RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TRBV6-4A0A1B0GX49 114 aa10.49□□□□□ -0.73
USP4-203ENST00000415188 RNASE13Q5GAN3 156 aaKnown RBP10.49□□□□□ -0.73
USP4-203ENST00000415188 MUSTN1Q8IVN3 82 aa10.49□□□□□ -0.73
USP4-203ENST00000415188 DNAH7Q8WXX0 4024 aa10.49□□□□□ -0.73
USP4-203ENST00000415188 TRAV8-3A0A0A6YYJ7 113 aa10.49□□□□□ -0.73
USP4-203ENST00000415188 RPL35AP18077 110 aaKnown RBP10.49□□□□□ -0.73
USP4-203ENST00000415188 WFDC2Q14508 124 aa10.49□□□□□ -0.73
USP4-203ENST00000415188 ATP6V0E2Q8NHE4 81 aa10.49□□□□□ -0.73
USP4-203ENST00000415188 LITAFQ99732 161 aa10.49□□□□□ -0.73
USP4-203ENST00000415188 LOC107984156A0A0G2JMH3 177 aa10.48□□□□□ -0.73
USP4-203ENST00000415188 TEX48A0A1B0GUV7 120 aa10.48□□□□□ -0.73
USP4-203ENST00000415188 IGHV3-33P01772 117 aa10.48□□□□□ -0.73
USP4-203ENST00000415188 SPINK8P0C7L1 97 aa10.48□□□□□ -0.73
USP4-203ENST00000415188 IFITM1P13164 125 aa10.48□□□□□ -0.73
USP4-203ENST00000415188 ARL17AQ8IVW1 177 aa10.48□□□□□ -0.73
USP4-203ENST00000415188 TRGV2A0A075B6R0 118 aa10.47□□□□□ -0.73
USP4-203ENST00000415188 IGLV5-39A0A0G2JS06 123 aa10.47□□□□□ -0.73
USP4-203ENST00000415188 NDUFA1O15239 70 aa10.47□□□□□ -0.73
USP4-203ENST00000415188 PCP4P48539 62 aa10.47□□□□□ -0.73
USP4-203ENST00000415188 MIAQ16674 131 aa10.47□□□□□ -0.73
USP4-203ENST00000415188 TMEM243Q9BU79 118 aa10.47□□□□□ -0.73
USP4-203ENST00000415188 ERG28Q9UKR5 140 aa10.47□□□□□ -0.73
USP4-203ENST00000415188 GAGE12JA6NER3 117 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 PSMB2P49721 201 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 GAGE4Q13068 117 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 GAGE5Q13069 117 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 NTM-AS1Q6ZSK4 140 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 TMEM101Q96IK0 257 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 WFDC10AQ9H1F0 79 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 CDKN2A-AS1Q9UH64 79 aa10.46□□□□□ -0.74
USP4-203ENST00000415188 DYNC2H1Q8NCM8 4307 aaKnown RBP10.46□□□□□ -0.74
USP4-203ENST00000415188 GAGE7O76087 117 aa10.45□□□□□ -0.74
USP4-203ENST00000415188 GAGE12FP0CL80 117 aa10.45□□□□□ -0.74
USP4-203ENST00000415188 GAGE12GP0CL81 117 aa10.45□□□□□ -0.74
USP4-203ENST00000415188 GAGE12IP0CL82 117 aa10.45□□□□□ -0.74
USP4-203ENST00000415188 UBE2L6O14933 153 aa10.44□□□□□ -0.74
USP4-203ENST00000415188 IGHV4-30-4P0DP06 118 aa10.44□□□□□ -0.74
USP4-203ENST00000415188 LINC00242Q5T6M2 205 aa10.44□□□□□ -0.74
USP4-203ENST00000415188 COPS9Q8WXC6 57 aa10.44□□□□□ -0.74
USP4-203ENST00000415188 CDC42SE2Q9NRR3 84 aa10.44□□□□□ -0.74
USP4-203ENST00000415188 TRGV4A0A0C4DH28 118 aa10.43□□□□□ -0.74
USP4-203ENST00000415188 M0QXV9 152 aa10.43□□□□□ -0.74
USP4-203ENST00000415188 SCGB1C2P0DMR2 95 aa10.43□□□□□ -0.74
USP4-203ENST00000415188 LINC00694P0DN24 101 aa10.43□□□□□ -0.74
USP4-203ENST00000415188 CIRBPQ14011 172 aaKnown RBP10.43□□□□□ -0.74
USP4-203ENST00000415188 KIR2DL5BQ8NHK3 375 aa10.43□□□□□ -0.74
USP4-203ENST00000415188 EIF4EBP3O60516 100 aaPredicted RBP10.42□□□□□ -0.74
USP4-203ENST00000415188 TCL1BO95988 128 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 ETDBQ3ZM63 59 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 LINC00612Q8N6U2 182 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 SACSQ9NZJ4 4579 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 SMIM9A6NGZ8 99 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 C3orf84H3BNL1 204 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 MUC7Q8TAX7 377 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 PPDPFQ9H3Y8 114 aa10.42□□□□□ -0.74
USP4-203ENST00000415188 RYR2Q92736 4967 aa10.41□□□□□ -0.74
USP4-203ENST00000415188 TRBV30A0A0K0K1B3 111 aa10.41□□□□□ -0.74
USP4-203ENST00000415188 COX6A2Q02221 97 aa10.41□□□□□ -0.74
USP4-203ENST00000415188 FHL2Q14192 279 aa10.41□□□□□ -0.74
USP4-203ENST00000415188 SMIM1B2RUZ4 78 aa10.4□□□□□ -0.74
USP4-203ENST00000415188 PRSS2P07478 247 aa10.4□□□□□ -0.74
USP4-203ENST00000415188 SMCPP49901 116 aaPredicted RBP10.4□□□□□ -0.74
USP4-203ENST00000415188 HERV-K104P63124 156 aa10.4□□□□□ -0.74
USP4-203ENST00000415188 ADAMTSL4-AS1Q5T5F5 129 aa10.4□□□□□ -0.74
USP4-203ENST00000415188 SH2D6Q7Z4S9 175 aa10.4□□□□□ -0.74
USP4-203ENST00000415188 TM2D3Q9BRN9 247 aa10.4□□□□□ -0.74
USP4-203ENST00000415188 A8MZ25 164 aa10.39□□□□□ -0.75
USP4-203ENST00000415188 Q1RN00 199 aa10.39□□□□□ -0.75
USP4-203ENST00000415188 CASC10Q5T4H9 136 aa10.39□□□□□ -0.75
USP4-203ENST00000415188 STARD9Q9P2P6 4700 aa10.38□□□□□ -0.75
USP4-203ENST00000415188 TRAV13-1A0A0B4J241 112 aa10.38□□□□□ -0.75
USP4-203ENST00000415188 F5H768 121 aa10.38□□□□□ -0.75
USP4-203ENST00000415188 ATXN8Q156A1 80 aa10.38□□□□□ -0.75
USP4-203ENST00000415188 SFTA2Q6UW10 78 aa10.38□□□□□ -0.75
USP4-203ENST00000415188 TEN1Q86WV5 123 aa10.37□□□□□ -0.75
USP4-203ENST00000415188 PPDPFLQ8WWR9 84 aa10.37□□□□□ -0.75
USP4-203ENST00000415188 LINC01600Q96MT4 127 aa10.37□□□□□ -0.75
USP4-203ENST00000415188 Q9H8V8 135 aa10.37□□□□□ -0.75
USP4-203ENST00000415188 TRBV6-8A0A0A6YYG3 113 aa10.36□□□□□ -0.75
USP4-203ENST00000415188 FOXI1Q12951 378 aa10.36□□□□□ -0.75
USP4-203ENST00000415188 MTURNQ8N3F0 131 aa10.36□□□□□ -0.75
USP4-203ENST00000415188 ZNF625Q96I27 306 aaPredicted RBP10.36□□□□□ -0.75
USP4-203ENST00000415188 SPATA25Q9BR10 227 aa10.36□□□□□ -0.75
USP4-203ENST00000415188 LOC100131303A0A0U1RQF7 123 aa10.36□□□□□ -0.75
USP4-203ENST00000415188 COX6CP09669 75 aa10.36□□□□□ -0.75
USP4-203ENST00000415188 ICOSQ9Y6W8 199 aa10.36□□□□□ -0.75
USP4-203ENST00000415188 TENM2Q9NT68 2774 aa10.35□□□□□ -0.75
USP4-203ENST00000415188 LYRM9A8MSI8 78 aa10.34□□□□□ -0.75
USP4-203ENST00000415188 H7C2G1 150 aa10.34□□□□□ -0.75
USP4-203ENST00000415188 LINC00308Q8TCZ7 52 aa10.34□□□□□ -0.75
USP4-203ENST00000415188 RETNQ9HD89 108 aa10.34□□□□□ -0.75
USP4-203ENST00000415188 CSMD3Q7Z407 3707 aa10.33□□□□□ -0.76
USP4-203ENST00000415188 GAGE12HA6NDE8 117 aa10.33□□□□□ -0.76
USP4-203ENST00000415188 TRIAP1O43715 76 aa10.33□□□□□ -0.76
USP4-203ENST00000415188 SLC25A20O43772 301 aa10.33□□□□□ -0.76
USP4-203ENST00000415188 GAGE6Q13070 117 aa10.33□□□□□ -0.76
USP4-203ENST00000415188 X6R8D5 127 aa10.33□□□□□ -0.76
USP4-203ENST00000415188 LINC01620Q4KN68 170 aa10.32□□□□□ -0.76
USP4-203ENST00000415188 CHCHD5Q9BSY4 110 aa10.32□□□□□ -0.76
USP4-203ENST00000415188 C9JAW5 83 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms