RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 LINC01620Q4KN68 170 aa15.65■□□□□ 0.1
UPF3A-201ENST00000351487 TRGV4A0A0C4DH28 118 aa15.64■□□□□ 0.09
UPF3A-201ENST00000351487 DAND5Q8N907 189 aa15.64■□□□□ 0.09
UPF3A-201ENST00000351487 ZNF625Q96I27 306 aaPredicted RBP15.64■□□□□ 0.09
UPF3A-201ENST00000351487 NIPBLQ6KC79 2804 aaeCLIP15.63■□□□□ 0.09
UPF3A-201ENST00000351487 FHL2Q14192 279 aa15.62■□□□□ 0.09
UPF3A-201ENST00000351487 LINC00308Q8TCZ7 52 aa15.62■□□□□ 0.09
UPF3A-201ENST00000351487 CDIP1Q9H305 208 aa15.62■□□□□ 0.09
UPF3A-201ENST00000351487 COX6CP09669 75 aa15.61■□□□□ 0.09
UPF3A-201ENST00000351487 UNC79Q9P2D8 2635 aa15.61■□□□□ 0.09
UPF3A-201ENST00000351487 KMT2BQ9UMN6 2715 aaPredicted RBP15.6■□□□□ 0.09
UPF3A-201ENST00000351487 KRTAP10-3P60369 221 aa15.6■□□□□ 0.09
UPF3A-201ENST00000351487 C2CD3Q4AC94 2353 aa15.6■□□□□ 0.09
UPF3A-201ENST00000351487 RPL13AP40429 203 aaKnown RBP15.6■□□□□ 0.09
UPF3A-201ENST00000351487 HERV-K104P63124 156 aa15.6■□□□□ 0.09
UPF3A-201ENST00000351487 COPS9Q8WXC6 57 aa15.6■□□□□ 0.09
UPF3A-201ENST00000351487 TRBV10-2A0A0K0K1G8 114 aa15.59■□□□□ 0.09
UPF3A-201ENST00000351487 PRIMA1Q86XR5 153 aa15.59■□□□□ 0.09
UPF3A-201ENST00000351487 LINC00482Q8N8I6 264 aa15.59■□□□□ 0.09
UPF3A-201ENST00000351487 PPDPFQ9H3Y8 114 aa15.58■□□□□ 0.08
UPF3A-201ENST00000351487 TRBV6-8A0A0A6YYG3 113 aa15.58■□□□□ 0.08
UPF3A-201ENST00000351487 KIR2DL5BQ8NHK3 375 aa15.58■□□□□ 0.08
UPF3A-201ENST00000351487 PF4P02776 101 aa15.57■□□□□ 0.08
UPF3A-201ENST00000351487 LINC00612Q8N6U2 182 aa15.57■□□□□ 0.08
UPF3A-201ENST00000351487 SMR3AQ99954 134 aa15.57■□□□□ 0.08
UPF3A-201ENST00000351487 HELZ2Q9BYK8 2649 aaKnown RBP15.57■□□□□ 0.08
UPF3A-201ENST00000351487 HIVEP2P31629 2446 aa15.56■□□□□ 0.08
UPF3A-201ENST00000351487 SOSTDC1Q6X4U4 206 aa15.55■□□□□ 0.08
UPF3A-201ENST00000351487 GAGE6Q13070 117 aa15.55■□□□□ 0.08
UPF3A-201ENST00000351487 MEIG1Q5JSS6 88 aa15.55■□□□□ 0.08
UPF3A-201ENST00000351487 LST1O00453 97 aa15.54■□□□□ 0.08
UPF3A-201ENST00000351487 IGLV4-60A0A075B6I1 120 aa15.52■□□□□ 0.08
UPF3A-201ENST00000351487 CRLF1O75462 422 aa15.52■□□□□ 0.08
UPF3A-201ENST00000351487 NTN5Q8WTR8 489 aaPredicted RBP15.52■□□□□ 0.08
UPF3A-201ENST00000351487 A0A0U1RRA0 63 aa15.52■□□□□ 0.07
UPF3A-201ENST00000351487 H3BT86 120 aa15.52■□□□□ 0.07
UPF3A-201ENST00000351487 CLEC2BQ92478 149 aa15.52■□□□□ 0.07
UPF3A-201ENST00000351487 TMEM262E9PQX1 116 aa15.51■□□□□ 0.07
UPF3A-201ENST00000351487 CHCHD5Q9BSY4 110 aa15.5■□□□□ 0.07
UPF3A-201ENST00000351487 COX7B2Q8TF08 81 aa15.49■□□□□ 0.07
UPF3A-201ENST00000351487 IGHV3OR16-9A0A0B4J2B5 98 aa15.49■□□□□ 0.07
UPF3A-201ENST00000351487 DEFB130BP0DP73 79 aa15.49■□□□□ 0.07
UPF3A-201ENST00000351487 DEFB130AP0DP74 79 aa15.49■□□□□ 0.07
UPF3A-201ENST00000351487 X6R8D5 127 aa15.49■□□□□ 0.07
UPF3A-201ENST00000351487 LY6G6DO95868 133 aa15.48■□□□□ 0.07
UPF3A-201ENST00000351487 XGP55808 180 aa15.48■□□□□ 0.07
UPF3A-201ENST00000351487 C2orf82Q6UX34 121 aa15.48■□□□□ 0.07
UPF3A-201ENST00000351487 FASNP49327 2511 aaKnown RBP15.48■□□□□ 0.07
UPF3A-201ENST00000351487 SMIM9A6NGZ8 99 aa15.48■□□□□ 0.07
UPF3A-201ENST00000351487 SHISA2Q6UWI4 295 aa15.48■□□□□ 0.07
UPF3A-201ENST00000351487 UBE2WQ96B02 151 aa15.46■□□□□ 0.07
UPF3A-201ENST00000351487 MT-ATP8P03928 68 aa15.45■□□□□ 0.06
UPF3A-201ENST00000351487 A0A087WZ39 114 aa15.45■□□□□ 0.06
UPF3A-201ENST00000351487 TEX49A0A1B0GTD5 131 aa15.45■□□□□ 0.06
UPF3A-201ENST00000351487 COX7A2LO14548 114 aa15.45■□□□□ 0.06
UPF3A-201ENST00000351487 IGKV3OR2-268A0A0C4DH90 116 aa15.44■□□□□ 0.06
UPF3A-201ENST00000351487 GYPEP15421 78 aa15.44■□□□□ 0.06
UPF3A-201ENST00000351487 C9orf66Q5T8R8 295 aa15.43■□□□□ 0.06
UPF3A-201ENST00000351487 TOMM7Q9P0U1 55 aa15.41■□□□□ 0.06
UPF3A-201ENST00000351487 PRO0255Q9UI72 69 aa15.41■□□□□ 0.06
UPF3A-201ENST00000351487 LINC00959A0A1B0GUT2 108 aa15.41■□□□□ 0.06
UPF3A-201ENST00000351487 FAM222AQ5U5X8 452 aa15.41■□□□□ 0.06
UPF3A-201ENST00000351487 A0A1B0GUV1 79 aa15.4■□□□□ 0.06
UPF3A-201ENST00000351487 FN1P02751 2386 aaKnown RBP15.4■□□□□ 0.06
UPF3A-201ENST00000351487 MIR7-3HGQ8N6C7 128 aa15.4■□□□□ 0.06
UPF3A-201ENST00000351487 SPATA3Q8NHX4 192 aa15.4■□□□□ 0.06
UPF3A-201ENST00000351487 LYRM9A8MSI8 78 aa15.39■□□□□ 0.05
UPF3A-201ENST00000351487 TRAV13-2A0A0B4J235 113 aa15.38■□□□□ 0.05
UPF3A-201ENST00000351487 IBA57-AS1B1ANH7 110 aa15.37■□□□□ 0.05
UPF3A-201ENST00000351487 DEFB121Q5J5C9 76 aa15.37■□□□□ 0.05
UPF3A-201ENST00000351487 C5orf38Q86SI9 138 aa15.36■□□□□ 0.05
UPF3A-201ENST00000351487 TRAV8-4A0A0B4J246 113 aa15.36■□□□□ 0.05
UPF3A-201ENST00000351487 TRACP01848 142 aa15.35■□□□□ 0.05
UPF3A-201ENST00000351487 SND1-IT1Q9HBX3 110 aa15.35■□□□□ 0.05
UPF3A-201ENST00000351487 INAFM1C9JVW0 142 aa15.34■□□□□ 0.05
UPF3A-201ENST00000351487 CRPP02741 224 aa15.34■□□□□ 0.05
UPF3A-201ENST00000351487 LINC00158P58513 81 aa15.34■□□□□ 0.05
UPF3A-201ENST00000351487 IGKV2-28A0A075B6P5 120 aa15.33■□□□□ 0.05
UPF3A-201ENST00000351487 A0A1B0GV72 72 aa15.33■□□□□ 0.05
UPF3A-201ENST00000351487 IGKV2D-28P01615 120 aa15.33■□□□□ 0.05
UPF3A-201ENST00000351487 RPL28P46779 137 aaKnown RBP15.33■□□□□ 0.05
UPF3A-201ENST00000351487 PAX4O43316 350 aa15.33■□□□□ 0.04
UPF3A-201ENST00000351487 SS18Q15532 418 aa15.33■□□□□ 0.04
UPF3A-201ENST00000351487 LINC00337Q8N6G1 96 aa15.33■□□□□ 0.04
UPF3A-201ENST00000351487 GCN1Q92616 2671 aaKnown RBP15.33■□□□□ 0.04
UPF3A-201ENST00000351487 APOC4P55056 127 aa15.32■□□□□ 0.04
UPF3A-201ENST00000351487 DEFB135Q30KP9 77 aa15.32■□□□□ 0.04
UPF3A-201ENST00000351487 LINC01561Q8N1V8 128 aa15.32■□□□□ 0.04
UPF3A-201ENST00000351487 CITED1Q99966 193 aa15.32■□□□□ 0.04
UPF3A-201ENST00000351487 FAM240AA0A1B0GVK7 77 aa15.31■□□□□ 0.04
UPF3A-201ENST00000351487 CCL18P55774 89 aa15.31■□□□□ 0.04
UPF3A-201ENST00000351487 XCL1P47992 114 aa15.29■□□□□ 0.04
UPF3A-201ENST00000351487 Q8IZM0 81 aa15.29■□□□□ 0.04
UPF3A-201ENST00000351487 CKS1BP61024 79 aa15.28■□□□□ 0.04
UPF3A-201ENST00000351487 FAM218AQ96MZ4 157 aa15.28■□□□□ 0.04
UPF3A-201ENST00000351487 VWFP04275 2813 aa15.28■□□□□ 0.04
UPF3A-201ENST00000351487 NSD1Q96L73 2696 aaPredicted RBP15.28■□□□□ 0.04
UPF3A-201ENST00000351487 A0A096LPF7 62 aa15.28■□□□□ 0.04
UPF3A-201ENST00000351487 IGHV4-28A0A0C4DH34 117 aa15.28■□□□□ 0.04
UPF3A-201ENST00000351487 C6orf226Q5I0X4 101 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms