RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 GDF5OSQ5U4N7 250 aa7.51□□□□□ -1.21
CLIP1-202ENST00000358808 CUL9Q8IWT3 2517 aa7.51□□□□□ -1.21
CLIP1-202ENST00000358808 OXLD1Q5BKU9 147 aa7.51□□□□□ -1.21
CLIP1-202ENST00000358808 Q6Q795 121 aa7.51□□□□□ -1.21
CLIP1-202ENST00000358808 REG3GQ6UW15 175 aa7.51□□□□□ -1.21
CLIP1-202ENST00000358808 A8MZ25 164 aa7.5□□□□□ -1.21
CLIP1-202ENST00000358808 M0QY20 66 aa7.5□□□□□ -1.21
CLIP1-202ENST00000358808 NCOA6Q14686 2063 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-202ENST00000358808 OTOGLQ3ZCN5 2332 aa7.5□□□□□ -1.21
CLIP1-202ENST00000358808 TNRC6AQ8NDV7 1962 aaKnown RBP7.5□□□□□ -1.21
CLIP1-202ENST00000358808 MUC6Q6W4X9 2439 aa7.5□□□□□ -1.21
CLIP1-202ENST00000358808 LINC00208Q96KT6 92 aa7.49□□□□□ -1.21
CLIP1-202ENST00000358808 PCOTHQ58A44 107 aa7.49□□□□□ -1.21
CLIP1-202ENST00000358808 C11orf1Q9H5F2 150 aa7.49□□□□□ -1.21
CLIP1-202ENST00000358808 TRBV30A0A0K0K1B3 111 aa7.49□□□□□ -1.21
CLIP1-202ENST00000358808 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-202ENST00000358808 LINC01006Q8NI28 216 aa7.49□□□□□ -1.21
CLIP1-202ENST00000358808 SMIM11BQ8TCY0 68 aa7.49□□□□□ -1.21
CLIP1-202ENST00000358808 UTRNP46939 3433 aa7.48□□□□□ -1.21
CLIP1-202ENST00000358808 EBI3Q14213 229 aa7.48□□□□□ -1.21
CLIP1-202ENST00000358808 C1orf134Q5TEV5 83 aa7.48□□□□□ -1.21
CLIP1-202ENST00000358808 C1orf195Q5TG92 126 aa7.48□□□□□ -1.21
CLIP1-202ENST00000358808 ZNF702PQ9H963 129 aa7.48□□□□□ -1.21
CLIP1-202ENST00000358808 COX17Q14061 63 aa7.48□□□□□ -1.21
CLIP1-202ENST00000358808 MRPS12O15235 138 aaKnown RBP7.48□□□□□ -1.21
CLIP1-202ENST00000358808 C6orf223Q8N319 242 aa7.48□□□□□ -1.21
CLIP1-202ENST00000358808 COL5A1P20908 1838 aaPredicted RBP7.47□□□□□ -1.21
CLIP1-202ENST00000358808 C18orf65Q6ZTR6 163 aa7.47□□□□□ -1.21
CLIP1-202ENST00000358808 C10orf142B7Z368 130 aa7.47□□□□□ -1.21
CLIP1-202ENST00000358808 CYSRT1A8MQ03 144 aa7.46□□□□□ -1.21
CLIP1-202ENST00000358808 MRGPRG-AS1Q2M3A8 158 aa7.46□□□□□ -1.21
CLIP1-202ENST00000358808 PSMG3-AS1Q96PY0 264 aa7.46□□□□□ -1.22
CLIP1-202ENST00000358808 ABCA2Q9BZC7 2435 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 U3KQK5 164 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 C11orf71Q6IPW1 123 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 HIVEP2P31629 2446 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 NDUFA7O95182 113 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 Q9BRP9 147 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 PYGO1Q9Y3Y4 419 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 CSDC2Q9Y534 153 aaKnown RBP7.45□□□□□ -1.22
CLIP1-202ENST00000358808 MED12LQ86YW9 2145 aa7.45□□□□□ -1.22
CLIP1-202ENST00000358808 PMAIP1Q13794 54 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 C2orf48Q96LS8 159 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 LIMD2Q9BT23 127 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 TSHBP01222 138 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 LINC01547P58512 204 aaPredicted RBP7.44□□□□□ -1.22
CLIP1-202ENST00000358808 BEAN1Q3B7T3 259 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 NAV3Q8IVL0 2385 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 BRI3O95415 125 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 MAPKAPK5-AS1Q8N8E1 139 aa7.44□□□□□ -1.22
CLIP1-202ENST00000358808 Q6ZPA2 131 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 CCDC168Q8NDH2 2452 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 MYO9AB2RTY4 2548 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 Q8IZM0 81 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 PRM2P04554 102 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 BRWD1-AS2P59051 145 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 SBSPONQ8IVN8 264 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 ZNF295-AS1Q8N0V1 137 aa7.43□□□□□ -1.22
CLIP1-202ENST00000358808 HIVEP3Q5T1R4 2406 aa7.42□□□□□ -1.22
CLIP1-202ENST00000358808 NUP210LQ5VU65 1888 aa7.42□□□□□ -1.22
CLIP1-202ENST00000358808 SOSTDC1Q6X4U4 206 aa7.42□□□□□ -1.22
CLIP1-202ENST00000358808 P0C879 139 aa7.42□□□□□ -1.22
CLIP1-202ENST00000358808 PRLHP81277 87 aa7.42□□□□□ -1.22
CLIP1-202ENST00000358808 FSTL3O95633 263 aa7.42□□□□□ -1.22
CLIP1-202ENST00000358808 Q6JHZ5 121 aa7.42□□□□□ -1.22
CLIP1-202ENST00000358808 SMR3AQ99954 134 aa7.41□□□□□ -1.22
CLIP1-202ENST00000358808 UNQ6190/PRO20217Q6UXQ8 127 aa7.41□□□□□ -1.22
CLIP1-202ENST00000358808 C7orf65Q6ZTY9 151 aa7.41□□□□□ -1.22
CLIP1-202ENST00000358808 EGFEM1PQ0D2K5 195 aa7.4□□□□□ -1.22
CLIP1-202ENST00000358808 MBD6Q96DN6 1003 aa7.4□□□□□ -1.22
CLIP1-202ENST00000358808 IGKV2D-30A0A075B6S6 120 aa7.4□□□□□ -1.22
CLIP1-202ENST00000358808 IGKV2-30P06310 120 aa7.4□□□□□ -1.22
CLIP1-202ENST00000358808 NTM-AS1Q6ZSK4 140 aa7.4□□□□□ -1.22
CLIP1-202ENST00000358808 RNF185Q96GF1 192 aa7.4□□□□□ -1.22
CLIP1-202ENST00000358808 PCDH15Q96QU1 1955 aa7.4□□□□□ -1.23
CLIP1-202ENST00000358808 H0Y9P7 68 aa7.4□□□□□ -1.23
CLIP1-202ENST00000358808 LINC00574Q9H8X3 128 aa7.4□□□□□ -1.23
CLIP1-202ENST00000358808 TRBV10-3A0A0K0K1G6 114 aa7.39□□□□□ -1.23
CLIP1-202ENST00000358808 DEFB116Q30KQ4 102 aa7.39□□□□□ -1.23
CLIP1-202ENST00000358808 C9orf116Q5BN46 136 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-202ENST00000358808 MUC7Q8TAX7 377 aa7.39□□□□□ -1.23
CLIP1-202ENST00000358808 COX7CP15954 63 aa7.39□□□□□ -1.23
CLIP1-202ENST00000358808 MRPS36P82909 103 aaKnown RBP7.39□□□□□ -1.23
CLIP1-202ENST00000358808 CRYGAP11844 174 aa7.39□□□□□ -1.23
CLIP1-202ENST00000358808 TANC2Q9HCD6 1990 aa7.38□□□□□ -1.23
CLIP1-202ENST00000358808 HCG22E2RYF7 251 aa7.38□□□□□ -1.23
CLIP1-202ENST00000358808 RNASE3P12724 160 aaKnown RBP7.38□□□□□ -1.23
CLIP1-202ENST00000358808 C1orf229Q6ZS94 237 aaPredicted RBP7.38□□□□□ -1.23
CLIP1-202ENST00000358808 SMIM26A0A096LP01 95 aa7.38□□□□□ -1.23
CLIP1-202ENST00000358808 PSPHP1O15172 72 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 IMUPQ9GZP8 106 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 A0A087WSZ3 146 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 Q6ZTC4 211 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 TRBV7-7A0A0K0K1E9 115 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 YPEL4Q96NS1 127 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 LRP4O75096 1905 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 XGP55808 180 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 COX6A2Q02221 97 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 CDC42SE2Q9NRR3 84 aa7.37□□□□□ -1.23
CLIP1-202ENST00000358808 hDV103S1A0JD37 113 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 175.7 ms