RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 OR10D4PQ8NGN7 298 aa11.07□□□□□ -0.64
HDDC3-201ENST00000330334 RAB5AP20339 215 aa11.06□□□□□ -0.64
HDDC3-201ENST00000330334 PLA2G2DQ9UNK4 145 aa11.06□□□□□ -0.64
HDDC3-201ENST00000330334 LAMTOR2Q9Y2Q5 125 aa11.06□□□□□ -0.64
HDDC3-201ENST00000330334 PYGO1Q9Y3Y4 419 aa11.06□□□□□ -0.64
HDDC3-201ENST00000330334 ANAPC16Q96DE5 110 aa11.05□□□□□ -0.64
HDDC3-201ENST00000330334 PRELID3AQ96N28 172 aa11.05□□□□□ -0.64
HDDC3-201ENST00000330334 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.04□□□□□ -0.64
HDDC3-201ENST00000330334 MT-ND4LP03901 98 aa11.04□□□□□ -0.64
HDDC3-201ENST00000330334 SPAG11BQ08648 103 aa11.04□□□□□ -0.64
HDDC3-201ENST00000330334 GAGE2BQ13066 116 aa11.04□□□□□ -0.64
HDDC3-201ENST00000330334 Q6ZRP5 223 aa11.04□□□□□ -0.64
HDDC3-201ENST00000330334 LINC01600Q96MT4 127 aa11.04□□□□□ -0.64
HDDC3-201ENST00000330334 OPRPNQ99935 248 aaPredicted RBP11.04□□□□□ -0.64
HDDC3-201ENST00000330334 RAB14P61106 215 aa11.03□□□□□ -0.64
HDDC3-201ENST00000330334 SPINK6Q6UWN8 80 aa11.03□□□□□ -0.64
HDDC3-201ENST00000330334 MRPL35Q9NZE8 188 aaKnown RBP11.03□□□□□ -0.64
HDDC3-201ENST00000330334 IFITM10A6NMD0 228 aa11.02□□□□□ -0.65
HDDC3-201ENST00000330334 IFI27P40305 119 aaPredicted RBP11.02□□□□□ -0.65
HDDC3-201ENST00000330334 SRSF9Q13242 221 aaKnown RBP eCLIP11.02□□□□□ -0.65
HDDC3-201ENST00000330334 TNXBP22105 4242 aa11.01□□□□□ -0.65
HDDC3-201ENST00000330334 A0A1W2PNN7 141 aa11.01□□□□□ -0.65
HDDC3-201ENST00000330334 ORAOV1Q8WV07 137 aa11□□□□□ -0.65
HDDC3-201ENST00000330334 IMMP2LQ96T52 175 aa11□□□□□ -0.65
HDDC3-201ENST00000330334 IGLV4-3A0A075B6K6 122 aa10.99□□□□□ -0.65
HDDC3-201ENST00000330334 A0A087WZ39 114 aa10.99□□□□□ -0.65
HDDC3-201ENST00000330334 K7EMI3 77 aa10.99□□□□□ -0.65
HDDC3-201ENST00000330334 C9orf116Q5BN46 136 aaPredicted RBP10.99□□□□□ -0.65
HDDC3-201ENST00000330334 MAP1LC3AQ9H492 121 aa10.99□□□□□ -0.65
HDDC3-201ENST00000330334 TGIF2-C20orf24A0A0A6YYL0 155 aa10.98□□□□□ -0.65
HDDC3-201ENST00000330334 NDUFA1O15239 70 aa10.98□□□□□ -0.65
HDDC3-201ENST00000330334 TLX1NBP0CAT3 122 aa10.98□□□□□ -0.65
HDDC3-201ENST00000330334 LINC00242Q5T6M2 205 aa10.98□□□□□ -0.65
HDDC3-201ENST00000330334 REG3GQ6UW15 175 aa10.98□□□□□ -0.65
HDDC3-201ENST00000330334 Q8N8P6 123 aa10.98□□□□□ -0.65
HDDC3-201ENST00000330334 TMEM141Q96I45 108 aa10.98□□□□□ -0.65
HDDC3-201ENST00000330334 NPSP0C0P6 89 aa10.97□□□□□ -0.65
HDDC3-201ENST00000330334 RPL18AQ02543 176 aaKnown RBP10.97□□□□□ -0.65
HDDC3-201ENST00000330334 LINC01561Q8N1V8 128 aa10.97□□□□□ -0.65
HDDC3-201ENST00000330334 A0A0J9YXV3 536 aa10.96□□□□□ -0.65
HDDC3-201ENST00000330334 LOC389332A0A1B0GUA5 103 aa10.96□□□□□ -0.65
HDDC3-201ENST00000330334 CLLU1Q5K131 121 aa10.96□□□□□ -0.65
HDDC3-201ENST00000330334 UBR4Q5T4S7 5183 aa10.95□□□□□ -0.66
HDDC3-201ENST00000330334 KIAA0087Q14695 138 aa10.95□□□□□ -0.66
HDDC3-201ENST00000330334 ORMDL2Q53FV1 153 aa10.95□□□□□ -0.66
HDDC3-201ENST00000330334 TEX43Q6ZNM6 134 aa10.95□□□□□ -0.66
HDDC3-201ENST00000330334 CYSLTR1Q9Y271 337 aa10.95□□□□□ -0.66
HDDC3-201ENST00000330334 UBE2D1P51668 147 aa10.94□□□□□ -0.66
HDDC3-201ENST00000330334 KRTAP10-8P60410 259 aa10.94□□□□□ -0.66
HDDC3-201ENST00000330334 C10orf25Q5T742 122 aa10.94□□□□□ -0.66
HDDC3-201ENST00000330334 C2orf66Q6UXQ4 117 aa10.94□□□□□ -0.66
HDDC3-201ENST00000330334 UNQ6190/PRO20217Q6UXQ8 127 aa10.94□□□□□ -0.66
HDDC3-201ENST00000330334 AMELXQ99217 191 aa10.94□□□□□ -0.66
HDDC3-201ENST00000330334 C2orf88Q9BSF0 95 aa10.94□□□□□ -0.66
HDDC3-201ENST00000330334 NXT2Q9NPJ8 142 aaKnown RBP10.93□□□□□ -0.66
HDDC3-201ENST00000330334 C6orf48Q9UBA6 75 aa10.93□□□□□ -0.66
HDDC3-201ENST00000330334 PSORS1C2Q9UIG4 136 aa10.93□□□□□ -0.66
HDDC3-201ENST00000330334 IGIPA6NJ69 53 aa10.92□□□□□ -0.66
HDDC3-201ENST00000330334 G0S2P27469 103 aa10.92□□□□□ -0.66
HDDC3-201ENST00000330334 Q6ZN92 141 aa10.92□□□□□ -0.66
HDDC3-201ENST00000330334 CTDSP1Q9GZU7 261 aa10.92□□□□□ -0.66
HDDC3-201ENST00000330334 VCX2Q9H322 139 aa10.92□□□□□ -0.66
HDDC3-201ENST00000330334 TRBV30A0A0K0K1B3 111 aa10.91□□□□□ -0.66
HDDC3-201ENST00000330334 MT-ND6P03923 174 aa10.91□□□□□ -0.66
HDDC3-201ENST00000330334 UQCC3Q6UW78 93 aa10.91□□□□□ -0.66
HDDC3-201ENST00000330334 LINC00173Q6ZV60 143 aa10.91□□□□□ -0.66
HDDC3-201ENST00000330334 FAM19A3Q7Z5A8 133 aa10.91□□□□□ -0.66
HDDC3-201ENST00000330334 PHF5AQ7RTV0 110 aaKnown RBP10.9□□□□□ -0.66
HDDC3-201ENST00000330334 TRAV9-1A0A075B6T8 112 aa10.89□□□□□ -0.67
HDDC3-201ENST00000330334 PAPPA-AS1Q5QFB9 102 aa10.89□□□□□ -0.67
HDDC3-201ENST00000330334 TMEM218A2RU14 115 aa10.88□□□□□ -0.67
HDDC3-201ENST00000330334 NDUFC2-KCTD14E9PQ53 114 aa10.87□□□□□ -0.67
HDDC3-201ENST00000330334 SEC11AP67812 179 aa10.87□□□□□ -0.67
HDDC3-201ENST00000330334 C1orf137Q5JT78 98 aa10.87□□□□□ -0.67
HDDC3-201ENST00000330334 PACRGQ96M98 296 aaPredicted RBP10.87□□□□□ -0.67
HDDC3-201ENST00000330334 FAM168BA1KXE4 195 aa10.86□□□□□ -0.67
HDDC3-201ENST00000330334 ADCYAP1P18509 176 aa10.86□□□□□ -0.67
HDDC3-201ENST00000330334 GAGE2EQ4V326 116 aa10.86□□□□□ -0.67
HDDC3-201ENST00000330334 ZC2HC1BQ5TFG8 222 aa10.86□□□□□ -0.67
HDDC3-201ENST00000330334 C2orf82Q6UX34 121 aa10.86□□□□□ -0.67
HDDC3-201ENST00000330334 TIMM17AQ99595 171 aa10.86□□□□□ -0.67
HDDC3-201ENST00000330334 GAGE2DQ9UEU5 116 aa10.86□□□□□ -0.67
HDDC3-201ENST00000330334 HERVK_113P63121 156 aa10.85□□□□□ -0.67
HDDC3-201ENST00000330334 TOMM6Q96B49 74 aa10.85□□□□□ -0.67
HDDC3-201ENST00000330334 IGLV7-43P04211 117 aa10.84□□□□□ -0.67
HDDC3-201ENST00000330334 KRTAP7-1Q8IUC3 87 aa10.84□□□□□ -0.67
HDDC3-201ENST00000330334 Q8IZM0 81 aa10.84□□□□□ -0.67
HDDC3-201ENST00000330334 SEC11CQ9BY50 192 aa10.84□□□□□ -0.67
HDDC3-201ENST00000330334 LINC01549A6NIU2 74 aa10.83□□□□□ -0.68
HDDC3-201ENST00000330334 PRSS2P07478 247 aa10.83□□□□□ -0.68
HDDC3-201ENST00000330334 IFITM2Q01629 132 aa10.83□□□□□ -0.68
HDDC3-201ENST00000330334 C6orf226Q5I0X4 101 aa10.83□□□□□ -0.68
HDDC3-201ENST00000330334 ERASQ7Z444 233 aa10.83□□□□□ -0.68
HDDC3-201ENST00000330334 GNB1LQ9BYB4 327 aa10.83□□□□□ -0.68
HDDC3-201ENST00000330334 LINC01546A6NGU7 62 aa10.82□□□□□ -0.68
HDDC3-201ENST00000330334 CKS1BP61024 79 aa10.82□□□□□ -0.68
HDDC3-201ENST00000330334 ODF1Q14990 250 aa10.82□□□□□ -0.68
HDDC3-201ENST00000330334 KIAA1644Q3SXP7 199 aa10.82□□□□□ -0.68
HDDC3-201ENST00000330334 FAM19A5Q7Z5A7 132 aaPredicted RBP10.82□□□□□ -0.68
HDDC3-201ENST00000330334 DIRC1Q969H9 104 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms