RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 F5H768 121 aa13.15□□□□□ -0.3
CCDC3-201ENST00000378825 ZNF843Q8N446 348 aa13.15□□□□□ -0.3
CCDC3-201ENST00000378825 DNAJC30Q96LL9 226 aa13.15□□□□□ -0.3
CCDC3-201ENST00000378825 Q6ZTI0 123 aa13.15□□□□□ -0.3
CCDC3-201ENST00000378825 ACANP16112 2415 aa13.15□□□□□ -0.3
CCDC3-201ENST00000378825 FSHBP01225 129 aa13.14□□□□□ -0.31
CCDC3-201ENST00000378825 IGKV3OR2-268A0A0C4DH90 116 aa13.13□□□□□ -0.31
CCDC3-201ENST00000378825 INSP01308 110 aa13.12□□□□□ -0.31
CCDC3-201ENST00000378825 MTORP42345 2549 aa13.12□□□□□ -0.31
CCDC3-201ENST00000378825 C1orf158Q8N1D5 194 aa13.12□□□□□ -0.31
CCDC3-201ENST00000378825 FAM110AQ9BQ89 295 aa13.12□□□□□ -0.31
CCDC3-201ENST00000378825 C11orf44Q8N8P7 122 aa13.12□□□□□ -0.31
CCDC3-201ENST00000378825 GAGE2AQ6NT46 116 aa13.12□□□□□ -0.31
CCDC3-201ENST00000378825 LINC00337Q8N6G1 96 aa13.12□□□□□ -0.31
CCDC3-201ENST00000378825 DEFB113Q30KQ7 82 aa13.11□□□□□ -0.31
CCDC3-201ENST00000378825 DYNLRB2Q8TF09 96 aa13.11□□□□□ -0.31
CCDC3-201ENST00000378825 CDC42SE2Q9NRR3 84 aa13.11□□□□□ -0.31
CCDC3-201ENST00000378825 LOC100131303A0A0U1RQF7 123 aa13.11□□□□□ -0.31
CCDC3-201ENST00000378825 TOMM7Q9P0U1 55 aa13.1□□□□□ -0.31
CCDC3-201ENST00000378825 TENM4Q6N022 2769 aa13.1□□□□□ -0.31
CCDC3-201ENST00000378825 ODF3L2Q3SX64 289 aa13.1□□□□□ -0.31
CCDC3-201ENST00000378825 KLK5Q9Y337 293 aaPredicted RBP13.1□□□□□ -0.31
CCDC3-201ENST00000378825 HIST2H2BCQ6DN03 193 aa13.09□□□□□ -0.31
CCDC3-201ENST00000378825 FN1P02751 2386 aaKnown RBP13.09□□□□□ -0.31
CCDC3-201ENST00000378825 IGKV2-28A0A075B6P5 120 aa13.09□□□□□ -0.31
CCDC3-201ENST00000378825 IGKV2D-28P01615 120 aa13.09□□□□□ -0.31
CCDC3-201ENST00000378825 TRACP01848 142 aa13.09□□□□□ -0.31
CCDC3-201ENST00000378825 DEFB114Q30KQ6 69 aa13.09□□□□□ -0.31
CCDC3-201ENST00000378825 MIR7-3HGQ8N6C7 128 aa13.09□□□□□ -0.31
CCDC3-201ENST00000378825 A0A087WYN8 130 aa13.08□□□□□ -0.32
CCDC3-201ENST00000378825 LINC00643Q86TS7 51 aa13.08□□□□□ -0.32
CCDC3-201ENST00000378825 PLA2G2AP14555 144 aa13.08□□□□□ -0.32
CCDC3-201ENST00000378825 ACYP1P07311 99 aa13.07□□□□□ -0.32
CCDC3-201ENST00000378825 RPL36AP83881 106 aaKnown RBP13.07□□□□□ -0.32
CCDC3-201ENST00000378825 RPL36ALQ969Q0 106 aaKnown RBP13.07□□□□□ -0.32
CCDC3-201ENST00000378825 K7EQD1 137 aa13.07□□□□□ -0.32
CCDC3-201ENST00000378825 ATP5G1P05496 136 aa13.07□□□□□ -0.32
CCDC3-201ENST00000378825 PPDPFQ9H3Y8 114 aa13.05□□□□□ -0.32
CCDC3-201ENST00000378825 A0A1W2PRX2 142 aa13.05□□□□□ -0.32
CCDC3-201ENST00000378825 C9orf153Q5TBE3 101 aa13.05□□□□□ -0.32
CCDC3-201ENST00000378825 SDIM1Q6ZPB5 146 aa13.05□□□□□ -0.32
CCDC3-201ENST00000378825 NOP10Q9NPE3 64 aaKnown RBP13.05□□□□□ -0.32
CCDC3-201ENST00000378825 MALP21145 153 aa13.04□□□□□ -0.32
CCDC3-201ENST00000378825 FAM19A3Q7Z5A8 133 aa13.04□□□□□ -0.32
CCDC3-201ENST00000378825 IMUPQ9GZP8 106 aa13.04□□□□□ -0.32
CCDC3-201ENST00000378825 C14orf132Q9NPU4 83 aa13.04□□□□□ -0.32
CCDC3-201ENST00000378825 PEMTQ9UBM1 199 aa13.04□□□□□ -0.32
CCDC3-201ENST00000378825 SMIM11BQ8TCY0 68 aa13.04□□□□□ -0.32
CCDC3-201ENST00000378825 SND1-IT1Q9HBX3 110 aa13.04□□□□□ -0.32
CCDC3-201ENST00000378825 NBEAL2Q6ZNJ1 2754 aa13.03□□□□□ -0.32
CCDC3-201ENST00000378825 CRPP02741 224 aa13.03□□□□□ -0.32
CCDC3-201ENST00000378825 STHQ8IWL8 128 aa13.03□□□□□ -0.32
CCDC3-201ENST00000378825 KRTAP1-3Q8IUG1 177 aa13.03□□□□□ -0.32
CCDC3-201ENST00000378825 WFDC11Q8NEX6 87 aa13.03□□□□□ -0.32
CCDC3-201ENST00000378825 IL17DQ8TAD2 202 aa13.03□□□□□ -0.32
CCDC3-201ENST00000378825 ITPR2Q14571 2701 aa13.03□□□□□ -0.32
CCDC3-201ENST00000378825 WFDC10AQ9H1F0 79 aa13.02□□□□□ -0.32
CCDC3-201ENST00000378825 CSDC2Q9Y534 153 aaKnown RBP13.02□□□□□ -0.32
CCDC3-201ENST00000378825 C3orf22Q8N5N4 141 aa13.02□□□□□ -0.33
CCDC3-201ENST00000378825 IGLV4-60A0A075B6I1 120 aa13.01□□□□□ -0.33
CCDC3-201ENST00000378825 SLPIP03973 132 aa13.01□□□□□ -0.33
CCDC3-201ENST00000378825 RPL28P46779 137 aaKnown RBP13.01□□□□□ -0.33
CCDC3-201ENST00000378825 C11orf68Q9H3H3 251 aaKnown RBP13.01□□□□□ -0.33
CCDC3-201ENST00000378825 UBE2L6O14933 153 aa13.01□□□□□ -0.33
CCDC3-201ENST00000378825 PFN2P35080 140 aa13.01□□□□□ -0.33
CCDC3-201ENST00000378825 LINC00158P58513 81 aa13.01□□□□□ -0.33
CCDC3-201ENST00000378825 IGKV3D-7A0A0C4DH55 119 aa13□□□□□ -0.33
CCDC3-201ENST00000378825 C5orf38Q86SI9 138 aa13□□□□□ -0.33
CCDC3-201ENST00000378825 COX7B2Q8TF08 81 aa13□□□□□ -0.33
CCDC3-201ENST00000378825 CYSTM1Q9H1C7 97 aa13□□□□□ -0.33
CCDC3-201ENST00000378825 LOC107984640A0A0U1RRK4 108 aa12.99□□□□□ -0.33
CCDC3-201ENST00000378825 CCL18P55774 89 aa12.99□□□□□ -0.33
CCDC3-201ENST00000378825 C4orf3Q8WVX3 66 aa12.99□□□□□ -0.33
CCDC3-201ENST00000378825 COPS9Q8WXC6 57 aa12.99□□□□□ -0.33
CCDC3-201ENST00000378825 TMEM243Q9BU79 118 aa12.99□□□□□ -0.33
CCDC3-201ENST00000378825 FAM222AQ5U5X8 452 aa12.98□□□□□ -0.33
CCDC3-201ENST00000378825 TRAV13-2A0A0B4J235 113 aa12.98□□□□□ -0.33
CCDC3-201ENST00000378825 A0A087WVE0 104 aa12.97□□□□□ -0.33
CCDC3-201ENST00000378825 TMEM126AQ9H061 195 aa12.97□□□□□ -0.33
CCDC3-201ENST00000378825 TRBV10-1A0A0K0K1A3 114 aa12.97□□□□□ -0.33
CCDC3-201ENST00000378825 NCR3O14931 201 aa12.97□□□□□ -0.33
CCDC3-201ENST00000378825 LECT2O14960 151 aa12.97□□□□□ -0.33
CCDC3-201ENST00000378825 INAFM2P0DMQ5 153 aa12.96□□□□□ -0.33
CCDC3-201ENST00000378825 LINC00846Q9NV44 126 aa12.96□□□□□ -0.33
CCDC3-201ENST00000378825 GCN1Q92616 2671 aaKnown RBP12.96□□□□□ -0.33
CCDC3-201ENST00000378825 UQCRQO14949 82 aa12.96□□□□□ -0.34
CCDC3-201ENST00000378825 DNAL4O96015 105 aa12.96□□□□□ -0.34
CCDC3-201ENST00000378825 C2orf48Q96LS8 159 aa12.96□□□□□ -0.34
CCDC3-201ENST00000378825 GIG44P09565 113 aaPredicted RBP12.95□□□□□ -0.34
CCDC3-201ENST00000378825 TRGV2A0A075B6R0 118 aa12.95□□□□□ -0.34
CCDC3-201ENST00000378825 DNAJC9-AS1A6NH13 148 aa12.95□□□□□ -0.34
CCDC3-201ENST00000378825 ESM1Q9NQ30 184 aa12.95□□□□□ -0.34
CCDC3-201ENST00000378825 LRRC75A-AS1Q8N1F1 130 aa12.94□□□□□ -0.34
CCDC3-201ENST00000378825 LINC00526Q96FQ7 95 aa12.94□□□□□ -0.34
CCDC3-201ENST00000378825 PLAC8L1A1L4L8 177 aa12.94□□□□□ -0.34
CCDC3-201ENST00000378825 OR13C6PQ8NH95 151 aa12.94□□□□□ -0.34
CCDC3-201ENST00000378825 RPL35AP18077 110 aaKnown RBP12.93□□□□□ -0.34
CCDC3-201ENST00000378825 HELZ2Q9BYK8 2649 aaKnown RBP12.93□□□□□ -0.34
CCDC3-201ENST00000378825 IGHV3OR16-9A0A0B4J2B5 98 aa12.92□□□□□ -0.34
CCDC3-201ENST00000378825 hADV29S1A0JD25 119 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms