RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 UBE2D4Q9Y2X8 147 aa13.48□□□□□ -0.25
PCDH1-201ENST00000287008 BPY2O14599 106 aa13.47□□□□□ -0.25
PCDH1-201ENST00000287008 CNFNQ9BYD5 112 aa13.46□□□□□ -0.25
PCDH1-201ENST00000287008 MRPS12O15235 138 aaKnown RBP13.46□□□□□ -0.25
PCDH1-201ENST00000287008 ATOX1O00244 68 aa13.45□□□□□ -0.26
PCDH1-201ENST00000287008 FOXI1Q12951 378 aa13.45□□□□□ -0.26
PCDH1-201ENST00000287008 IGKV2-28A0A075B6P5 120 aa13.45□□□□□ -0.26
PCDH1-201ENST00000287008 IGKV2D-28P01615 120 aa13.45□□□□□ -0.26
PCDH1-201ENST00000287008 CHCHD7Q9BUK0 85 aa13.45□□□□□ -0.26
PCDH1-201ENST00000287008 RAI1Q7Z5J4 1906 aaPredicted RBP13.45□□□□□ -0.26
PCDH1-201ENST00000287008 PTH2Q96A98 100 aa13.45□□□□□ -0.26
PCDH1-201ENST00000287008 LOC107984640A0A0U1RRK4 108 aa13.44□□□□□ -0.26
PCDH1-201ENST00000287008 TCL1BO95988 128 aa13.44□□□□□ -0.26
PCDH1-201ENST00000287008 A8MZ25 164 aa13.44□□□□□ -0.26
PCDH1-201ENST00000287008 HECTD1Q9ULT8 2610 aa13.44□□□□□ -0.26
PCDH1-201ENST00000287008 USP24Q9UPU5 2620 aa13.43□□□□□ -0.26
PCDH1-201ENST00000287008 C1orf158Q8N1D5 194 aa13.43□□□□□ -0.26
PCDH1-201ENST00000287008 TRAV23DV6A0A075B6W5 121 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 M0R378 163 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 TMEM258P61165 79 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 MAPKAPK5-AS1Q8N8E1 139 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 CDC42SE2Q9NRR3 84 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 Q6ZTC4 211 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 FAM236AA0A1B0GUQ0 79 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 FAM236BA0A1B0GV22 79 aa13.42□□□□□ -0.26
PCDH1-201ENST00000287008 EXPH5Q8NEV8 1989 aa13.41□□□□□ -0.26
PCDH1-201ENST00000287008 TIMM17BO60830 172 aa13.41□□□□□ -0.26
PCDH1-201ENST00000287008 LINC00474Q9P2X8 69 aa13.4□□□□□ -0.26
PCDH1-201ENST00000287008 UBE2D1P51668 147 aa13.4□□□□□ -0.26
PCDH1-201ENST00000287008 ATG2AQ2TAZ0 1938 aa13.4□□□□□ -0.26
PCDH1-201ENST00000287008 GAS8-AS1O95177 125 aa13.4□□□□□ -0.26
PCDH1-201ENST00000287008 MGAM2Q2M2H8 2515 aa13.39□□□□□ -0.27
PCDH1-201ENST00000287008 WFDC9Q8NEX5 89 aa13.39□□□□□ -0.27
PCDH1-201ENST00000287008 SLPIP03973 132 aa13.39□□□□□ -0.27
PCDH1-201ENST00000287008 Q8IZM0 81 aa13.38□□□□□ -0.27
PCDH1-201ENST00000287008 SMIM20Q8N5G0 67 aa13.38□□□□□ -0.27
PCDH1-201ENST00000287008 CYSRT1A8MQ03 144 aa13.38□□□□□ -0.27
PCDH1-201ENST00000287008 ZNF706Q9Y5V0 76 aaPredicted RBP13.38□□□□□ -0.27
PCDH1-201ENST00000287008 LINC00643Q86TS7 51 aa13.37□□□□□ -0.27
PCDH1-201ENST00000287008 PPDPFQ9H3Y8 114 aa13.37□□□□□ -0.27
PCDH1-201ENST00000287008 MUC7Q8TAX7 377 aa13.37□□□□□ -0.27
PCDH1-201ENST00000287008 IGKV4-1P06312 121 aa13.37□□□□□ -0.27
PCDH1-201ENST00000287008 Q6ZQY7 126 aa13.36□□□□□ -0.27
PCDH1-201ENST00000287008 DHRS4-AS1Q9P1J3 65 aa13.36□□□□□ -0.27
PCDH1-201ENST00000287008 TRIAP1O43715 76 aa13.35□□□□□ -0.27
PCDH1-201ENST00000287008 RNASE8Q8TDE3 154 aaKnown RBP13.35□□□□□ -0.27
PCDH1-201ENST00000287008 TET2Q6N021 2002 aaPredicted RBP13.35□□□□□ -0.27
PCDH1-201ENST00000287008 CCKP06307 115 aa13.34□□□□□ -0.27
PCDH1-201ENST00000287008 AGRNO00468 2067 aa13.34□□□□□ -0.27
PCDH1-201ENST00000287008 COX17Q14061 63 aa13.34□□□□□ -0.27
PCDH1-201ENST00000287008 MAST4O15021 2626 aa13.34□□□□□ -0.27
PCDH1-201ENST00000287008 UPK3BQ9BT76 320 aa13.34□□□□□ -0.27
PCDH1-201ENST00000287008 TRBV30A0A0K0K1B3 111 aa13.33□□□□□ -0.27
PCDH1-201ENST00000287008 MUC4Q99102 2169 aa13.33□□□□□ -0.28
PCDH1-201ENST00000287008 LINC00242Q5T6M2 205 aa13.33□□□□□ -0.28
PCDH1-201ENST00000287008 TP73-AS1Q9UF72 201 aa13.33□□□□□ -0.28
PCDH1-201ENST00000287008 FHL2Q14192 279 aa13.33□□□□□ -0.28
PCDH1-201ENST00000287008 YPEL4Q96NS1 127 aa13.32□□□□□ -0.28
PCDH1-201ENST00000287008 SS18L2Q9UHA2 77 aa13.32□□□□□ -0.28
PCDH1-201ENST00000287008 RPL37AP8A6NKH3 93 aa13.32□□□□□ -0.28
PCDH1-201ENST00000287008 EGFEM1PQ0D2K5 195 aa13.32□□□□□ -0.28
PCDH1-201ENST00000287008 IGIPA6NJ69 53 aa13.31□□□□□ -0.28
PCDH1-201ENST00000287008 B5MCH6 92 aa13.31□□□□□ -0.28
PCDH1-201ENST00000287008 UNQ6190/PRO20217Q6UXQ8 127 aa13.31□□□□□ -0.28
PCDH1-201ENST00000287008 ADAMTS20P59510 1910 aa13.31□□□□□ -0.28
PCDH1-201ENST00000287008 C5orf47Q569G3 176 aa13.31□□□□□ -0.28
PCDH1-201ENST00000287008 SPINK6Q6UWN8 80 aa13.3□□□□□ -0.28
PCDH1-201ENST00000287008 PRRC2CQ9Y520 2896 aaKnown RBP13.3□□□□□ -0.28
PCDH1-201ENST00000287008 PLAC8L1A1L4L8 177 aa13.29□□□□□ -0.28
PCDH1-201ENST00000287008 TEX49A0A1B0GTD5 131 aa13.29□□□□□ -0.28
PCDH1-201ENST00000287008 ZNF73O43830 326 aaPredicted RBP13.29□□□□□ -0.28
PCDH1-201ENST00000287008 NHLRC4P0CG21 123 aaPredicted RBP13.28□□□□□ -0.28
PCDH1-201ENST00000287008 POM121L12Q8N7R1 296 aa13.28□□□□□ -0.28
PCDH1-201ENST00000287008 ATRQ13535 2644 aa13.28□□□□□ -0.28
PCDH1-201ENST00000287008 BEAN1Q3B7T3 259 aa13.27□□□□□ -0.28
PCDH1-201ENST00000287008 IGLV4-60A0A075B6I1 120 aa13.27□□□□□ -0.29
PCDH1-201ENST00000287008 COX8CQ7Z4L0 72 aa13.27□□□□□ -0.29
PCDH1-201ENST00000287008 EML5Q05BV3 1969 aa13.26□□□□□ -0.29
PCDH1-201ENST00000287008 GOLGB1Q14789 3259 aaKnown RBP13.26□□□□□ -0.29
PCDH1-201ENST00000287008 Q8N2B8 174 aa13.26□□□□□ -0.29
PCDH1-201ENST00000287008 SCXQ7RTU7 201 aa13.26□□□□□ -0.29
PCDH1-201ENST00000287008 CPAMD8Q8IZJ3 1885 aa13.26□□□□□ -0.29
PCDH1-201ENST00000287008 USP17L23D6RBM5 183 aa13.25□□□□□ -0.29
PCDH1-201ENST00000287008 C3orf84H3BNL1 204 aa13.24□□□□□ -0.29
PCDH1-201ENST00000287008 SMIM11BQ8TCY0 68 aa13.24□□□□□ -0.29
PCDH1-201ENST00000287008 M0QXV9 152 aa13.24□□□□□ -0.29
PCDH1-201ENST00000287008 SMIM1B2RUZ4 78 aa13.23□□□□□ -0.29
PCDH1-201ENST00000287008 CASC2Q6XLA1 102 aa13.23□□□□□ -0.29
PCDH1-201ENST00000287008 C6orf223Q8N319 242 aa13.23□□□□□ -0.29
PCDH1-201ENST00000287008 LINC00694P0DN24 101 aa13.23□□□□□ -0.29
PCDH1-201ENST00000287008 G3V4G9 280 aa13.23□□□□□ -0.29
PCDH1-201ENST00000287008 CSDC2Q9Y534 153 aaKnown RBP13.23□□□□□ -0.29
PCDH1-201ENST00000287008 RPL28P46779 137 aaKnown RBP13.22□□□□□ -0.29
PCDH1-201ENST00000287008 ATP5EP2Q5VTU8 51 aa13.22□□□□□ -0.29
PCDH1-201ENST00000287008 IGLV5-52A0A0A0MRZ9 124 aa13.22□□□□□ -0.29
PCDH1-201ENST00000287008 IGLV9-49A0A0B4J1Y8 123 aa13.21□□□□□ -0.3
PCDH1-201ENST00000287008 SEC61GP60059 68 aa13.2□□□□□ -0.3
PCDH1-201ENST00000287008 C1orf134Q5TEV5 83 aa13.2□□□□□ -0.3
PCDH1-201ENST00000287008 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.2□□□□□ -0.3
PCDH1-201ENST00000287008 FHL3Q13643 280 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms