RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 IGHV3-64A0A075B6Q5 118 aa13.8□□□□□ -0.2
HDDC3-202ENST00000394272 TRAV8-3A0A0A6YYJ7 113 aa13.8□□□□□ -0.2
HDDC3-202ENST00000394272 SPINK8P0C7L1 97 aa13.8□□□□□ -0.2
HDDC3-202ENST00000394272 PRR34Q9NV39 138 aa13.8□□□□□ -0.2
HDDC3-202ENST00000394272 IGHV3OR16-9A0A0B4J2B5 98 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 CCL25O15444 150 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 IGHV3-30P01768 117 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 IGHV3-33P01772 117 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 IGHV3-30-3P0DP02 117 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 IGHV3-30-5P0DP03 117 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 SS18Q15532 418 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 MRPS16Q9Y3D3 137 aaKnown RBP13.79□□□□□ -0.2
HDDC3-202ENST00000394272 LINC00588Q9Y4M8 146 aa13.79□□□□□ -0.2
HDDC3-202ENST00000394272 J3QQQ9 107 aa13.78□□□□□ -0.2
HDDC3-202ENST00000394272 KLK12Q9UKR0 248 aa13.78□□□□□ -0.2
HDDC3-202ENST00000394272 PLEKHB2Q96CS7 222 aa13.78□□□□□ -0.2
HDDC3-202ENST00000394272 MYMXA0A1B0GTQ4 84 aa13.77□□□□□ -0.21
HDDC3-202ENST00000394272 SIVA1O15304 175 aa13.77□□□□□ -0.21
HDDC3-202ENST00000394272 CCL18P55774 89 aa13.77□□□□□ -0.21
HDDC3-202ENST00000394272 LINC01556Q5JQF7 62 aa13.77□□□□□ -0.21
HDDC3-202ENST00000394272 IGLV5-39A0A0G2JS06 123 aa13.76□□□□□ -0.21
HDDC3-202ENST00000394272 SMIM1B2RUZ4 78 aa13.76□□□□□ -0.21
HDDC3-202ENST00000394272 LYSTQ99698 3801 aa13.76□□□□□ -0.21
HDDC3-202ENST00000394272 STARD9Q9P2P6 4700 aa13.76□□□□□ -0.21
HDDC3-202ENST00000394272 ZNF815PA8K554 130 aa13.75□□□□□ -0.21
HDDC3-202ENST00000394272 LGALS3P17931 250 aaKnown RBP13.75□□□□□ -0.21
HDDC3-202ENST00000394272 XCL1P47992 114 aa13.75□□□□□ -0.21
HDDC3-202ENST00000394272 ENHOQ6UWT2 76 aa13.75□□□□□ -0.21
HDDC3-202ENST00000394272 APLNQ9ULZ1 77 aa13.75□□□□□ -0.21
HDDC3-202ENST00000394272 NUPR2A6NF83 97 aa13.74□□□□□ -0.21
HDDC3-202ENST00000394272 DNAH10OSP0CZ25 163 aa13.74□□□□□ -0.21
HDDC3-202ENST00000394272 A0A087WZ39 114 aa13.74□□□□□ -0.21
HDDC3-202ENST00000394272 CHCHD10Q8WYQ3 142 aaPredicted RBP13.74□□□□□ -0.21
HDDC3-202ENST00000394272 UPK3BQ9BT76 320 aa13.74□□□□□ -0.21
HDDC3-202ENST00000394272 HIGD1BQ9P298 99 aa13.73□□□□□ -0.21
HDDC3-202ENST00000394272 DNAH1Q9P2D7 4330 aa13.73□□□□□ -0.21
HDDC3-202ENST00000394272 CD164L2Q6UWJ8 174 aa13.72□□□□□ -0.21
HDDC3-202ENST00000394272 IGLV10-54A0A075B6I4 117 aa13.72□□□□□ -0.21
HDDC3-202ENST00000394272 C5orf38Q86SI9 138 aa13.71□□□□□ -0.21
HDDC3-202ENST00000394272 UBE2WQ96B02 151 aa13.71□□□□□ -0.21
HDDC3-202ENST00000394272 CRPP02741 224 aa13.7□□□□□ -0.22
HDDC3-202ENST00000394272 ZFAND6Q6FIF0 208 aa13.7□□□□□ -0.22
HDDC3-202ENST00000394272 KLK5Q9Y337 293 aaPredicted RBP13.7□□□□□ -0.22
HDDC3-202ENST00000394272 LINC01561Q8N1V8 128 aa13.69□□□□□ -0.22
HDDC3-202ENST00000394272 TRAV8-4A0A0B4J246 113 aa13.68□□□□□ -0.22
HDDC3-202ENST00000394272 FOXI1Q12951 378 aa13.68□□□□□ -0.22
HDDC3-202ENST00000394272 MIAQ16674 131 aa13.68□□□□□ -0.22
HDDC3-202ENST00000394272 C10orf126Q8N4M7 172 aa13.67□□□□□ -0.22
HDDC3-202ENST00000394272 SNHG12Q9BXW3 62 aa13.67□□□□□ -0.22
HDDC3-202ENST00000394272 NDUFA12Q9UI09 145 aa13.67□□□□□ -0.22
HDDC3-202ENST00000394272 LBHQ53QV2 105 aaPredicted RBP13.67□□□□□ -0.22
HDDC3-202ENST00000394272 SCGB1D4Q6XE38 83 aa13.67□□□□□ -0.22
HDDC3-202ENST00000394272 M0R143 59 aa13.65□□□□□ -0.22
HDDC3-202ENST00000394272 COX7A2LO14548 114 aa13.65□□□□□ -0.22
HDDC3-202ENST00000394272 EREGO14944 169 aa13.65□□□□□ -0.22
HDDC3-202ENST00000394272 GAGE12HA6NDE8 117 aa13.65□□□□□ -0.22
HDDC3-202ENST00000394272 NDUFA1O15239 70 aa13.64□□□□□ -0.23
HDDC3-202ENST00000394272 HSD52Q0P140 79 aa13.64□□□□□ -0.23
HDDC3-202ENST00000394272 Q9H8V8 135 aa13.64□□□□□ -0.23
HDDC3-202ENST00000394272 HINT1P49773 126 aaPredicted RBP13.63□□□□□ -0.23
HDDC3-202ENST00000394272 KRTAP26-1Q6PEX3 210 aa13.63□□□□□ -0.23
HDDC3-202ENST00000394272 COX7B2Q8TF08 81 aa13.63□□□□□ -0.23
HDDC3-202ENST00000394272 A0A0J9YXY3 114 aa13.63□□□□□ -0.23
HDDC3-202ENST00000394272 BVES-AS1Q5T3Y7 98 aa13.62□□□□□ -0.23
HDDC3-202ENST00000394272 ZNF625Q96I27 306 aaPredicted RBP13.62□□□□□ -0.23
HDDC3-202ENST00000394272 VPS13DQ5THJ4 4388 aa13.62□□□□□ -0.23
HDDC3-202ENST00000394272 TENM2Q9NT68 2774 aa13.62□□□□□ -0.23
HDDC3-202ENST00000394272 IBA57-AS1B1ANH7 110 aa13.61□□□□□ -0.23
HDDC3-202ENST00000394272 TOMM7Q9P0U1 55 aa13.61□□□□□ -0.23
HDDC3-202ENST00000394272 TGP01266 2768 aa13.6□□□□□ -0.23
HDDC3-202ENST00000394272 A0A1B0GV90 55 aa13.6□□□□□ -0.23
HDDC3-202ENST00000394272 UBE2DNLQ8IWF7 75 aa13.6□□□□□ -0.23
HDDC3-202ENST00000394272 MALP21145 153 aa13.59□□□□□ -0.23
HDDC3-202ENST00000394272 BATFQ16520 125 aa13.59□□□□□ -0.23
HDDC3-202ENST00000394272 TAL2Q16559 108 aa13.59□□□□□ -0.23
HDDC3-202ENST00000394272 Q8IZM0 81 aa13.59□□□□□ -0.23
HDDC3-202ENST00000394272 SPANXB1Q9NS25 103 aaPredicted RBP13.59□□□□□ -0.23
HDDC3-202ENST00000394272 C1orf43Q9BWL3 253 aa13.59□□□□□ -0.23
HDDC3-202ENST00000394272 LITAFQ99732 161 aa13.58□□□□□ -0.24
HDDC3-202ENST00000394272 K7EP13 123 aa13.57□□□□□ -0.24
HDDC3-202ENST00000394272 ORAOV1Q8WV07 137 aa13.57□□□□□ -0.24
HDDC3-202ENST00000394272 HIST1H4GQ99525 98 aa13.57□□□□□ -0.24
HDDC3-202ENST00000394272 KIAA0087Q14695 138 aa13.57□□□□□ -0.24
HDDC3-202ENST00000394272 HERV-K104P63124 156 aa13.56□□□□□ -0.24
HDDC3-202ENST00000394272 CEND1Q8N111 149 aa13.56□□□□□ -0.24
HDDC3-202ENST00000394272 MUC7Q8TAX7 377 aa13.56□□□□□ -0.24
HDDC3-202ENST00000394272 TM2D2Q9BX73 214 aa13.56□□□□□ -0.24
HDDC3-202ENST00000394272 IGKV2D-24A0A075B6R9 120 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 APOMO95445 188 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 Q9HAA7 133 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 TMEM238C9JI98 176 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 TIMM17BO60830 172 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 PRSS2P07478 247 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 GCSHP23434 173 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 C6orf226Q5I0X4 101 aa13.55□□□□□ -0.24
HDDC3-202ENST00000394272 SRSF9Q13242 221 aaKnown RBP eCLIP13.54□□□□□ -0.24
HDDC3-202ENST00000394272 FXYD2P54710 66 aa13.53□□□□□ -0.24
HDDC3-202ENST00000394272 SFTA2Q6UW10 78 aa13.53□□□□□ -0.24
HDDC3-202ENST00000394272 KRTAP1-5Q9BYS1 174 aa13.53□□□□□ -0.24
HDDC3-202ENST00000394272 ADAMTSL4-AS1Q5T5F5 129 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms