RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 HINT1P49773 126 aaPredicted RBP13.5□□□□□ -0.25
CLN3-205ENST00000359984 KLK12Q9UKR0 248 aa13.5□□□□□ -0.25
CLN3-205ENST00000359984 SIVA1O15304 175 aa13.49□□□□□ -0.25
CLN3-205ENST00000359984 CLPSL2Q6UWE3 100 aa13.49□□□□□ -0.25
CLN3-205ENST00000359984 COL5A1-AS1Q5SY13 56 aa13.48□□□□□ -0.25
CLN3-205ENST00000359984 UBE2DNLQ8IWF7 75 aa13.48□□□□□ -0.25
CLN3-205ENST00000359984 IGKV2D-26A0A0A0MRZ7 120 aa13.48□□□□□ -0.25
CLN3-205ENST00000359984 PLNP26678 52 aa13.48□□□□□ -0.25
CLN3-205ENST00000359984 C11orf86A6NJI1 115 aa13.47□□□□□ -0.25
CLN3-205ENST00000359984 REG3AQ06141 175 aa13.47□□□□□ -0.25
CLN3-205ENST00000359984 PCP2Q8IVA1 136 aa13.47□□□□□ -0.25
CLN3-205ENST00000359984 LINC00959A0A1B0GUT2 108 aa13.46□□□□□ -0.25
CLN3-205ENST00000359984 LINC00242Q5T6M2 205 aa13.46□□□□□ -0.25
CLN3-205ENST00000359984 NFE4Q86UQ8 179 aa13.46□□□□□ -0.25
CLN3-205ENST00000359984 Q9H8V8 135 aa13.46□□□□□ -0.25
CLN3-205ENST00000359984 PRR34Q9NV39 138 aa13.46□□□□□ -0.26
CLN3-205ENST00000359984 TINCRA0A1B0GVN0 87 aa13.45□□□□□ -0.26
CLN3-205ENST00000359984 NMUP48645 174 aa13.45□□□□□ -0.26
CLN3-205ENST00000359984 FAM19A3Q7Z5A8 133 aa13.45□□□□□ -0.26
CLN3-205ENST00000359984 CHAC1Q9BUX1 264 aa13.45□□□□□ -0.26
CLN3-205ENST00000359984 BVES-AS1Q5T3Y7 98 aa13.44□□□□□ -0.26
CLN3-205ENST00000359984 CASC10Q5T4H9 136 aa13.44□□□□□ -0.26
CLN3-205ENST00000359984 ENHOQ6UWT2 76 aa13.44□□□□□ -0.26
CLN3-205ENST00000359984 COX6A2Q02221 97 aa13.44□□□□□ -0.26
CLN3-205ENST00000359984 C3orf84H3BNL1 204 aa13.42□□□□□ -0.26
CLN3-205ENST00000359984 SS18Q15532 418 aa13.42□□□□□ -0.26
CLN3-205ENST00000359984 UBE2WQ96B02 151 aa13.42□□□□□ -0.26
CLN3-205ENST00000359984 GEMIN7Q9H840 131 aaKnown RBP13.42□□□□□ -0.26
CLN3-205ENST00000359984 LYSTQ99698 3801 aa13.42□□□□□ -0.26
CLN3-205ENST00000359984 SEC11AP67812 179 aa13.42□□□□□ -0.26
CLN3-205ENST00000359984 ZNF22P17026 224 aaPredicted RBP13.41□□□□□ -0.26
CLN3-205ENST00000359984 HERVK_113P63121 156 aa13.41□□□□□ -0.26
CLN3-205ENST00000359984 TMEM170BQ5T4T1 132 aa13.41□□□□□ -0.26
CLN3-205ENST00000359984 CRPP02741 224 aa13.4□□□□□ -0.26
CLN3-205ENST00000359984 TTTY13Q9BZ97 58 aa13.4□□□□□ -0.26
CLN3-205ENST00000359984 IGLV10-54A0A075B6I4 117 aa13.4□□□□□ -0.26
CLN3-205ENST00000359984 CCL25O15444 150 aa13.4□□□□□ -0.26
CLN3-205ENST00000359984 IGLV5-45A0A087WSX0 123 aa13.39□□□□□ -0.27
CLN3-205ENST00000359984 CDKN2A-AS1Q9UH64 79 aa13.39□□□□□ -0.27
CLN3-205ENST00000359984 XCL1P47992 114 aa13.38□□□□□ -0.27
CLN3-205ENST00000359984 CHCHD10Q8WYQ3 142 aaPredicted RBP13.38□□□□□ -0.27
CLN3-205ENST00000359984 HIGD1BQ9P298 99 aa13.38□□□□□ -0.27
CLN3-205ENST00000359984 IBA57-AS1B1ANH7 110 aa13.38□□□□□ -0.27
CLN3-205ENST00000359984 IGHV3OR16-9A0A0B4J2B5 98 aa13.37□□□□□ -0.27
CLN3-205ENST00000359984 MIAQ16674 131 aa13.37□□□□□ -0.27
CLN3-205ENST00000359984 C10orf126Q8N4M7 172 aa13.37□□□□□ -0.27
CLN3-205ENST00000359984 MAPKAPK5-AS1Q8N8E1 139 aa13.37□□□□□ -0.27
CLN3-205ENST00000359984 DNAH1Q9P2D7 4330 aa13.36□□□□□ -0.27
CLN3-205ENST00000359984 TRAV8-4A0A0B4J246 113 aa13.36□□□□□ -0.27
CLN3-205ENST00000359984 E9PLD3 99 aa13.36□□□□□ -0.27
CLN3-205ENST00000359984 HSD52Q0P140 79 aa13.36□□□□□ -0.27
CLN3-205ENST00000359984 VPS13DQ5THJ4 4388 aa13.35□□□□□ -0.27
CLN3-205ENST00000359984 TMEM223A0PJW6 202 aa13.35□□□□□ -0.27
CLN3-205ENST00000359984 K7EP13 123 aa13.35□□□□□ -0.27
CLN3-205ENST00000359984 CD164L2Q6UWJ8 174 aa13.35□□□□□ -0.27
CLN3-205ENST00000359984 KRTAP1-5Q9BYS1 174 aa13.35□□□□□ -0.27
CLN3-205ENST00000359984 C5orf38Q86SI9 138 aa13.33□□□□□ -0.27
CLN3-205ENST00000359984 Q9HAA7 133 aa13.33□□□□□ -0.27
CLN3-205ENST00000359984 GAGE12HA6NDE8 117 aa13.33□□□□□ -0.28
CLN3-205ENST00000359984 H3BRM9 83 aa13.33□□□□□ -0.28
CLN3-205ENST00000359984 SPINK8P0C7L1 97 aa13.33□□□□□ -0.28
CLN3-205ENST00000359984 TRAV8-3A0A0A6YYJ7 113 aa13.32□□□□□ -0.28
CLN3-205ENST00000359984 FOXI1Q12951 378 aa13.32□□□□□ -0.28
CLN3-205ENST00000359984 KRTAP26-1Q6PEX3 210 aa13.32□□□□□ -0.28
CLN3-205ENST00000359984 TAX1BP3O14907 124 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 HERVK_113P61574 105 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 Q6ZVH6 145 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 IGHV3-64A0A075B6Q5 118 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 A0A087WZ39 114 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 ORAOV1Q8WV07 137 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 C1orf43Q9BWL3 253 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 COX11Q9Y6N1 276 aa13.31□□□□□ -0.28
CLN3-205ENST00000359984 IGKV2D-24A0A075B6R9 120 aa13.3□□□□□ -0.28
CLN3-205ENST00000359984 NBDYA0A0U1RRE5 68 aa13.3□□□□□ -0.28
CLN3-205ENST00000359984 SMIM1B2RUZ4 78 aa13.29□□□□□ -0.28
CLN3-205ENST00000359984 COX7A2LO14548 114 aa13.29□□□□□ -0.28
CLN3-205ENST00000359984 LY6G6CO95867 125 aa13.29□□□□□ -0.28
CLN3-205ENST00000359984 IGHV1-58A0A0C4DH39 117 aa13.28□□□□□ -0.28
CLN3-205ENST00000359984 MYMXA0A1B0GTQ4 84 aa13.28□□□□□ -0.28
CLN3-205ENST00000359984 LINC00476Q8WZB0 136 aa13.28□□□□□ -0.28
CLN3-205ENST00000359984 IGLV5-39A0A0G2JS06 123 aa13.27□□□□□ -0.28
CLN3-205ENST00000359984 TTC32Q5I0X7 151 aa13.27□□□□□ -0.28
CLN3-205ENST00000359984 LEPROTO15243 131 aa13.27□□□□□ -0.29
CLN3-205ENST00000359984 LINC01561Q8N1V8 128 aa13.27□□□□□ -0.29
CLN3-205ENST00000359984 TSPEAR-AS2P59090 65 aa13.25□□□□□ -0.29
CLN3-205ENST00000359984 RMI2Q96E14 147 aa13.25□□□□□ -0.29
CLN3-205ENST00000359984 TM2D2Q9BX73 214 aa13.25□□□□□ -0.29
CLN3-205ENST00000359984 J3QQQ9 107 aa13.24□□□□□ -0.29
CLN3-205ENST00000359984 M0R2N4 97 aa13.24□□□□□ -0.29
CLN3-205ENST00000359984 TAL2Q16559 108 aa13.24□□□□□ -0.29
CLN3-205ENST00000359984 PLEKHB2Q96CS7 222 aa13.24□□□□□ -0.29
CLN3-205ENST00000359984 MALP21145 153 aa13.23□□□□□ -0.29
CLN3-205ENST00000359984 A6NDN8 102 aa13.23□□□□□ -0.29
CLN3-205ENST00000359984 FXYD2P54710 66 aa13.23□□□□□ -0.29
CLN3-205ENST00000359984 CEND1Q8N111 149 aa13.22□□□□□ -0.29
CLN3-205ENST00000359984 ZNF815PA8K554 130 aa13.21□□□□□ -0.29
CLN3-205ENST00000359984 ALMS1Q8TCU4 4167 aa13.21□□□□□ -0.3
CLN3-205ENST00000359984 GCSHP23434 173 aa13.21□□□□□ -0.3
CLN3-205ENST00000359984 Q6ZR54 194 aa13.21□□□□□ -0.3
CLN3-205ENST00000359984 LGALS3P17931 250 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms