RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 IGHV3-64A0A075B6Q5 118 aa14.68□□□□□ -0.06
PTPRF-207ENST00000436724 F8W1H4 67 aa14.68□□□□□ -0.06
PTPRF-207ENST00000436724 DEFB121Q5J5C9 76 aa14.68□□□□□ -0.06
PTPRF-207ENST00000436724 CDC42SE2Q9NRR3 84 aa14.68□□□□□ -0.06
PTPRF-207ENST00000436724 MRAPQ8TCY5 172 aa14.68□□□□□ -0.06
PTPRF-207ENST00000436724 A0A0J9YWU9 116 aa14.67□□□□□ -0.06
PTPRF-207ENST00000436724 LEPROTO15243 131 aa14.67□□□□□ -0.06
PTPRF-207ENST00000436724 IGHV3-30P01768 117 aa14.67□□□□□ -0.06
PTPRF-207ENST00000436724 IGHV3-30-5P0DP03 117 aa14.67□□□□□ -0.06
PTPRF-207ENST00000436724 RPL24P83731 157 aaKnown RBP14.67□□□□□ -0.06
PTPRF-207ENST00000436724 TEX48A0A1B0GUV7 120 aa14.67□□□□□ -0.06
PTPRF-207ENST00000436724 LGALS3P17931 250 aaKnown RBP14.66□□□□□ -0.06
PTPRF-207ENST00000436724 IGLV4-60A0A075B6I1 120 aa14.66□□□□□ -0.06
PTPRF-207ENST00000436724 PRO0461Q9UI25 63 aa14.66□□□□□ -0.06
PTPRF-207ENST00000436724 TRAV13-1A0A0B4J241 112 aa14.65□□□□□ -0.06
PTPRF-207ENST00000436724 TINCRA0A1B0GVN0 87 aa14.65□□□□□ -0.06
PTPRF-207ENST00000436724 TMEM101Q96IK0 257 aa14.65□□□□□ -0.06
PTPRF-207ENST00000436724 H7C423 109 aa14.64□□□□□ -0.07
PTPRF-207ENST00000436724 Q6ZTC4 211 aa14.64□□□□□ -0.07
PTPRF-207ENST00000436724 C11orf68Q9H3H3 251 aaKnown RBP14.64□□□□□ -0.07
PTPRF-207ENST00000436724 APOMO95445 188 aa14.64□□□□□ -0.07
PTPRF-207ENST00000436724 TSPAN13O95857 204 aa14.64□□□□□ -0.07
PTPRF-207ENST00000436724 COX6A2Q02221 97 aa14.64□□□□□ -0.07
PTPRF-207ENST00000436724 KPRPQ5T749 579 aaPredicted RBP14.64□□□□□ -0.07
PTPRF-207ENST00000436724 CFC1BP0CG36 223 aa14.63□□□□□ -0.07
PTPRF-207ENST00000436724 CFC1P0CG37 223 aa14.63□□□□□ -0.07
PTPRF-207ENST00000436724 SMAGPQ0VAQ4 97 aa14.63□□□□□ -0.07
PTPRF-207ENST00000436724 LINC00242Q5T6M2 205 aa14.63□□□□□ -0.07
PTPRF-207ENST00000436724 GEMIN7Q9H840 131 aaKnown RBP14.63□□□□□ -0.07
PTPRF-207ENST00000436724 TRAV8-3A0A0A6YYJ7 113 aa14.62□□□□□ -0.07
PTPRF-207ENST00000436724 CDKN2A-AS1Q9UH64 79 aa14.61□□□□□ -0.07
PTPRF-207ENST00000436724 SH2D6Q7Z4S9 175 aa14.61□□□□□ -0.07
PTPRF-207ENST00000436724 MTURNQ8N3F0 131 aa14.61□□□□□ -0.07
PTPRF-207ENST00000436724 IGKV3OR2-268A0A0C4DH90 116 aa14.6□□□□□ -0.07
PTPRF-207ENST00000436724 TMEM262E9PQX1 116 aa14.6□□□□□ -0.07
PTPRF-207ENST00000436724 NANOS2P60321 138 aaKnown RBP14.6□□□□□ -0.07
PTPRF-207ENST00000436724 SPINK8P0C7L1 97 aa14.6□□□□□ -0.07
PTPRF-207ENST00000436724 MRPL23Q16540 153 aaKnown RBP14.6□□□□□ -0.07
PTPRF-207ENST00000436724 SFTA2Q6UW10 78 aa14.59□□□□□ -0.07
PTPRF-207ENST00000436724 ETDBQ3ZM63 59 aa14.58□□□□□ -0.07
PTPRF-207ENST00000436724 SPATA25Q9BR10 227 aa14.58□□□□□ -0.07
PTPRF-207ENST00000436724 TM2D3Q9BRN9 247 aa14.58□□□□□ -0.07
PTPRF-207ENST00000436724 ICOSQ9Y6W8 199 aa14.58□□□□□ -0.07
PTPRF-207ENST00000436724 HUWE1Q7Z6Z7 4374 aaKnown RBP14.58□□□□□ -0.07
PTPRF-207ENST00000436724 TIRAPP58753 221 aa14.58□□□□□ -0.08
PTPRF-207ENST00000436724 C10orf126Q8N4M7 172 aa14.58□□□□□ -0.08
PTPRF-207ENST00000436724 IGHV3-30-3P0DP02 117 aa14.57□□□□□ -0.08
PTPRF-207ENST00000436724 Q8N3U1 123 aa14.57□□□□□ -0.08
PTPRF-207ENST00000436724 LOC107984156A0A0G2JMH3 177 aa14.57□□□□□ -0.08
PTPRF-207ENST00000436724 ARL17AQ8IVW1 177 aa14.57□□□□□ -0.08
PTPRF-207ENST00000436724 C11orf45Q8TAV5 145 aa14.57□□□□□ -0.08
PTPRF-207ENST00000436724 IGLV5-45A0A087WSX0 123 aa14.56□□□□□ -0.08
PTPRF-207ENST00000436724 EIF4EBP3O60516 100 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-207ENST00000436724 HERVK_113P63121 156 aa14.56□□□□□ -0.08
PTPRF-207ENST00000436724 PSMB2P49721 201 aa14.55□□□□□ -0.08
PTPRF-207ENST00000436724 FAM19A3Q7Z5A8 133 aa14.55□□□□□ -0.08
PTPRF-207ENST00000436724 IGHV1-58A0A0C4DH39 117 aa14.54□□□□□ -0.08
PTPRF-207ENST00000436724 A0A0J9YXY3 114 aa14.54□□□□□ -0.08
PTPRF-207ENST00000436724 A4D1N5 150 aa14.54□□□□□ -0.08
PTPRF-207ENST00000436724 SMCPP49901 116 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-207ENST00000436724 MUSTN1Q8IVN3 82 aa14.54□□□□□ -0.08
PTPRF-207ENST00000436724 PRO1854Q9UHT4 67 aa14.54□□□□□ -0.08
PTPRF-207ENST00000436724 COL7A1Q02388 2944 aa14.53□□□□□ -0.08
PTPRF-207ENST00000436724 CLPSL2Q6UWE3 100 aa14.53□□□□□ -0.08
PTPRF-207ENST00000436724 A0A1B0GUV1 79 aa14.52□□□□□ -0.08
PTPRF-207ENST00000436724 DEFB131BA0A096LNP1 70 aa14.5□□□□□ -0.09
PTPRF-207ENST00000436724 TCL1BO95988 128 aa14.5□□□□□ -0.09
PTPRF-207ENST00000436724 LITAFQ99732 161 aa14.5□□□□□ -0.09
PTPRF-207ENST00000436724 TMEM238C9JI98 176 aa14.5□□□□□ -0.09
PTPRF-207ENST00000436724 LYPD5Q6UWN5 251 aa14.5□□□□□ -0.09
PTPRF-207ENST00000436724 LELP1Q5T871 98 aa14.49□□□□□ -0.09
PTPRF-207ENST00000436724 DNHD1Q96M86 4753 aa14.49□□□□□ -0.09
PTPRF-207ENST00000436724 SMIM1B2RUZ4 78 aa14.49□□□□□ -0.09
PTPRF-207ENST00000436724 IGHV3-33P01772 117 aa14.49□□□□□ -0.09
PTPRF-207ENST00000436724 LINC00959A0A1B0GUT2 108 aa14.48□□□□□ -0.09
PTPRF-207ENST00000436724 LYRM7Q5U5X0 104 aa14.48□□□□□ -0.09
PTPRF-207ENST00000436724 H3BNG1 76 aa14.47□□□□□ -0.09
PTPRF-207ENST00000436724 A0A0B4J2C4 111 aa14.47□□□□□ -0.09
PTPRF-207ENST00000436724 J3QR89 54 aa14.47□□□□□ -0.09
PTPRF-207ENST00000436724 LINC00269Q8N2A0 174 aa14.47□□□□□ -0.09
PTPRF-207ENST00000436724 TRBV20-1A0A075B6N2 111 aa14.46□□□□□ -0.09
PTPRF-207ENST00000436724 ADAMTSL4-AS1Q5T5F5 129 aa14.46□□□□□ -0.09
PTPRF-207ENST00000436724 NDUFA12Q9UI09 145 aa14.46□□□□□ -0.09
PTPRF-207ENST00000436724 IGLV5-39A0A0G2JS06 123 aa14.46□□□□□ -0.1
PTPRF-207ENST00000436724 ANGP03950 147 aaKnown RBP14.46□□□□□ -0.1
PTPRF-207ENST00000436724 IGHV3OR16-9A0A0B4J2B5 98 aa14.44□□□□□ -0.1
PTPRF-207ENST00000436724 SCGB1C2P0DMR2 95 aa14.44□□□□□ -0.1
PTPRF-207ENST00000436724 GAGE12HA6NDE8 117 aa14.44□□□□□ -0.1
PTPRF-207ENST00000436724 ZFAND6Q6FIF0 208 aa14.44□□□□□ -0.1
PTPRF-207ENST00000436724 ERG28Q9UKR5 140 aa14.44□□□□□ -0.1
PTPRF-207ENST00000436724 DNAH9Q9NYC9 4486 aa14.44□□□□□ -0.1
PTPRF-207ENST00000436724 STAB2Q8WWQ8 2551 aa14.43□□□□□ -0.1
PTPRF-207ENST00000436724 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-207ENST00000436724 XCL1P47992 114 aa14.43□□□□□ -0.1
PTPRF-207ENST00000436724 FOXI1Q12951 378 aa14.43□□□□□ -0.1
PTPRF-207ENST00000436724 C5orf38Q86SI9 138 aa14.42□□□□□ -0.1
PTPRF-207ENST00000436724 SPANXDQ9BXN6 97 aa14.41□□□□□ -0.1
PTPRF-207ENST00000436724 SPANXCQ9NY87 97 aa14.41□□□□□ -0.1
PTPRF-207ENST00000436724 H7C2G1 150 aa14.41□□□□□ -0.1
PTPRF-207ENST00000436724 PRSS2P07478 247 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms