RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CLPSL2Q6UWE3 100 aa8.18□□□□□ -1.1
PTPRF-208ENST00000437607 PET117Q6UWS5 81 aa8.18□□□□□ -1.1
PTPRF-208ENST00000437607 Q8N3U1 123 aa8.18□□□□□ -1.1
PTPRF-208ENST00000437607 CDC42SE2Q9NRR3 84 aa8.18□□□□□ -1.1
PTPRF-208ENST00000437607 IGKV3OR2-268A0A0C4DH90 116 aa8.17□□□□□ -1.1
PTPRF-208ENST00000437607 C10orf126Q8N4M7 172 aa8.17□□□□□ -1.1
PTPRF-208ENST00000437607 AMELXQ99217 191 aa8.17□□□□□ -1.1
PTPRF-208ENST00000437607 TRAV13-1A0A0B4J241 112 aa8.16□□□□□ -1.1
PTPRF-208ENST00000437607 KLK12Q9UKR0 248 aa8.16□□□□□ -1.1
PTPRF-208ENST00000437607 CHTOPQ9Y3Y2 248 aaKnown RBP8.16□□□□□ -1.1
PTPRF-208ENST00000437607 EPM2AB3EWF7 344 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 F8VRH5 84 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 XGP55808 180 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 REG3AQ06141 175 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 ODF1Q14990 250 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 ZC2HC1BQ5TFG8 222 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 LINC00269Q8N2A0 174 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 CST9LQ9H4G1 147 aa8.15□□□□□ -1.1
PTPRF-208ENST00000437607 FLG2Q5D862 2391 aaPredicted RBP8.14□□□□□ -1.11
PTPRF-208ENST00000437607 TRAV9-2A0A087WT02 112 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 SCGB1D1O95968 90 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 PLNP26678 52 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 SEC11AP67812 179 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 LINC01545Q5VT33 79 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 FAM104AQ969W3 186 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 UBE2WQ96B02 151 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 PMCHL2Q9BQD1 86 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 CHAC1Q9BUX1 264 aa8.14□□□□□ -1.11
PTPRF-208ENST00000437607 MRPL35Q9NZE8 188 aaKnown RBP8.14□□□□□ -1.11
PTPRF-208ENST00000437607 LOC105371267A0A1B0GV96 52 aa8.13□□□□□ -1.11
PTPRF-208ENST00000437607 K7EP13 123 aa8.13□□□□□ -1.11
PTPRF-208ENST00000437607 DPM2O94777 84 aa8.13□□□□□ -1.11
PTPRF-208ENST00000437607 UBE2D1P51668 147 aa8.13□□□□□ -1.11
PTPRF-208ENST00000437607 SS18Q15532 418 aa8.13□□□□□ -1.11
PTPRF-208ENST00000437607 GEMIN7Q9H840 131 aaKnown RBP8.13□□□□□ -1.11
PTPRF-208ENST00000437607 IGLC3P0DOY3 106 aa8.12□□□□□ -1.11
PTPRF-208ENST00000437607 PRR34Q9NV39 138 aa8.12□□□□□ -1.11
PTPRF-208ENST00000437607 IGLV4-69A0A075B6H9 119 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 A0A0J9YXV3 536 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 LINC00959A0A1B0GUT2 108 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 CCL25O15444 150 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 IGKCP01834 107 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 INAFM2P0DMQ5 153 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 HERVK_113P63121 156 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 JOSD1Q15040 202 aaPredicted RBP8.11□□□□□ -1.11
PTPRF-208ENST00000437607 MIAQ16674 131 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 LINC00469Q8N7U9 141 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 PGPEP1Q9NXJ5 209 aa8.11□□□□□ -1.11
PTPRF-208ENST00000437607 IGLV10-54A0A075B6I4 117 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 TRAV8-3A0A0A6YYJ7 113 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 TRAV8-4A0A0B4J246 113 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 TINCRA0A1B0GVN0 87 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 C11orf86A6NJI1 115 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 SMIM6P0DI80 62 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 KRTAP10-1P60331 282 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 NFE4Q86UQ8 179 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 RMI2Q96E14 147 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 C1orf43Q9BWL3 253 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 Q9HAA7 133 aa8.1□□□□□ -1.11
PTPRF-208ENST00000437607 IBA57-AS1B1ANH7 110 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 XCL1P47992 114 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 HERVK_113P61574 105 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 PYY3Q5JQD4 70 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 TMEM170BQ5T4T1 132 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 LINC00242Q5T6M2 205 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 Q5VSD8 79 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 ENHOQ6UWT2 76 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 FAM19A3Q7Z5A8 133 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 ATOH7Q8N100 152 aa8.09□□□□□ -1.11
PTPRF-208ENST00000437607 CHCHD10Q8WYQ3 142 aaPredicted RBP8.09□□□□□ -1.11
PTPRF-208ENST00000437607 IGKV2D-24A0A075B6R9 120 aa8.08□□□□□ -1.12
PTPRF-208ENST00000437607 HSBP1L1C9JCN9 74 aa8.08□□□□□ -1.12
PTPRF-208ENST00000437607 H3BRM9 83 aa8.08□□□□□ -1.12
PTPRF-208ENST00000437607 ZNF22P17026 224 aaPredicted RBP8.08□□□□□ -1.12
PTPRF-208ENST00000437607 CDPF1Q6NVV7 123 aa8.08□□□□□ -1.12
PTPRF-208ENST00000437607 PKHD1L1Q86WI1 4243 aa8.07□□□□□ -1.12
PTPRF-208ENST00000437607 A0A087WTM6 91 aa8.07□□□□□ -1.12
PTPRF-208ENST00000437607 IGLV5-45A0A087WSX0 123 aa8.06□□□□□ -1.12
PTPRF-208ENST00000437607 GAGE12HA6NDE8 117 aa8.06□□□□□ -1.12
PTPRF-208ENST00000437607 EREGO14944 169 aa8.06□□□□□ -1.12
PTPRF-208ENST00000437607 CD164L2Q6UWJ8 174 aa8.06□□□□□ -1.12
PTPRF-208ENST00000437607 VAMP8Q9BV40 100 aa8.06□□□□□ -1.12
PTPRF-208ENST00000437607 FAT3Q8TDW7 4589 aa8.05□□□□□ -1.12
PTPRF-208ENST00000437607 COX7A2LO14548 114 aa8.05□□□□□ -1.12
PTPRF-208ENST00000437607 SMR3BP02814 79 aaPredicted RBP8.05□□□□□ -1.12
PTPRF-208ENST00000437607 CDKN2A-AS1Q9UH64 79 aa8.05□□□□□ -1.12
PTPRF-208ENST00000437607 COX11Q9Y6N1 276 aa8.05□□□□□ -1.12
PTPRF-208ENST00000437607 SPINK8P0C7L1 97 aa8.04□□□□□ -1.12
PTPRF-208ENST00000437607 MALP21145 153 aa8.04□□□□□ -1.12
PTPRF-208ENST00000437607 S100A12P80511 92 aa8.04□□□□□ -1.12
PTPRF-208ENST00000437607 HAMPP81172 84 aa8.04□□□□□ -1.12
PTPRF-208ENST00000437607 COX6A2Q02221 97 aa8.04□□□□□ -1.12
PTPRF-208ENST00000437607 C5orf38Q86SI9 138 aa8.04□□□□□ -1.12
PTPRF-208ENST00000437607 TM2D2Q9BX73 214 aa8.04□□□□□ -1.12
PTPRF-208ENST00000437607 LRP1Q07954 4544 aaKnown RBP8.03□□□□□ -1.12
PTPRF-208ENST00000437607 A0A087WZ39 114 aa8.03□□□□□ -1.12
PTPRF-208ENST00000437607 IGHV3OR16-9A0A0B4J2B5 98 aa8.03□□□□□ -1.12
PTPRF-208ENST00000437607 hDV102S1A0JD36 115 aa8.03□□□□□ -1.12
PTPRF-208ENST00000437607 FOXI1Q12951 378 aa8.03□□□□□ -1.12
PTPRF-208ENST00000437607 IGHV3-64A0A075B6Q5 118 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms