RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 FAM104AQ969W3 186 aa12.37□□□□□ -0.43
SYNE4-202ENST00000340477 CARD19Q96LW7 228 aa12.37□□□□□ -0.43
SYNE4-202ENST00000340477 SLPIP03973 132 aa12.36□□□□□ -0.43
SYNE4-202ENST00000340477 SDIM1Q6ZPB5 146 aa12.36□□□□□ -0.43
SYNE4-202ENST00000340477 TOMM6Q96B49 74 aa12.36□□□□□ -0.43
SYNE4-202ENST00000340477 TIMM17AQ99595 171 aa12.36□□□□□ -0.43
SYNE4-202ENST00000340477 IGIPA6NJ69 53 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 SYCNQ0VAF6 134 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 SLC7A5P1Q8MH63 180 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 OR10D4PQ8NGN7 298 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 CIRBP-AS1Q8TBR5 109 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 DPH3Q96FX2 82 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 SCGB3A1Q96QR1 104 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 KRTAP4-5Q9BYR2 181 aa12.34□□□□□ -0.43
SYNE4-202ENST00000340477 SPAG11BQ08648 103 aa12.33□□□□□ -0.44
SYNE4-202ENST00000340477 LINC00528Q8N1L1 170 aa12.33□□□□□ -0.44
SYNE4-202ENST00000340477 LINC00526Q96FQ7 95 aa12.33□□□□□ -0.44
SYNE4-202ENST00000340477 CAMK2N2Q96S95 79 aa12.33□□□□□ -0.44
SYNE4-202ENST00000340477 IGLV4-69A0A075B6H9 119 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 IGHV3OR16-9A0A0B4J2B5 98 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 LINC01546A6NGU7 62 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 UBE2D1P51668 147 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 SEC11AP67812 179 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 ERASQ7Z444 233 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 ORAOV1Q8WV07 137 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 AMELXQ99217 191 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 KRTAP17-1Q9BYP8 105 aa12.32□□□□□ -0.44
SYNE4-202ENST00000340477 PLA2G1BP04054 148 aaKnown RBP12.31□□□□□ -0.44
SYNE4-202ENST00000340477 RAB5BP61020 215 aa12.31□□□□□ -0.44
SYNE4-202ENST00000340477 COX6A2Q02221 97 aa12.31□□□□□ -0.44
SYNE4-202ENST00000340477 LINC00242Q5T6M2 205 aa12.31□□□□□ -0.44
SYNE4-202ENST00000340477 C2orf48Q96LS8 159 aa12.31□□□□□ -0.44
SYNE4-202ENST00000340477 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.31□□□□□ -0.44
SYNE4-202ENST00000340477 CBLN2Q8IUK8 224 aa12.3□□□□□ -0.44
SYNE4-202ENST00000340477 C18orf32Q8TCD1 76 aa12.3□□□□□ -0.44
SYNE4-202ENST00000340477 A0A087WZ39 114 aa12.29□□□□□ -0.44
SYNE4-202ENST00000340477 F8WDY8 70 aa12.29□□□□□ -0.44
SYNE4-202ENST00000340477 LINC00173Q6ZV60 143 aa12.29□□□□□ -0.44
SYNE4-202ENST00000340477 IGKV2-24A0A0C4DH68 120 aa12.28□□□□□ -0.44
SYNE4-202ENST00000340477 LINC00614P0C842 121 aa12.28□□□□□ -0.44
SYNE4-202ENST00000340477 HERVK_113P63121 156 aa12.28□□□□□ -0.44
SYNE4-202ENST00000340477 ZC2HC1BQ5TFG8 222 aa12.28□□□□□ -0.44
SYNE4-202ENST00000340477 YPEL4Q96NS1 127 aa12.28□□□□□ -0.44
SYNE4-202ENST00000340477 GEMIN7Q9H840 131 aaKnown RBP12.28□□□□□ -0.44
SYNE4-202ENST00000340477 LINC00474Q9P2X8 69 aa12.28□□□□□ -0.44
SYNE4-202ENST00000340477 CHTF8P0CG12 524 aa12.27□□□□□ -0.45
SYNE4-202ENST00000340477 CIRBPQ14011 172 aaKnown RBP12.27□□□□□ -0.45
SYNE4-202ENST00000340477 SPACA4Q8TDM5 124 aa12.27□□□□□ -0.45
SYNE4-202ENST00000340477 NDUFA1O15239 70 aa12.26□□□□□ -0.45
SYNE4-202ENST00000340477 MAJINQ3KP22 176 aa12.26□□□□□ -0.45
SYNE4-202ENST00000340477 Q6ZRU5 148 aa12.26□□□□□ -0.45
SYNE4-202ENST00000340477 LINC01561Q8N1V8 128 aa12.26□□□□□ -0.45
SYNE4-202ENST00000340477 LOC107984640A0A0U1RRK4 108 aa12.25□□□□□ -0.45
SYNE4-202ENST00000340477 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.25□□□□□ -0.45
SYNE4-202ENST00000340477 PANO1I0J062 215 aa12.25□□□□□ -0.45
SYNE4-202ENST00000340477 HBDP02042 147 aa12.25□□□□□ -0.45
SYNE4-202ENST00000340477 INAFM2P0DMQ5 153 aa12.25□□□□□ -0.45
SYNE4-202ENST00000340477 FAM19A3Q7Z5A8 133 aa12.25□□□□□ -0.45
SYNE4-202ENST00000340477 PACRGQ96M98 296 aaPredicted RBP12.25□□□□□ -0.45
SYNE4-202ENST00000340477 PCLOQ9Y6V0 5065 aa12.24□□□□□ -0.45
SYNE4-202ENST00000340477 ABCA13Q86UQ4 5058 aa12.23□□□□□ -0.45
SYNE4-202ENST00000340477 A0A096LNI7 61 aa12.23□□□□□ -0.45
SYNE4-202ENST00000340477 PRSS2P07478 247 aa12.23□□□□□ -0.45
SYNE4-202ENST00000340477 A0A087WYN8 130 aa12.22□□□□□ -0.45
SYNE4-202ENST00000340477 PMVKQ15126 192 aa12.22□□□□□ -0.45
SYNE4-202ENST00000340477 RNF151Q2KHN1 245 aa12.22□□□□□ -0.45
SYNE4-202ENST00000340477 MRPL35Q9NZE8 188 aaKnown RBP12.22□□□□□ -0.45
SYNE4-202ENST00000340477 FAT1Q14517 4588 aa12.21□□□□□ -0.45
SYNE4-202ENST00000340477 RPL18AQ02543 176 aaKnown RBP12.21□□□□□ -0.45
SYNE4-202ENST00000340477 GAGE2BQ13066 116 aa12.21□□□□□ -0.45
SYNE4-202ENST00000340477 LINC00469Q8N7U9 141 aa12.21□□□□□ -0.45
SYNE4-202ENST00000340477 VPS13BQ7Z7G8 4022 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 A0A0J9YXV3 536 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 TINCRA0A1B0GVN0 87 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 ATP5LO75964 103 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 STPG4Q8N801 248 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 CHCHD1Q96BP2 118 aaKnown RBP12.2□□□□□ -0.46
SYNE4-202ENST00000340477 CST9LQ9H4G1 147 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 PLAC8Q9NZF1 115 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 TOMM7Q9P0U1 55 aa12.2□□□□□ -0.46
SYNE4-202ENST00000340477 PTTG1IPP53801 180 aa12.19□□□□□ -0.46
SYNE4-202ENST00000340477 NDUFA6P56556 154 aa12.19□□□□□ -0.46
SYNE4-202ENST00000340477 RPL37AP61513 92 aaKnown RBP12.19□□□□□ -0.46
SYNE4-202ENST00000340477 C7orf33Q8WU49 177 aa12.19□□□□□ -0.46
SYNE4-202ENST00000340477 URB1-AS1Q96HZ7 61 aa12.19□□□□□ -0.46
SYNE4-202ENST00000340477 CDKN2A-AS1Q9UH64 79 aa12.19□□□□□ -0.46
SYNE4-202ENST00000340477 CKS1BP61024 79 aa12.18□□□□□ -0.46
SYNE4-202ENST00000340477 PMCHL1Q16048 86 aa12.18□□□□□ -0.46
SYNE4-202ENST00000340477 BAGE3Q86Y29 109 aa12.18□□□□□ -0.46
SYNE4-202ENST00000340477 C6orf226Q5I0X4 101 aa12.17□□□□□ -0.46
SYNE4-202ENST00000340477 SRRM2Q9UQ35 2752 aaKnown RBP12.17□□□□□ -0.46
SYNE4-202ENST00000340477 A0A096LNJ9 63 aa12.16□□□□□ -0.46
SYNE4-202ENST00000340477 TRBV30A0A0K0K1B3 111 aa12.16□□□□□ -0.46
SYNE4-202ENST00000340477 H3BRM9 83 aa12.16□□□□□ -0.46
SYNE4-202ENST00000340477 TRGC2P03986 189 aa12.16□□□□□ -0.46
SYNE4-202ENST00000340477 KIAA0087Q14695 138 aa12.16□□□□□ -0.46
SYNE4-202ENST00000340477 UNQ6190/PRO20217Q6UXQ8 127 aa12.16□□□□□ -0.46
SYNE4-202ENST00000340477 Q8IZM0 81 aa12.16□□□□□ -0.46
SYNE4-202ENST00000340477 PDZD11Q5EBL8 140 aa12.15□□□□□ -0.46
SYNE4-202ENST00000340477 HSBP1O75506 76 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms