RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 RPL39P62891 51 aaKnown RBP2.47□□□□□ -2.01
VPS13C-203ENST00000395896 CD164L2Q6UWJ8 174 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 HIST2H2BCQ6DN03 193 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 HIST2H2BDQ6DRA6 164 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 COX7B2Q8TF08 81 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 GAGE6Q13070 117 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 UBE2WQ96B02 151 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 UBE2D3P61077 147 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 UBE2D2P62837 147 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 ANKRD39Q53RE8 183 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 ESM1Q9NQ30 184 aa2.47□□□□□ -2.01
VPS13C-203ENST00000395896 IGKV2D-26A0A0A0MRZ7 120 aa2.46□□□□□ -2.01
VPS13C-203ENST00000395896 NHLRC4P0CG21 123 aaPredicted RBP2.46□□□□□ -2.01
VPS13C-203ENST00000395896 SND1-IT1Q9HBX3 110 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 A0A1B0GV72 72 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 C12orf74Q32Q52 190 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 C10orf99Q6UWK7 81 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 TEN1Q86WV5 123 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 C11orf21Q9P2W6 132 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 PPDPFLQ8WWR9 84 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 PPDPFQ9H3Y8 114 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 IGHV3-64A0A075B6Q5 118 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 XCL1P47992 114 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 NKAPP1Q8N9T2 125 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-203ENST00000395896 IGKV2-29A2NJV5 120 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-203ENST00000395896 A0A1B0GX51 115 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 C2orf82Q6UX34 121 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 KIF25-AS1Q9Y6Z4 181 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 TRAV10A0A0B4J240 114 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 OPRPNQ99935 248 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-203ENST00000395896 UFSP1Q6NVU6 142 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 UBE2D4Q9Y2X8 147 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 IGLV2-18A0A075B6J9 118 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 A0A087WZ39 114 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 K7EP34 96 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 TMEM256-PLSCR3K7ERE1 68 aa2.46□□□□□ -2.02
VPS13C-203ENST00000395896 AMELXQ99217 191 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 A0A0J9YY99 117 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 FRMD6-AS1P0C7T7 363 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 REG3AQ06141 175 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 CDC42SE2Q9NRR3 84 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 SCGB1A1P11684 91 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 IGHV4-30-4P0DP06 118 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 TSHBP01222 138 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 PFN2P35080 140 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 Q8IZM0 81 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 WIPF1O43516 503 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 PRR9Q5T870 116 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 DPH3Q96FX2 82 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 SPAG11BQ08648 103 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 CAMK2N2Q96S95 79 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 C11orf72Q8NBR9 251 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 DEFB131BA0A096LNP1 70 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 IGKV2D-24A0A075B6R9 120 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 TMEM223A0PJW6 202 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 H3BMG7 143 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 UBL5Q9BZL1 73 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 CDKN2A-AS1Q9UH64 79 aa2.45□□□□□ -2.02
VPS13C-203ENST00000395896 RBX1P62877 108 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 KLK12Q9UKR0 248 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 ZNF22P17026 224 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-203ENST00000395896 DEFB1P60022 68 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 ETDBQ3ZM63 59 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 SIGMAR1Q99720 223 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 LINC00310P59036 64 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 C5orf38Q86SI9 138 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-203ENST00000395896 F8WEM9 126 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 C9JAW5 83 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 P0DMU3 169 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 FAM231AP0DMU4 169 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 FAM231CP0DMU5 169 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 Q6ZUT4 128 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 A8MZ25 164 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 SPINK8P0C7L1 97 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 C1orf158Q8N1D5 194 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 A0A0U1RRA0 63 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 GAGE2BQ13066 116 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 GAGE2EQ4V326 116 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 ANKRD29Q8N6D5 301 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 GAGE2DQ9UEU5 116 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 ZNF625Q96I27 306 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-203ENST00000395896 C11orf68Q9H3H3 251 aaKnown RBP2.44□□□□□ -2.02
VPS13C-203ENST00000395896 UBE2D1P51668 147 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 DSCR8Q96T75 97 aa2.44□□□□□ -2.02
VPS13C-203ENST00000395896 TRBV30A0A0K0K1B3 111 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 KPRPQ5T749 579 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-203ENST00000395896 LINC00269Q8N2A0 174 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 NUPR2A6NF83 97 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 FUSP35637 526 aaKnown RBP eCLIP2.43□□□□□ -2.02
VPS13C-203ENST00000395896 IGLV5-45A0A087WSX0 123 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 PCP4P48539 62 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 LINC00315P59091 139 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 ORMDL1Q9P0S3 153 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 LINC00474Q9P2X8 69 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 IGHV4-28A0A0C4DH34 117 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 FXYD2P54710 66 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 MIR7-3HGQ8N6C7 128 aa2.43□□□□□ -2.02
VPS13C-203ENST00000395896 LAMTOR3Q9UHA4 124 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms