RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 TEX49A0A1B0GTD5 131 aa14.16□□□□□ -0.14
SOX2-201ENST00000325404 Q6ZTI0 123 aa14.16□□□□□ -0.14
SOX2-201ENST00000325404 ZNF625Q96I27 306 aaPredicted RBP14.16□□□□□ -0.14
SOX2-201ENST00000325404 FAM110AQ9BQ89 295 aa14.16□□□□□ -0.14
SOX2-201ENST00000325404 SETD2Q9BYW2 2564 aaPredicted RBP14.16□□□□□ -0.14
SOX2-201ENST00000325404 TRAV8-4A0A0B4J246 113 aa14.15□□□□□ -0.14
SOX2-201ENST00000325404 F5H768 121 aa14.15□□□□□ -0.14
SOX2-201ENST00000325404 OTOGQ6ZRI0 2925 aa14.15□□□□□ -0.14
SOX2-201ENST00000325404 NDUFA7O95182 113 aa14.14□□□□□ -0.15
SOX2-201ENST00000325404 MRPL23Q16540 153 aaKnown RBP14.14□□□□□ -0.15
SOX2-201ENST00000325404 FAM240AA0A1B0GVK7 77 aa14.13□□□□□ -0.15
SOX2-201ENST00000325404 Q6Q795 121 aa14.13□□□□□ -0.15
SOX2-201ENST00000325404 DAND5Q8N907 189 aa14.13□□□□□ -0.15
SOX2-201ENST00000325404 CLEC2BQ92478 149 aa14.13□□□□□ -0.15
SOX2-201ENST00000325404 TRAV26-1A0A087WT03 109 aa14.13□□□□□ -0.15
SOX2-201ENST00000325404 C16orf74Q96GX8 76 aa14.13□□□□□ -0.15
SOX2-201ENST00000325404 CUBNO60494 3623 aa14.13□□□□□ -0.15
SOX2-201ENST00000325404 SHISA2Q6UWI4 295 aa14.12□□□□□ -0.15
SOX2-201ENST00000325404 SNCGO76070 127 aa14.12□□□□□ -0.15
SOX2-201ENST00000325404 TMEM243Q9BU79 118 aa14.12□□□□□ -0.15
SOX2-201ENST00000325404 TRAV13-1A0A0B4J241 112 aa14.11□□□□□ -0.15
SOX2-201ENST00000325404 COX7A2LO14548 114 aa14.11□□□□□ -0.15
SOX2-201ENST00000325404 TRBV6-4A0A1B0GX49 114 aa14.1□□□□□ -0.15
SOX2-201ENST00000325404 GAGE12JA6NER3 117 aa14.1□□□□□ -0.15
SOX2-201ENST00000325404 GIG44P09565 113 aaPredicted RBP14.1□□□□□ -0.15
SOX2-201ENST00000325404 GAGE4Q13068 117 aa14.1□□□□□ -0.15
SOX2-201ENST00000325404 GAGE5Q13069 117 aa14.1□□□□□ -0.15
SOX2-201ENST00000325404 PRIMA1Q86XR5 153 aa14.1□□□□□ -0.15
SOX2-201ENST00000325404 OVOL2Q9BRP0 275 aa14.1□□□□□ -0.15
SOX2-201ENST00000325404 NOP10Q9NPE3 64 aaKnown RBP14.1□□□□□ -0.15
SOX2-201ENST00000325404 PLAC8L1A1L4L8 177 aa14.09□□□□□ -0.15
SOX2-201ENST00000325404 INAFM1C9JVW0 142 aa14.09□□□□□ -0.15
SOX2-201ENST00000325404 UBE2L6O14933 153 aa14.09□□□□□ -0.15
SOX2-201ENST00000325404 GAGE2BQ13066 116 aa14.09□□□□□ -0.15
SOX2-201ENST00000325404 GAGE2EQ4V326 116 aa14.09□□□□□ -0.15
SOX2-201ENST00000325404 GAGE2DQ9UEU5 116 aa14.09□□□□□ -0.15
SOX2-201ENST00000325404 SOSTDC1Q6X4U4 206 aa14.08□□□□□ -0.15
SOX2-201ENST00000325404 MEIG1Q5JSS6 88 aa14.07□□□□□ -0.16
SOX2-201ENST00000325404 WNK1Q9H4A3 2382 aa14.07□□□□□ -0.16
SOX2-201ENST00000325404 PF4P02776 101 aa14.06□□□□□ -0.16
SOX2-201ENST00000325404 IGLV1-51P01701 117 aa14.05□□□□□ -0.16
SOX2-201ENST00000325404 TRACP01848 142 aa14.05□□□□□ -0.16
SOX2-201ENST00000325404 ANAPC13Q9BS18 74 aa14.05□□□□□ -0.16
SOX2-201ENST00000325404 SETXQ7Z333 2677 aaKnown RBP14.04□□□□□ -0.16
SOX2-201ENST00000325404 FAM222AQ5U5X8 452 aa14.04□□□□□ -0.16
SOX2-201ENST00000325404 C19orf73Q9NVV2 129 aa14.04□□□□□ -0.16
SOX2-201ENST00000325404 CSNK1G2-AS1Q8NCQ2 148 aa14.04□□□□□ -0.16
SOX2-201ENST00000325404 NSD1Q96L73 2696 aaPredicted RBP14.03□□□□□ -0.16
SOX2-201ENST00000325404 TRGV2A0A075B6R0 118 aa14.03□□□□□ -0.16
SOX2-201ENST00000325404 C15orf53Q8NAA6 179 aa14.03□□□□□ -0.16
SOX2-201ENST00000325404 CRLF1O75462 422 aa14.03□□□□□ -0.16
SOX2-201ENST00000325404 ACYP1P07311 99 aa14.02□□□□□ -0.16
SOX2-201ENST00000325404 GAGE7O76087 117 aa14.02□□□□□ -0.17
SOX2-201ENST00000325404 GAGE12FP0CL80 117 aa14.02□□□□□ -0.17
SOX2-201ENST00000325404 GAGE12GP0CL81 117 aa14.02□□□□□ -0.17
SOX2-201ENST00000325404 GAGE12IP0CL82 117 aa14.02□□□□□ -0.17
SOX2-201ENST00000325404 TRAV13-2A0A0B4J235 113 aa14.01□□□□□ -0.17
SOX2-201ENST00000325404 COX7B2Q8TF08 81 aa14.01□□□□□ -0.17
SOX2-201ENST00000325404 A0A0U1RRA0 63 aa14.01□□□□□ -0.17
SOX2-201ENST00000325404 HIVEP1P15822 2718 aa14.01□□□□□ -0.17
SOX2-201ENST00000325404 FN1P02751 2386 aaKnown RBP13.99□□□□□ -0.17
SOX2-201ENST00000325404 NDUFV3P56181 108 aaKnown RBP13.99□□□□□ -0.17
SOX2-201ENST00000325404 TRGV4A0A0C4DH28 118 aa13.99□□□□□ -0.17
SOX2-201ENST00000325404 TRBV6-8A0A0A6YYG3 113 aa13.98□□□□□ -0.17
SOX2-201ENST00000325404 RPL28P46779 137 aaKnown RBP13.98□□□□□ -0.17
SOX2-201ENST00000325404 FHL2Q14192 279 aa13.98□□□□□ -0.17
SOX2-201ENST00000325404 TTC32Q5I0X7 151 aa13.98□□□□□ -0.17
SOX2-201ENST00000325404 NHLRC4P0CG21 123 aaPredicted RBP13.97□□□□□ -0.17
SOX2-201ENST00000325404 C2CD3Q4AC94 2353 aa13.97□□□□□ -0.17
SOX2-201ENST00000325404 LOC100131303A0A0U1RQF7 123 aa13.97□□□□□ -0.17
SOX2-201ENST00000325404 RPL35AP18077 110 aaKnown RBP13.96□□□□□ -0.17
SOX2-201ENST00000325404 IGHV3OR16-9A0A0B4J2B5 98 aa13.96□□□□□ -0.18
SOX2-201ENST00000325404 KRTAP10-3P60369 221 aa13.96□□□□□ -0.18
SOX2-201ENST00000325404 A0A087WZ39 114 aa13.94□□□□□ -0.18
SOX2-201ENST00000325404 GAGE6Q13070 117 aa13.94□□□□□ -0.18
SOX2-201ENST00000325404 FLNBO75369 2602 aaKnown RBP13.94□□□□□ -0.18
SOX2-201ENST00000325404 TRBV7-7A0A0K0K1E9 115 aa13.94□□□□□ -0.18
SOX2-201ENST00000325404 IBA57-AS1B1ANH7 110 aa13.94□□□□□ -0.18
SOX2-201ENST00000325404 CRPP02741 224 aa13.94□□□□□ -0.18
SOX2-201ENST00000325404 WFDC10AQ9H1F0 79 aa13.94□□□□□ -0.18
SOX2-201ENST00000325404 MIR7-3HGQ8N6C7 128 aa13.93□□□□□ -0.18
SOX2-201ENST00000325404 KIR2DL5BQ8NHK3 375 aa13.93□□□□□ -0.18
SOX2-201ENST00000325404 BAALC-AS2P0C853 105 aa13.92□□□□□ -0.18
SOX2-201ENST00000325404 IGLV4-60A0A075B6I1 120 aa13.92□□□□□ -0.18
SOX2-201ENST00000325404 LINC00612Q8N6U2 182 aa13.92□□□□□ -0.18
SOX2-201ENST00000325404 SND1-IT1Q9HBX3 110 aa13.91□□□□□ -0.18
SOX2-201ENST00000325404 BAHCC1Q9P281 2608 aa13.91□□□□□ -0.18
SOX2-201ENST00000325404 CHCHD5Q9BSY4 110 aa13.91□□□□□ -0.18
SOX2-201ENST00000325404 IMUPQ9GZP8 106 aa13.91□□□□□ -0.18
SOX2-201ENST00000325404 IGKV2-28A0A075B6P5 120 aa13.9□□□□□ -0.18
SOX2-201ENST00000325404 IGKV2D-28P01615 120 aa13.9□□□□□ -0.18
SOX2-201ENST00000325404 LINC00337Q8N6G1 96 aa13.89□□□□□ -0.19
SOX2-201ENST00000325404 FAM218AQ96MZ4 157 aa13.89□□□□□ -0.19
SOX2-201ENST00000325404 SDIM1Q6ZPB5 146 aa13.89□□□□□ -0.19
SOX2-201ENST00000325404 INAFM2P0DMQ5 153 aa13.88□□□□□ -0.19
SOX2-201ENST00000325404 C22orf24Q9Y442 160 aa13.88□□□□□ -0.19
SOX2-201ENST00000325404 H0YGX0 51 aa13.88□□□□□ -0.19
SOX2-201ENST00000325404 LINC00158P58513 81 aa13.88□□□□□ -0.19
SOX2-201ENST00000325404 TOMM7Q9P0U1 55 aa13.88□□□□□ -0.19
SOX2-201ENST00000325404 LINC01561Q8N1V8 128 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms