RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 TMEM136Q6ZRR5 245 aa13.1□□□□□ -0.31
VSX1-201ENST00000376707 C5orf38Q86SI9 138 aa13.1□□□□□ -0.31
VSX1-201ENST00000376707 APOMO95445 188 aa13.09□□□□□ -0.31
VSX1-201ENST00000376707 SPINK6Q6UWN8 80 aa13.09□□□□□ -0.31
VSX1-201ENST00000376707 Q6ZRP5 223 aa13.09□□□□□ -0.31
VSX1-201ENST00000376707 ANAPC16Q96DE5 110 aa13.09□□□□□ -0.31
VSX1-201ENST00000376707 PRSS47A8MTI9 375 aa13.08□□□□□ -0.32
VSX1-201ENST00000376707 MT-ND4LP03901 98 aa13.08□□□□□ -0.32
VSX1-201ENST00000376707 C2orf48Q96LS8 159 aa13.08□□□□□ -0.32
VSX1-201ENST00000376707 PRELID3AQ96N28 172 aa13.08□□□□□ -0.32
VSX1-201ENST00000376707 REG3GQ6UW15 175 aa13.07□□□□□ -0.32
VSX1-201ENST00000376707 OPRPNQ99935 248 aaPredicted RBP13.07□□□□□ -0.32
VSX1-201ENST00000376707 LAMTOR2Q9Y2Q5 125 aa13.07□□□□□ -0.32
VSX1-201ENST00000376707 IGHV3OR16-9A0A0B4J2B5 98 aa13.06□□□□□ -0.32
VSX1-201ENST00000376707 SPAG11BQ08648 103 aa13.06□□□□□ -0.32
VSX1-201ENST00000376707 RAB5AP20339 215 aa13.05□□□□□ -0.32
VSX1-201ENST00000376707 OR10D4PQ8NGN7 298 aa13.05□□□□□ -0.32
VSX1-201ENST00000376707 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.04□□□□□ -0.32
VSX1-201ENST00000376707 RPL18AQ02543 176 aaKnown RBP13.04□□□□□ -0.32
VSX1-201ENST00000376707 CLLU1Q5K131 121 aa13.04□□□□□ -0.32
VSX1-201ENST00000376707 PYGO1Q9Y3Y4 419 aa13.04□□□□□ -0.32
VSX1-201ENST00000376707 A0A0J9YXV3 536 aa13.03□□□□□ -0.32
VSX1-201ENST00000376707 A0A1W2PNN7 141 aa13.03□□□□□ -0.32
VSX1-201ENST00000376707 IFITM10A6NMD0 228 aa13.02□□□□□ -0.33
VSX1-201ENST00000376707 IFI27P40305 119 aaPredicted RBP13.02□□□□□ -0.33
VSX1-201ENST00000376707 SRSF9Q13242 221 aaKnown RBP eCLIP13.02□□□□□ -0.33
VSX1-201ENST00000376707 RNF151Q2KHN1 245 aa13.02□□□□□ -0.33
VSX1-201ENST00000376707 C9orf116Q5BN46 136 aaPredicted RBP13.02□□□□□ -0.33
VSX1-201ENST00000376707 TNXBP22105 4242 aa13.01□□□□□ -0.33
VSX1-201ENST00000376707 F8WDY8 70 aa13.01□□□□□ -0.33
VSX1-201ENST00000376707 ORAOV1Q8WV07 137 aa13.01□□□□□ -0.33
VSX1-201ENST00000376707 MAP1LC3AQ9H492 121 aa13.01□□□□□ -0.33
VSX1-201ENST00000376707 IGLV4-3A0A075B6K6 122 aa12.99□□□□□ -0.33
VSX1-201ENST00000376707 Q8N8P6 123 aa12.99□□□□□ -0.33
VSX1-201ENST00000376707 IMMP2LQ96T52 175 aa12.99□□□□□ -0.33
VSX1-201ENST00000376707 LOC389332A0A1B0GUA5 103 aa12.98□□□□□ -0.33
VSX1-201ENST00000376707 MT-ND6P03923 174 aa12.98□□□□□ -0.33
VSX1-201ENST00000376707 KRTAP10-8P60410 259 aa12.98□□□□□ -0.33
VSX1-201ENST00000376707 ODF1Q14990 250 aa12.98□□□□□ -0.33
VSX1-201ENST00000376707 MRPL35Q9NZE8 188 aaKnown RBP12.98□□□□□ -0.33
VSX1-201ENST00000376707 TMEM141Q96I45 108 aa12.97□□□□□ -0.33
VSX1-201ENST00000376707 A0A087WZ39 114 aa12.96□□□□□ -0.33
VSX1-201ENST00000376707 TGIF2-C20orf24A0A0A6YYL0 155 aa12.96□□□□□ -0.33
VSX1-201ENST00000376707 K7EMI3 77 aa12.96□□□□□ -0.33
VSX1-201ENST00000376707 NDUFA1O15239 70 aa12.96□□□□□ -0.33
VSX1-201ENST00000376707 LINC00242Q5T6M2 205 aa12.96□□□□□ -0.33
VSX1-201ENST00000376707 UQCC3Q6UW78 93 aa12.96□□□□□ -0.33
VSX1-201ENST00000376707 PSORS1C2Q9UIG4 136 aa12.96□□□□□ -0.33
VSX1-201ENST00000376707 ADCYAP1P18509 176 aa12.95□□□□□ -0.34
VSX1-201ENST00000376707 PHF5AQ7RTV0 110 aaKnown RBP12.95□□□□□ -0.34
VSX1-201ENST00000376707 CYSLTR1Q9Y271 337 aa12.95□□□□□ -0.34
VSX1-201ENST00000376707 NPSP0C0P6 89 aa12.94□□□□□ -0.34
VSX1-201ENST00000376707 ORMDL2Q53FV1 153 aa12.94□□□□□ -0.34
VSX1-201ENST00000376707 C2orf66Q6UXQ4 117 aa12.94□□□□□ -0.34
VSX1-201ENST00000376707 UBE2D1P51668 147 aa12.93□□□□□ -0.34
VSX1-201ENST00000376707 IFITM2Q01629 132 aa12.93□□□□□ -0.34
VSX1-201ENST00000376707 TEX43Q6ZNM6 134 aa12.93□□□□□ -0.34
VSX1-201ENST00000376707 CTDSP1Q9GZU7 261 aa12.93□□□□□ -0.34
VSX1-201ENST00000376707 TMEM218A2RU14 115 aa12.92□□□□□ -0.34
VSX1-201ENST00000376707 TLX1NBP0CAT3 122 aa12.92□□□□□ -0.34
VSX1-201ENST00000376707 KIAA0087Q14695 138 aa12.92□□□□□ -0.34
VSX1-201ENST00000376707 C1orf137Q5JT78 98 aa12.92□□□□□ -0.34
VSX1-201ENST00000376707 C10orf25Q5T742 122 aa12.92□□□□□ -0.34
VSX1-201ENST00000376707 UNQ6190/PRO20217Q6UXQ8 127 aa12.92□□□□□ -0.34
VSX1-201ENST00000376707 AMELXQ99217 191 aa12.92□□□□□ -0.34
VSX1-201ENST00000376707 NXT2Q9NPJ8 142 aaKnown RBP12.92□□□□□ -0.34
VSX1-201ENST00000376707 TRAV9-1A0A075B6T8 112 aa12.91□□□□□ -0.34
VSX1-201ENST00000376707 IGIPA6NJ69 53 aa12.91□□□□□ -0.34
VSX1-201ENST00000376707 LINC00173Q6ZV60 143 aa12.91□□□□□ -0.34
VSX1-201ENST00000376707 C2orf88Q9BSF0 95 aa12.91□□□□□ -0.34
VSX1-201ENST00000376707 Q6ZN92 141 aa12.9□□□□□ -0.34
VSX1-201ENST00000376707 LINC01561Q8N1V8 128 aa12.9□□□□□ -0.34
VSX1-201ENST00000376707 C6orf48Q9UBA6 75 aa12.9□□□□□ -0.34
VSX1-201ENST00000376707 VCX2Q9H322 139 aa12.89□□□□□ -0.35
VSX1-201ENST00000376707 FAM168BA1KXE4 195 aa12.88□□□□□ -0.35
VSX1-201ENST00000376707 GAGE2EQ4V326 116 aa12.88□□□□□ -0.35
VSX1-201ENST00000376707 ZC2HC1BQ5TFG8 222 aa12.88□□□□□ -0.35
VSX1-201ENST00000376707 FAM19A3Q7Z5A8 133 aa12.88□□□□□ -0.35
VSX1-201ENST00000376707 GAGE2DQ9UEU5 116 aa12.88□□□□□ -0.35
VSX1-201ENST00000376707 LRP2P98164 4655 aa12.87□□□□□ -0.35
VSX1-201ENST00000376707 G0S2P27469 103 aa12.87□□□□□ -0.35
VSX1-201ENST00000376707 FAM19A5Q7Z5A7 132 aaPredicted RBP12.87□□□□□ -0.35
VSX1-201ENST00000376707 SEC11CQ9BY50 192 aa12.87□□□□□ -0.35
VSX1-201ENST00000376707 TRBV30A0A0K0K1B3 111 aa12.85□□□□□ -0.35
VSX1-201ENST00000376707 IGLV7-43P04211 117 aa12.85□□□□□ -0.35
VSX1-201ENST00000376707 KIAA1644Q3SXP7 199 aa12.84□□□□□ -0.35
VSX1-201ENST00000376707 PAPPA-AS1Q5QFB9 102 aa12.84□□□□□ -0.35
VSX1-201ENST00000376707 DIRC1Q969H9 104 aa12.84□□□□□ -0.35
VSX1-201ENST00000376707 TOMM6Q96B49 74 aa12.84□□□□□ -0.35
VSX1-201ENST00000376707 TIMM17AQ99595 171 aa12.84□□□□□ -0.35
VSX1-201ENST00000376707 C2orf82Q6UX34 121 aa12.83□□□□□ -0.36
VSX1-201ENST00000376707 PACRGQ96M98 296 aaPredicted RBP12.83□□□□□ -0.36
VSX1-201ENST00000376707 GNB1LQ9BYB4 327 aa12.83□□□□□ -0.36
VSX1-201ENST00000376707 S100PP25815 95 aa12.81□□□□□ -0.36
VSX1-201ENST00000376707 SEC11AP67812 179 aa12.81□□□□□ -0.36
VSX1-201ENST00000376707 KRTAP11-1Q8IUC1 163 aa12.81□□□□□ -0.36
VSX1-201ENST00000376707 LINC01546A6NGU7 62 aa12.8□□□□□ -0.36
VSX1-201ENST00000376707 NDUFC2-KCTD14E9PQ53 114 aa12.8□□□□□ -0.36
VSX1-201ENST00000376707 M0QXV9 152 aa12.8□□□□□ -0.36
VSX1-201ENST00000376707 HERVK_113P63121 156 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms