RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PAPPA-AS1Q5QFB9 102 aa14□□□□□ -0.17
CLN3-207ENST00000395653 VCX2Q9H322 139 aa14□□□□□ -0.17
CLN3-207ENST00000395653 LINC00173Q6ZV60 143 aa13.99□□□□□ -0.17
CLN3-207ENST00000395653 C5orf38Q86SI9 138 aa13.99□□□□□ -0.17
CLN3-207ENST00000395653 APOMO95445 188 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 SDIM1Q6ZPB5 146 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 ERASQ7Z444 233 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 FAT1Q14517 4588 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 IGHV3-64A0A075B6Q5 118 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 ZNF561-AS1K7EIQ3 104 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 UBE2D1P51668 147 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 LINC00242Q5T6M2 205 aa13.98□□□□□ -0.17
CLN3-207ENST00000395653 SCGB3A1Q96QR1 104 aa13.97□□□□□ -0.17
CLN3-207ENST00000395653 CHAC1Q9BUX1 264 aa13.97□□□□□ -0.17
CLN3-207ENST00000395653 LINC00614P0C842 121 aa13.96□□□□□ -0.18
CLN3-207ENST00000395653 ZC2HC1BQ5TFG8 222 aa13.96□□□□□ -0.18
CLN3-207ENST00000395653 SCXQ7RTU7 201 aa13.96□□□□□ -0.18
CLN3-207ENST00000395653 URB1-AS1Q96HZ7 61 aa13.96□□□□□ -0.18
CLN3-207ENST00000395653 LINC00526Q96FQ7 95 aa13.95□□□□□ -0.18
CLN3-207ENST00000395653 RAB5BP61020 215 aa13.94□□□□□ -0.18
CLN3-207ENST00000395653 FAM19A3Q7Z5A8 133 aa13.94□□□□□ -0.18
CLN3-207ENST00000395653 OR10D4PQ8NGN7 298 aa13.94□□□□□ -0.18
CLN3-207ENST00000395653 KRTAP4-5Q9BYR2 181 aa13.94□□□□□ -0.18
CLN3-207ENST00000395653 IGLV4-69A0A075B6H9 119 aa13.93□□□□□ -0.18
CLN3-207ENST00000395653 SMR3BP02814 79 aaPredicted RBP13.93□□□□□ -0.18
CLN3-207ENST00000395653 COX6A2Q02221 97 aa13.93□□□□□ -0.18
CLN3-207ENST00000395653 A0A087WZ39 114 aa13.92□□□□□ -0.18
CLN3-207ENST00000395653 CIRBP-AS1Q8TBR5 109 aa13.92□□□□□ -0.18
CLN3-207ENST00000395653 C2orf48Q96LS8 159 aa13.92□□□□□ -0.18
CLN3-207ENST00000395653 CARD19Q96LW7 228 aa13.92□□□□□ -0.18
CLN3-207ENST00000395653 EPM2AB3EWF7 344 aa13.91□□□□□ -0.18
CLN3-207ENST00000395653 SPAG11BQ08648 103 aa13.91□□□□□ -0.18
CLN3-207ENST00000395653 SYCNQ0VAF6 134 aa13.91□□□□□ -0.18
CLN3-207ENST00000395653 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.91□□□□□ -0.18
CLN3-207ENST00000395653 A0A096LNJ9 63 aa13.9□□□□□ -0.18
CLN3-207ENST00000395653 SEC11AP67812 179 aa13.9□□□□□ -0.18
CLN3-207ENST00000395653 CIRBPQ14011 172 aaKnown RBP13.9□□□□□ -0.18
CLN3-207ENST00000395653 ORAOV1Q8WV07 137 aa13.9□□□□□ -0.18
CLN3-207ENST00000395653 HBDP02042 147 aa13.9□□□□□ -0.19
CLN3-207ENST00000395653 LINC01561Q8N1V8 128 aa13.9□□□□□ -0.19
CLN3-207ENST00000395653 PKIGQ9Y2B9 76 aa13.9□□□□□ -0.19
CLN3-207ENST00000395653 PANO1I0J062 215 aa13.89□□□□□ -0.19
CLN3-207ENST00000395653 Q5VSD8 79 aa13.89□□□□□ -0.19
CLN3-207ENST00000395653 CAMK2N2Q96S95 79 aa13.89□□□□□ -0.19
CLN3-207ENST00000395653 ABCA13Q86UQ4 5058 aa13.88□□□□□ -0.19
CLN3-207ENST00000395653 TRGC2P03986 189 aa13.88□□□□□ -0.19
CLN3-207ENST00000395653 HERVK_113P63121 156 aa13.88□□□□□ -0.19
CLN3-207ENST00000395653 COLCA2A8K830 154 aa13.87□□□□□ -0.19
CLN3-207ENST00000395653 F8WDY8 70 aa13.87□□□□□ -0.19
CLN3-207ENST00000395653 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.87□□□□□ -0.19
CLN3-207ENST00000395653 FAM229AH3BQW9 127 aa13.87□□□□□ -0.19
CLN3-207ENST00000395653 Q6ZRU5 148 aa13.87□□□□□ -0.19
CLN3-207ENST00000395653 PMVKQ15126 192 aa13.86□□□□□ -0.19
CLN3-207ENST00000395653 CHCHD1Q96BP2 118 aaKnown RBP13.86□□□□□ -0.19
CLN3-207ENST00000395653 A0A0J9YXV3 536 aa13.85□□□□□ -0.19
CLN3-207ENST00000395653 PMCHL1Q16048 86 aa13.85□□□□□ -0.19
CLN3-207ENST00000395653 SPACA4Q8TDM5 124 aa13.85□□□□□ -0.19
CLN3-207ENST00000395653 CST9LQ9H4G1 147 aa13.85□□□□□ -0.19
CLN3-207ENST00000395653 GEMIN7Q9H840 131 aaKnown RBP13.85□□□□□ -0.19
CLN3-207ENST00000395653 CHTF8P0CG12 524 aa13.84□□□□□ -0.19
CLN3-207ENST00000395653 PDZD11Q5EBL8 140 aa13.84□□□□□ -0.19
CLN3-207ENST00000395653 LINC00528Q8N1L1 170 aa13.83□□□□□ -0.2
CLN3-207ENST00000395653 TINCRA0A1B0GVN0 87 aa13.82□□□□□ -0.2
CLN3-207ENST00000395653 KIAA0087Q14695 138 aa13.82□□□□□ -0.2
CLN3-207ENST00000395653 MRPL35Q9NZE8 188 aaKnown RBP13.82□□□□□ -0.2
CLN3-207ENST00000395653 CDKN2A-AS1Q9UH64 79 aa13.82□□□□□ -0.2
CLN3-207ENST00000395653 NDUFA1O15239 70 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 ATP5LO75964 103 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 RNF151Q2KHN1 245 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 A0A096LNI7 61 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 IGKV2-24A0A0C4DH68 120 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 BAGE3Q86Y29 109 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 DPH3Q96FX2 82 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 LINC00474Q9P2X8 69 aa13.81□□□□□ -0.2
CLN3-207ENST00000395653 IGLV5-45A0A087WSX0 123 aa13.8□□□□□ -0.2
CLN3-207ENST00000395653 A0A087WYN8 130 aa13.8□□□□□ -0.2
CLN3-207ENST00000395653 LOC107984640A0A0U1RRK4 108 aa13.8□□□□□ -0.2
CLN3-207ENST00000395653 SCO1O75880 301 aa13.8□□□□□ -0.2
CLN3-207ENST00000395653 PACRGQ96M98 296 aaPredicted RBP13.8□□□□□ -0.2
CLN3-207ENST00000395653 LINC00469Q8N7U9 141 aa13.79□□□□□ -0.2
CLN3-207ENST00000395653 PCLOQ9Y6V0 5065 aa13.79□□□□□ -0.2
CLN3-207ENST00000395653 HSBP1O75506 76 aa13.78□□□□□ -0.2
CLN3-207ENST00000395653 MAJINQ3KP22 176 aa13.78□□□□□ -0.2
CLN3-207ENST00000395653 PLAC8Q9NZF1 115 aa13.78□□□□□ -0.2
CLN3-207ENST00000395653 PLA2G1BP04054 148 aaKnown RBP13.77□□□□□ -0.21
CLN3-207ENST00000395653 C10orf25Q5T742 122 aa13.77□□□□□ -0.21
CLN3-207ENST00000395653 SRRM2Q9UQ35 2752 aaKnown RBP13.77□□□□□ -0.21
CLN3-207ENST00000395653 VPS13BQ7Z7G8 4022 aa13.76□□□□□ -0.21
CLN3-207ENST00000395653 PRSS2P07478 247 aa13.76□□□□□ -0.21
CLN3-207ENST00000395653 PTTG1IPP53801 180 aa13.76□□□□□ -0.21
CLN3-207ENST00000395653 NDUFA6P56556 154 aa13.76□□□□□ -0.21
CLN3-207ENST00000395653 UNQ6190/PRO20217Q6UXQ8 127 aa13.76□□□□□ -0.21
CLN3-207ENST00000395653 Q8IZM0 81 aa13.76□□□□□ -0.21
CLN3-207ENST00000395653 IGLC3P0DOY3 106 aa13.75□□□□□ -0.21
CLN3-207ENST00000395653 TOMM7Q9P0U1 55 aa13.75□□□□□ -0.21
CLN3-207ENST00000395653 C6orf48Q9UBA6 75 aa13.75□□□□□ -0.21
CLN3-207ENST00000395653 TRBV30A0A0K0K1B3 111 aa13.74□□□□□ -0.21
CLN3-207ENST00000395653 SMIM1B2RUZ4 78 aa13.74□□□□□ -0.21
CLN3-207ENST00000395653 GAGE2BQ13066 116 aa13.74□□□□□ -0.21
CLN3-207ENST00000395653 C6orf226Q5I0X4 101 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms