RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 F5H768 121 aa15.63■□□□□ 0.09
SHMT1-201ENST00000316694 HIST2H2BCQ6DN03 193 aa15.62■□□□□ 0.09
SHMT1-201ENST00000316694 TMEM86BQ8N661 226 aa15.62■□□□□ 0.09
SHMT1-201ENST00000316694 COPS9Q8WXC6 57 aa15.62■□□□□ 0.09
SHMT1-201ENST00000316694 WFDC10AQ9H1F0 79 aa15.62■□□□□ 0.09
SHMT1-201ENST00000316694 TRGV2A0A075B6R0 118 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 GAGE7O76087 117 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 GAGE12FP0CL80 117 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 GAGE12GP0CL81 117 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 GAGE12IP0CL82 117 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 ESM1Q9NQ30 184 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 ACANP16112 2415 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 LOC100131303A0A0U1RQF7 123 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 TMEM243Q9BU79 118 aa15.61■□□□□ 0.09
SHMT1-201ENST00000316694 TTC32Q5I0X7 151 aa15.6■□□□□ 0.09
SHMT1-201ENST00000316694 COX7A2LO14548 114 aa15.6■□□□□ 0.09
SHMT1-201ENST00000316694 RPL35AP18077 110 aaKnown RBP15.59■□□□□ 0.09
SHMT1-201ENST00000316694 TENM4Q6N022 2769 aa15.59■□□□□ 0.09
SHMT1-201ENST00000316694 GIG44P09565 113 aaPredicted RBP15.58■□□□□ 0.09
SHMT1-201ENST00000316694 NDUFV3P56181 108 aaKnown RBP15.58■□□□□ 0.09
SHMT1-201ENST00000316694 IGKV3OR2-268A0A0C4DH90 116 aa15.58■□□□□ 0.08
SHMT1-201ENST00000316694 NHLRC4P0CG21 123 aaPredicted RBP15.57■□□□□ 0.08
SHMT1-201ENST00000316694 HERV-K104P63124 156 aa15.57■□□□□ 0.08
SHMT1-201ENST00000316694 SHISA2Q6UWI4 295 aa15.57■□□□□ 0.08
SHMT1-201ENST00000316694 DEFB121Q5J5C9 76 aa15.56■□□□□ 0.08
SHMT1-201ENST00000316694 MTORP42345 2549 aa15.56■□□□□ 0.08
SHMT1-201ENST00000316694 PLAC8L1A1L4L8 177 aa15.55■□□□□ 0.08
SHMT1-201ENST00000316694 PLA2G2AP14555 144 aa15.55■□□□□ 0.08
SHMT1-201ENST00000316694 C16orf74Q96GX8 76 aa15.55■□□□□ 0.08
SHMT1-201ENST00000316694 TOMM7Q9P0U1 55 aa15.55■□□□□ 0.08
SHMT1-201ENST00000316694 GAGE6Q13070 117 aa15.54■□□□□ 0.08
SHMT1-201ENST00000316694 TRGV4A0A0C4DH28 118 aa15.54■□□□□ 0.08
SHMT1-201ENST00000316694 FAM240AA0A1B0GVK7 77 aa15.53■□□□□ 0.08
SHMT1-201ENST00000316694 Q6Q795 121 aa15.53■□□□□ 0.08
SHMT1-201ENST00000316694 COX7B2Q8TF08 81 aa15.52■□□□□ 0.07
SHMT1-201ENST00000316694 TRBV6-4A0A1B0GX49 114 aa15.5■□□□□ 0.07
SHMT1-201ENST00000316694 PDZD2O15018 2839 aa15.5■□□□□ 0.07
SHMT1-201ENST00000316694 MIR7-3HGQ8N6C7 128 aa15.5■□□□□ 0.07
SHMT1-201ENST00000316694 FAM218AQ96MZ4 157 aa15.5■□□□□ 0.07
SHMT1-201ENST00000316694 ITPR2Q14571 2701 aa15.49■□□□□ 0.07
SHMT1-201ENST00000316694 IGLV4-60A0A075B6I1 120 aa15.49■□□□□ 0.07
SHMT1-201ENST00000316694 MRPL23Q16540 153 aaKnown RBP15.49■□□□□ 0.07
SHMT1-201ENST00000316694 B5MCH6 92 aa15.48■□□□□ 0.07
SHMT1-201ENST00000316694 BAALC-AS2P0C853 105 aa15.48■□□□□ 0.07
SHMT1-201ENST00000316694 CMC4P56277 68 aaPredicted RBP15.48■□□□□ 0.07
SHMT1-201ENST00000316694 LINC01006Q8NI28 216 aa15.48■□□□□ 0.07
SHMT1-201ENST00000316694 CHCHD5Q9BSY4 110 aa15.48■□□□□ 0.07
SHMT1-201ENST00000316694 TRACP01848 142 aa15.47■□□□□ 0.07
SHMT1-201ENST00000316694 CRPP02741 224 aa15.47■□□□□ 0.07
SHMT1-201ENST00000316694 LINC00158P58513 81 aa15.45■□□□□ 0.06
SHMT1-201ENST00000316694 CSNK1G2-AS1Q8NCQ2 148 aa15.45■□□□□ 0.06
SHMT1-201ENST00000316694 SND1-IT1Q9HBX3 110 aa15.45■□□□□ 0.06
SHMT1-201ENST00000316694 C19orf73Q9NVV2 129 aa15.45■□□□□ 0.06
SHMT1-201ENST00000316694 TRBV6-8A0A0A6YYG3 113 aa15.45■□□□□ 0.06
SHMT1-201ENST00000316694 TRAV13-2A0A0B4J235 113 aa15.45■□□□□ 0.06
SHMT1-201ENST00000316694 LINC00337Q8N6G1 96 aa15.45■□□□□ 0.06
SHMT1-201ENST00000316694 ANK3Q12955 4377 aaKnown RBP15.45■□□□□ 0.06
SHMT1-201ENST00000316694 IGLV1-51P01701 117 aa15.44■□□□□ 0.06
SHMT1-201ENST00000316694 OVOL2Q9BRP0 275 aa15.44■□□□□ 0.06
SHMT1-201ENST00000316694 CCDC179H3BU77 68 aa15.44■□□□□ 0.06
SHMT1-201ENST00000316694 KRTAP1-1Q07627 177 aa15.44■□□□□ 0.06
SHMT1-201ENST00000316694 FHL2Q14192 279 aa15.44■□□□□ 0.06
SHMT1-201ENST00000316694 Q9HAA7 133 aa15.44■□□□□ 0.06
SHMT1-201ENST00000316694 SS18L2Q9UHA2 77 aa15.44■□□□□ 0.06
SHMT1-201ENST00000316694 IGKV2-28A0A075B6P5 120 aa15.42■□□□□ 0.06
SHMT1-201ENST00000316694 IGKV2D-28P01615 120 aa15.42■□□□□ 0.06
SHMT1-201ENST00000316694 C5orf38Q86SI9 138 aa15.42■□□□□ 0.06
SHMT1-201ENST00000316694 PPDPFQ9H3Y8 114 aa15.42■□□□□ 0.06
SHMT1-201ENST00000316694 PF4P02776 101 aa15.41■□□□□ 0.06
SHMT1-201ENST00000316694 RPL28P46779 137 aaKnown RBP15.41■□□□□ 0.06
SHMT1-201ENST00000316694 IGHV3OR16-9A0A0B4J2B5 98 aa15.41■□□□□ 0.06
SHMT1-201ENST00000316694 ACYP1P07311 99 aa15.41■□□□□ 0.06
SHMT1-201ENST00000316694 DEFB130BP0DP73 79 aa15.4■□□□□ 0.06
SHMT1-201ENST00000316694 DEFB130AP0DP74 79 aa15.4■□□□□ 0.06
SHMT1-201ENST00000316694 FN1P02751 2386 aaKnown RBP15.4■□□□□ 0.06
SHMT1-201ENST00000316694 PFN2P35080 140 aa15.4■□□□□ 0.06
SHMT1-201ENST00000316694 FAM222AQ5U5X8 452 aa15.4■□□□□ 0.06
SHMT1-201ENST00000316694 C22orf24Q9Y442 160 aa15.4■□□□□ 0.06
SHMT1-201ENST00000316694 FAM110AQ9BQ89 295 aa15.39■□□□□ 0.05
SHMT1-201ENST00000316694 CCL18P55774 89 aa15.38■□□□□ 0.05
SHMT1-201ENST00000316694 C11orf68Q9H3H3 251 aaKnown RBP15.38■□□□□ 0.05
SHMT1-201ENST00000316694 TRBV7-7A0A0K0K1E9 115 aa15.38■□□□□ 0.05
SHMT1-201ENST00000316694 SMCR5Q8TEV8 140 aa15.38■□□□□ 0.05
SHMT1-201ENST00000316694 SMIM11BQ8TCY0 68 aa15.37■□□□□ 0.05
SHMT1-201ENST00000316694 A0A087WZ39 114 aa15.37■□□□□ 0.05
SHMT1-201ENST00000316694 RNASE1P07998 156 aaKnown RBP15.36■□□□□ 0.05
SHMT1-201ENST00000316694 GCN1Q92616 2671 aaKnown RBP15.35■□□□□ 0.05
SHMT1-201ENST00000316694 MALP21145 153 aa15.35■□□□□ 0.05
SHMT1-201ENST00000316694 C16orf95Q9H693 158 aa15.35■□□□□ 0.05
SHMT1-201ENST00000316694 A0A087WYN8 130 aa15.35■□□□□ 0.05
SHMT1-201ENST00000316694 IBA57-AS1B1ANH7 110 aa15.34■□□□□ 0.05
SHMT1-201ENST00000316694 DNAL4O96015 105 aa15.34■□□□□ 0.05
SHMT1-201ENST00000316694 LINC00959A0A1B0GUT2 108 aa15.34■□□□□ 0.05
SHMT1-201ENST00000316694 PAX4O43316 350 aa15.33■□□□□ 0.04
SHMT1-201ENST00000316694 GAGE2AQ6NT46 116 aa15.33■□□□□ 0.04
SHMT1-201ENST00000316694 XCL1P47992 114 aa15.32■□□□□ 0.04
SHMT1-201ENST00000316694 C6orf226Q5I0X4 101 aa15.32■□□□□ 0.04
SHMT1-201ENST00000316694 INAFM2P0DMQ5 153 aa15.32■□□□□ 0.04
SHMT1-201ENST00000316694 GYPEP15421 78 aa15.32■□□□□ 0.04
SHMT1-201ENST00000316694 HELZ2Q9BYK8 2649 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms