RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 IMMP2LQ96T52 175 aa11.56□□□□□ -0.56
CLN3-202ENST00000355477 PYGO1Q9Y3Y4 419 aa11.56□□□□□ -0.56
CLN3-202ENST00000355477 IFITM10A6NMD0 228 aa11.55□□□□□ -0.56
CLN3-202ENST00000355477 IGLV4-3A0A075B6K6 122 aa11.54□□□□□ -0.56
CLN3-202ENST00000355477 APOMO95445 188 aa11.54□□□□□ -0.56
CLN3-202ENST00000355477 OXTP01178 125 aa11.54□□□□□ -0.56
CLN3-202ENST00000355477 IFI27P40305 119 aaPredicted RBP11.54□□□□□ -0.56
CLN3-202ENST00000355477 C2orf48Q96LS8 159 aa11.54□□□□□ -0.56
CLN3-202ENST00000355477 CAMK2N2Q96S95 79 aa11.54□□□□□ -0.56
CLN3-202ENST00000355477 LINC00474Q9P2X8 69 aa11.54□□□□□ -0.56
CLN3-202ENST00000355477 SEC11CQ9BY50 192 aa11.53□□□□□ -0.56
CLN3-202ENST00000355477 CTDSP1Q9GZU7 261 aa11.53□□□□□ -0.56
CLN3-202ENST00000355477 LOC107984640A0A0U1RRK4 108 aa11.52□□□□□ -0.57
CLN3-202ENST00000355477 SPAG11BQ08648 103 aa11.52□□□□□ -0.57
CLN3-202ENST00000355477 KIAA1644Q3SXP7 199 aa11.52□□□□□ -0.57
CLN3-202ENST00000355477 C7orf33Q8WU49 177 aa11.52□□□□□ -0.57
CLN3-202ENST00000355477 TMEM141Q96I45 108 aa11.52□□□□□ -0.57
CLN3-202ENST00000355477 PKIGQ9Y2B9 76 aa11.52□□□□□ -0.57
CLN3-202ENST00000355477 A0A0J9YXV3 536 aa11.51□□□□□ -0.57
CLN3-202ENST00000355477 PTTG1IPP53801 180 aa11.51□□□□□ -0.57
CLN3-202ENST00000355477 C2orf66Q6UXQ4 117 aa11.51□□□□□ -0.57
CLN3-202ENST00000355477 COMMD7Q86VX2 200 aa11.51□□□□□ -0.57
CLN3-202ENST00000355477 OR10D4PQ8NGN7 298 aa11.51□□□□□ -0.57
CLN3-202ENST00000355477 ORAOV1Q8WV07 137 aa11.51□□□□□ -0.57
CLN3-202ENST00000355477 GAGE2BQ13066 116 aa11.5□□□□□ -0.57
CLN3-202ENST00000355477 LINC00242Q5T6M2 205 aa11.5□□□□□ -0.57
CLN3-202ENST00000355477 ZC2HC1BQ5TFG8 222 aa11.5□□□□□ -0.57
CLN3-202ENST00000355477 CYSLTR1Q9Y271 337 aa11.5□□□□□ -0.57
CLN3-202ENST00000355477 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.49□□□□□ -0.57
CLN3-202ENST00000355477 ORMDL2Q53FV1 153 aa11.49□□□□□ -0.57
CLN3-202ENST00000355477 TRAV9-1A0A075B6T8 112 aa11.48□□□□□ -0.57
CLN3-202ENST00000355477 LINC00173Q6ZV60 143 aa11.48□□□□□ -0.57
CLN3-202ENST00000355477 NXT2Q9NPJ8 142 aaKnown RBP11.48□□□□□ -0.57
CLN3-202ENST00000355477 A0A087WZ39 114 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 TGIF2-C20orf24A0A0A6YYL0 155 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 A0A1W2PNN7 141 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 IGIPA6NJ69 53 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 K7EMI3 77 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 UBE2D1P51668 147 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 PRR3P79522 188 aaKnown RBP11.47□□□□□ -0.57
CLN3-202ENST00000355477 C10orf91Q5T1B1 145 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 C10orf25Q5T742 122 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 TEX43Q6ZNM6 134 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 AMELXQ99217 191 aa11.47□□□□□ -0.57
CLN3-202ENST00000355477 RNF151Q2KHN1 245 aa11.46□□□□□ -0.57
CLN3-202ENST00000355477 KIAA0087Q14695 138 aa11.45□□□□□ -0.58
CLN3-202ENST00000355477 UNQ6190/PRO20217Q6UXQ8 127 aa11.45□□□□□ -0.58
CLN3-202ENST00000355477 GNB1LQ9BYB4 327 aa11.45□□□□□ -0.58
CLN3-202ENST00000355477 VCX2Q9H322 139 aa11.45□□□□□ -0.58
CLN3-202ENST00000355477 MRPL35Q9NZE8 188 aaKnown RBP11.45□□□□□ -0.58
CLN3-202ENST00000355477 F8WDY8 70 aa11.44□□□□□ -0.58
CLN3-202ENST00000355477 S100PP25815 95 aa11.44□□□□□ -0.58
CLN3-202ENST00000355477 RPL18AQ02543 176 aaKnown RBP11.44□□□□□ -0.58
CLN3-202ENST00000355477 C2orf88Q9BSF0 95 aa11.44□□□□□ -0.58
CLN3-202ENST00000355477 NDUFA1O15239 70 aa11.43□□□□□ -0.58
CLN3-202ENST00000355477 Q6ZN92 141 aa11.43□□□□□ -0.58
CLN3-202ENST00000355477 C6orf48Q9UBA6 75 aa11.43□□□□□ -0.58
CLN3-202ENST00000355477 CARHSP1Q9Y2V2 147 aaKnown RBP11.43□□□□□ -0.58
CLN3-202ENST00000355477 NPSP0C0P6 89 aa11.42□□□□□ -0.58
CLN3-202ENST00000355477 MT1HL1P0DM35 61 aa11.42□□□□□ -0.58
CLN3-202ENST00000355477 C9orf116Q5BN46 136 aaPredicted RBP11.42□□□□□ -0.58
CLN3-202ENST00000355477 TOMM6Q96B49 74 aa11.42□□□□□ -0.58
CLN3-202ENST00000355477 ALKBH7Q9BT30 221 aaPredicted RBP11.42□□□□□ -0.58
CLN3-202ENST00000355477 RPS10P5Q9NQ39 176 aa11.41□□□□□ -0.58
CLN3-202ENST00000355477 RHEBQ15382 184 aa11.4□□□□□ -0.58
CLN3-202ENST00000355477 C2orf82Q6UX34 121 aa11.4□□□□□ -0.58
CLN3-202ENST00000355477 Q6ZRP5 223 aa11.4□□□□□ -0.58
CLN3-202ENST00000355477 FAM19A3Q7Z5A8 133 aa11.4□□□□□ -0.58
CLN3-202ENST00000355477 LINC01561Q8N1V8 128 aa11.4□□□□□ -0.58
CLN3-202ENST00000355477 G0S2P27469 103 aa11.39□□□□□ -0.59
CLN3-202ENST00000355477 TIMM17AQ99595 171 aa11.39□□□□□ -0.59
CLN3-202ENST00000355477 MRPL18Q9H0U6 180 aaKnown RBP11.39□□□□□ -0.59
CLN3-202ENST00000355477 LINC01546A6NGU7 62 aa11.38□□□□□ -0.59
CLN3-202ENST00000355477 TLX1NBP0CAT3 122 aa11.38□□□□□ -0.59
CLN3-202ENST00000355477 FABP9Q0Z7S8 132 aa11.37□□□□□ -0.59
CLN3-202ENST00000355477 COX19Q49B96 90 aa11.37□□□□□ -0.59
CLN3-202ENST00000355477 PHF5AQ7RTV0 110 aaKnown RBP11.37□□□□□ -0.59
CLN3-202ENST00000355477 ERASQ7Z444 233 aa11.37□□□□□ -0.59
CLN3-202ENST00000355477 FAM168BA1KXE4 195 aa11.36□□□□□ -0.59
CLN3-202ENST00000355477 SRSF9Q13242 221 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLN3-202ENST00000355477 PAPPA-AS1Q5QFB9 102 aa11.36□□□□□ -0.59
CLN3-202ENST00000355477 SERTAD4-AS1Q5TG53 156 aa11.36□□□□□ -0.59
CLN3-202ENST00000355477 SCGB3A1Q96QR1 104 aa11.36□□□□□ -0.59
CLN3-202ENST00000355477 TNXBP22105 4242 aa11.36□□□□□ -0.59
CLN3-202ENST00000355477 MT-ND6P03923 174 aa11.35□□□□□ -0.59
CLN3-202ENST00000355477 GAGE2EQ4V326 116 aa11.35□□□□□ -0.59
CLN3-202ENST00000355477 GAGE2DQ9UEU5 116 aa11.35□□□□□ -0.59
CLN3-202ENST00000355477 CDKN2A-AS1Q9UH64 79 aa11.35□□□□□ -0.59
CLN3-202ENST00000355477 TRBV30A0A0K0K1B3 111 aa11.34□□□□□ -0.59
CLN3-202ENST00000355477 HERVK_113P63121 156 aa11.34□□□□□ -0.59
CLN3-202ENST00000355477 TOMM7Q9P0U1 55 aa11.34□□□□□ -0.59
CLN3-202ENST00000355477 PSORS1C2Q9UIG4 136 aa11.34□□□□□ -0.59
CLN3-202ENST00000355477 SPINK6Q6UWN8 80 aa11.33□□□□□ -0.6
CLN3-202ENST00000355477 KRTAP7-1Q8IUC3 87 aa11.33□□□□□ -0.6
CLN3-202ENST00000355477 PRSS2P07478 247 aa11.32□□□□□ -0.6
CLN3-202ENST00000355477 SEC11AP67812 179 aa11.32□□□□□ -0.6
CLN3-202ENST00000355477 PACRGQ96M98 296 aaPredicted RBP11.32□□□□□ -0.6
CLN3-202ENST00000355477 GEMIN7Q9H840 131 aaKnown RBP11.32□□□□□ -0.6
CLN3-202ENST00000355477 APOC3P02656 99 aa11.31□□□□□ -0.6
CLN3-202ENST00000355477 C6orf226Q5I0X4 101 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms