RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LINC00269Q8N2A0 174 aa14.07□□□□□ -0.16
USP48-201ENST00000308271 PTPRBP23467 1997 aa14.06□□□□□ -0.16
USP48-201ENST00000308271 IGHV4-28A0A0C4DH34 117 aa14.06□□□□□ -0.16
USP48-201ENST00000308271 ABCA12Q86UK0 2595 aa14.06□□□□□ -0.16
USP48-201ENST00000308271 PRM2P04554 102 aa14.06□□□□□ -0.16
USP48-201ENST00000308271 C9orf66Q5T8R8 295 aa14.06□□□□□ -0.16
USP48-201ENST00000308271 REG3AQ06141 175 aa14.05□□□□□ -0.16
USP48-201ENST00000308271 CHCHD10Q8WYQ3 142 aaPredicted RBP14.05□□□□□ -0.16
USP48-201ENST00000308271 PRRC2AP48634 2157 aaKnown RBP14.05□□□□□ -0.16
USP48-201ENST00000308271 CCL18P55774 89 aa14.05□□□□□ -0.16
USP48-201ENST00000308271 PRORYQ9H606 182 aa14.05□□□□□ -0.16
USP48-201ENST00000308271 TRBV7-7A0A0K0K1E9 115 aa14.03□□□□□ -0.16
USP48-201ENST00000308271 SBSPONQ8IVN8 264 aa14.03□□□□□ -0.16
USP48-201ENST00000308271 EDN2P20800 178 aa14.03□□□□□ -0.16
USP48-201ENST00000308271 UBE2BP63146 152 aa14.03□□□□□ -0.16
USP48-201ENST00000308271 BPY2O14599 106 aa14.02□□□□□ -0.16
USP48-201ENST00000308271 MP68P56378 58 aa14.02□□□□□ -0.16
USP48-201ENST00000308271 UBE2DNLQ8IWF7 75 aa14.02□□□□□ -0.16
USP48-201ENST00000308271 BRK1Q8WUW1 75 aa14.01□□□□□ -0.17
USP48-201ENST00000308271 NDUFC1O43677 76 aa14□□□□□ -0.17
USP48-201ENST00000308271 LINC00315P59091 139 aa14□□□□□ -0.17
USP48-201ENST00000308271 CDSNQ15517 529 aa14□□□□□ -0.17
USP48-201ENST00000308271 ZNF702PQ9H963 129 aa14□□□□□ -0.17
USP48-201ENST00000308271 DEFB135Q30KP9 77 aa14□□□□□ -0.17
USP48-201ENST00000308271 CSDC2Q9Y534 153 aaKnown RBP14□□□□□ -0.17
USP48-201ENST00000308271 COX6A2Q02221 97 aa13.99□□□□□ -0.17
USP48-201ENST00000308271 LINC00959A0A1B0GUT2 108 aa13.99□□□□□ -0.17
USP48-201ENST00000308271 CCKP06307 115 aa13.98□□□□□ -0.17
USP48-201ENST00000308271 SMIM9A6NGZ8 99 aa13.98□□□□□ -0.17
USP48-201ENST00000308271 NDUFC2-KCTD14E9PQ53 114 aa13.97□□□□□ -0.17
USP48-201ENST00000308271 DEFB4AO15263 64 aa13.97□□□□□ -0.17
USP48-201ENST00000308271 ATP5EP56381 51 aaPredicted RBP13.97□□□□□ -0.17
USP48-201ENST00000308271 DNAJC9-AS1A6NH13 148 aa13.97□□□□□ -0.17
USP48-201ENST00000308271 CD164L2Q6UWJ8 174 aa13.96□□□□□ -0.17
USP48-201ENST00000308271 WFDC9Q8NEX5 89 aa13.96□□□□□ -0.17
USP48-201ENST00000308271 SCXQ7RTU7 201 aa13.96□□□□□ -0.18
USP48-201ENST00000308271 LYRM9A8MSI8 78 aa13.95□□□□□ -0.18
USP48-201ENST00000308271 IGHV4-31P0DP07 118 aa13.95□□□□□ -0.18
USP48-201ENST00000308271 Q6ZQY7 126 aa13.95□□□□□ -0.18
USP48-201ENST00000308271 Q8IZM0 81 aa13.95□□□□□ -0.18
USP48-201ENST00000308271 LOC100131303A0A0U1RQF7 123 aa13.94□□□□□ -0.18
USP48-201ENST00000308271 PCNTO95613 3336 aa13.94□□□□□ -0.18
USP48-201ENST00000308271 A0A087WVE0 104 aa13.93□□□□□ -0.18
USP48-201ENST00000308271 COX17Q14061 63 aa13.93□□□□□ -0.18
USP48-201ENST00000308271 FAM19A4Q96LR4 140 aa13.93□□□□□ -0.18
USP48-201ENST00000308271 BEAN1Q3B7T3 259 aa13.92□□□□□ -0.18
USP48-201ENST00000308271 A0A087WYN8 130 aa13.91□□□□□ -0.18
USP48-201ENST00000308271 KLK5Q9Y337 293 aaPredicted RBP13.91□□□□□ -0.18
USP48-201ENST00000308271 C18orf65Q6ZTR6 163 aa13.91□□□□□ -0.18
USP48-201ENST00000308271 A0A087WZ39 114 aa13.9□□□□□ -0.18
USP48-201ENST00000308271 DEFB121Q5J5C9 76 aa13.9□□□□□ -0.18
USP48-201ENST00000308271 FAM19A5Q7Z5A7 132 aaPredicted RBP13.9□□□□□ -0.18
USP48-201ENST00000308271 MUC7Q8TAX7 377 aa13.9□□□□□ -0.18
USP48-201ENST00000308271 SNURFQ9Y675 71 aa13.9□□□□□ -0.18
USP48-201ENST00000308271 XAGE1AQ9HD64 81 aa13.89□□□□□ -0.19
USP48-201ENST00000308271 AVPP01185 164 aa13.89□□□□□ -0.19
USP48-201ENST00000308271 TRAV7A0A075B6U4 112 aa13.89□□□□□ -0.19
USP48-201ENST00000308271 Q6ZSN1 163 aa13.89□□□□□ -0.19
USP48-201ENST00000308271 NTM-AS1Q6ZSK4 140 aa13.88□□□□□ -0.19
USP48-201ENST00000308271 Q8N814 137 aa13.88□□□□□ -0.19
USP48-201ENST00000308271 MPLKIPQ8TAP9 179 aa13.88□□□□□ -0.19
USP48-201ENST00000308271 MTORP42345 2549 aa13.88□□□□□ -0.19
USP48-201ENST00000308271 ODF3L2Q3SX64 289 aa13.88□□□□□ -0.19
USP48-201ENST00000308271 WFDC11Q8NEX6 87 aa13.88□□□□□ -0.19
USP48-201ENST00000308271 A0A1W2PPR1 153 aa13.87□□□□□ -0.19
USP48-201ENST00000308271 IGLV5-39A0A0G2JS06 123 aa13.86□□□□□ -0.19
USP48-201ENST00000308271 FN1P02751 2386 aaKnown RBP13.86□□□□□ -0.19
USP48-201ENST00000308271 BBC3Q96PG8 261 aaPredicted RBP13.86□□□□□ -0.19
USP48-201ENST00000308271 SMIM26A0A096LP01 95 aa13.85□□□□□ -0.19
USP48-201ENST00000308271 PRB2P02812 416 aaPredicted RBP13.85□□□□□ -0.19
USP48-201ENST00000308271 LINC00846Q9NV44 126 aa13.85□□□□□ -0.19
USP48-201ENST00000308271 HRCT1Q6UXD1 115 aa13.84□□□□□ -0.19
USP48-201ENST00000308271 FAM19A3Q7Z5A8 133 aa13.84□□□□□ -0.19
USP48-201ENST00000308271 SERP1Q9Y6X1 66 aa13.83□□□□□ -0.19
USP48-201ENST00000308271 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.83□□□□□ -0.2
USP48-201ENST00000308271 NDUFB1O75438 58 aa13.83□□□□□ -0.2
USP48-201ENST00000308271 C1orf158Q8N1D5 194 aa13.83□□□□□ -0.2
USP48-201ENST00000308271 PPDPFQ9H3Y8 114 aa13.82□□□□□ -0.2
USP48-201ENST00000308271 LINC00337Q8N6G1 96 aa13.82□□□□□ -0.2
USP48-201ENST00000308271 PKD1L2Q7Z442 2459 aa13.81□□□□□ -0.2
USP48-201ENST00000308271 IGLV4-60A0A075B6I1 120 aa13.81□□□□□ -0.2
USP48-201ENST00000308271 LOC107984640A0A0U1RRK4 108 aa13.81□□□□□ -0.2
USP48-201ENST00000308271 SHISA2Q6UWI4 295 aa13.81□□□□□ -0.2
USP48-201ENST00000308271 PKIGQ9Y2B9 76 aa13.81□□□□□ -0.2
USP48-201ENST00000308271 WFDC10AQ9H1F0 79 aa13.8□□□□□ -0.2
USP48-201ENST00000308271 CRYGAP11844 174 aa13.79□□□□□ -0.2
USP48-201ENST00000308271 IGLV5-45A0A087WSX0 123 aa13.78□□□□□ -0.2
USP48-201ENST00000308271 ZNF73O43830 326 aaPredicted RBP13.78□□□□□ -0.2
USP48-201ENST00000308271 Q8N2B8 174 aa13.78□□□□□ -0.2
USP48-201ENST00000308271 MIFP14174 115 aa13.78□□□□□ -0.2
USP48-201ENST00000308271 KLK9Q2XQG4 91 aa13.78□□□□□ -0.2
USP48-201ENST00000308271 M0R378 163 aa13.78□□□□□ -0.2
USP48-201ENST00000308271 NDUFS5O43920 106 aa13.78□□□□□ -0.2
USP48-201ENST00000308271 PCSK5Q92824 1860 aa13.77□□□□□ -0.2
USP48-201ENST00000308271 PRRC2CQ9Y520 2896 aaKnown RBP13.77□□□□□ -0.21
USP48-201ENST00000308271 A0A0U1RQV1 116 aa13.76□□□□□ -0.21
USP48-201ENST00000308271 C3orf84H3BNL1 204 aa13.76□□□□□ -0.21
USP48-201ENST00000308271 LELP1Q5T871 98 aa13.74□□□□□ -0.21
USP48-201ENST00000308271 ZNF843Q8N446 348 aa13.74□□□□□ -0.21
USP48-201ENST00000308271 PRR3P79522 188 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 1520 ms