_113P63121 156 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 GAGE2EQ4V326 116 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 SCGB3A1Q96QR1 104 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 GAGE2DQ9UEU5 116 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 CDKN2A-AS1Q9UH64 79 aa11.1□□□□□ -0.63
UPF3A-203ENST00000474056 FAM168BA1KXE4 195 aa11.09□□□□□ -0.63
UPF3A-203ENST00000474056 SEC11AP67812 179 aa11.09□□□□□ -0.63
UPF3A-203ENST00000474056 TOMM7Q9P0U1 55 aa11.09□□□□□ -0.63
UPF3A-203ENST00000474056 APOC3P02656 99 aa11.08□□□□□ -0.64
UPF3A-203ENST00000474056 SERTAD4-AS1Q5TG53 156 aa11.08□□□□□ -0.64
UPF3A-203ENST00000474056 PACRGQ96M98 296 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-203ENST00000474056 PRSS2P07478 247 aa11.07□□□□□ -0.64
UPF3A-203ENST00000474056 FA2HQ7L5A8 372 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms