RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 C5orf38Q86SI9 138 aa8.15□□□□□ -1.1
CLN3-244ENST00000636147 ODF3Q96PU9 254 aa8.15□□□□□ -1.1
CLN3-244ENST00000636147 C14orf132Q9NPU4 83 aa8.15□□□□□ -1.1
CLN3-244ENST00000636147 RPL35AP18077 110 aaKnown RBP8.15□□□□□ -1.1
CLN3-244ENST00000636147 DEFB112Q30KQ8 113 aa8.15□□□□□ -1.1
CLN3-244ENST00000636147 LINC00308Q8TCZ7 52 aa8.15□□□□□ -1.1
CLN3-244ENST00000636147 SND1-IT1Q9HBX3 110 aa8.15□□□□□ -1.1
CLN3-244ENST00000636147 LRBAP50851 2863 aa8.15□□□□□ -1.11
CLN3-244ENST00000636147 MUC4Q99102 2169 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 HIST2H2BDQ6DRA6 164 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 ZNF575Q86XF7 245 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 TMEM86BQ8N661 226 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 H3BUA1 57 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 COX7A2LO14548 114 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 KIF25-AS1Q9Y6Z4 181 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 TRAV13-2A0A0B4J235 113 aa8.14□□□□□ -1.11
CLN3-244ENST00000636147 LECT2O14960 151 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 LINC00315P59091 139 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 MIR7-3HGQ8N6C7 128 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 KLK5Q9Y337 293 aaPredicted RBP8.13□□□□□ -1.11
CLN3-244ENST00000636147 ZFHX4Q86UP3 3567 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 IGHV4-30-2A0A087WSY4 118 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 hADV29S1A0JD25 119 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 CLPSL2Q6UWE3 100 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 K7EMT4 169 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 NDUFA7O95182 113 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 TMEM243Q9BU79 118 aa8.13□□□□□ -1.11
CLN3-244ENST00000636147 FBXL19-AS1Q494R0 122 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 DEFB130BP0DP73 79 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 DEFB130AP0DP74 79 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 C11orf71Q6IPW1 123 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 A0A1W2PPR1 153 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 K7EQG2 157 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 DCANP1Q8TF63 244 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 LAMTOR3Q9UHA4 124 aa8.12□□□□□ -1.11
CLN3-244ENST00000636147 LINC00694P0DN24 101 aa8.11□□□□□ -1.11
CLN3-244ENST00000636147 NRGNQ92686 78 aa8.11□□□□□ -1.11
CLN3-244ENST00000636147 C9orf85Q96MD7 179 aa8.11□□□□□ -1.11
CLN3-244ENST00000636147 AKAP13Q12802 2813 aa8.11□□□□□ -1.11
CLN3-244ENST00000636147 Q6Q795 121 aa8.11□□□□□ -1.11
CLN3-244ENST00000636147 NOP10Q9NPE3 64 aaKnown RBP8.11□□□□□ -1.11
CLN3-244ENST00000636147 UQCRQO14949 82 aa8.11□□□□□ -1.11
CLN3-244ENST00000636147 SLPIP03973 132 aa8.11□□□□□ -1.11
CLN3-244ENST00000636147 NHLRC4P0CG21 123 aaPredicted RBP8.11□□□□□ -1.11
CLN3-244ENST00000636147 MRPS36P82909 103 aaKnown RBP8.1□□□□□ -1.11
CLN3-244ENST00000636147 S100A7L2Q5SY68 101 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 C3orf22Q8N5N4 141 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 Q9UF83 564 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 J3KT08 172 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 HAMPP81172 84 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 SBSPONQ8IVN8 264 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 A0A096LPF7 62 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 A6NDX4 124 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 ATOX1O00244 68 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 MALP21145 153 aa8.1□□□□□ -1.11
CLN3-244ENST00000636147 TIRAPP58753 221 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 SPANXDQ9BXN6 97 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 SPANXCQ9NY87 97 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 OVOL2Q9BRP0 275 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 PPDPFQ9H3Y8 114 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 ZZEF1O43149 2961 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 M0QXV9 152 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 XCL1P47992 114 aa8.09□□□□□ -1.11
CLN3-244ENST00000636147 LOC107984640A0A0U1RRK4 108 aa8.08□□□□□ -1.12
CLN3-244ENST00000636147 RNF223E7ERA6 249 aa8.08□□□□□ -1.12
CLN3-244ENST00000636147 UBE2D4Q9Y2X8 147 aa8.08□□□□□ -1.12
CLN3-244ENST00000636147 PYGO1Q9Y3Y4 419 aa8.08□□□□□ -1.12
CLN3-244ENST00000636147 HIST2H2BCQ6DN03 193 aa8.08□□□□□ -1.12
CLN3-244ENST00000636147 PRB1P04280 392 aa8.08□□□□□ -1.12
CLN3-244ENST00000636147 NDUFA1O15239 70 aa8.07□□□□□ -1.12
CLN3-244ENST00000636147 HTN3P15516 51 aa8.07□□□□□ -1.12
CLN3-244ENST00000636147 DMDP11532 3685 aa8.07□□□□□ -1.12
CLN3-244ENST00000636147 ACANP16112 2415 aa8.07□□□□□ -1.12
CLN3-244ENST00000636147 MUC3AQ02505 3323 aa8.07□□□□□ -1.12
CLN3-244ENST00000636147 NCR3O14931 201 aa8.07□□□□□ -1.12
CLN3-244ENST00000636147 DNAJC30Q96LL9 226 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 AMELXQ99217 191 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 C19orf84I3L1E1 186 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 COX6A2Q02221 97 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 Q6ZSN1 163 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 COX7B2Q8TF08 81 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 FAM110AQ9BQ89 295 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 ZNF292O60281 2723 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 TRAV23DV6A0A075B6W5 121 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 UBL5Q9BZL1 73 aa8.06□□□□□ -1.12
CLN3-244ENST00000636147 A0A087WVE0 104 aa8.05□□□□□ -1.12
CLN3-244ENST00000636147 Q6ZTI0 123 aa8.05□□□□□ -1.12
CLN3-244ENST00000636147 ORMDL1Q9P0S3 153 aa8.05□□□□□ -1.12
CLN3-244ENST00000636147 FAM240AA0A1B0GVK7 77 aa8.05□□□□□ -1.12
CLN3-244ENST00000636147 BRI3O95415 125 aa8.05□□□□□ -1.12
CLN3-244ENST00000636147 EIF4EBP3O60516 100 aaPredicted RBP8.04□□□□□ -1.12
CLN3-244ENST00000636147 C10orf105Q8TEF2 133 aa8.04□□□□□ -1.12
CLN3-244ENST00000636147 Q8N2B8 174 aa8.04□□□□□ -1.12
CLN3-244ENST00000636147 DMXL1Q9Y485 3027 aa8.04□□□□□ -1.12
CLN3-244ENST00000636147 K7EQD1 137 aa8.04□□□□□ -1.12
CLN3-244ENST00000636147 COL27A1Q8IZC6 1860 aaPredicted RBP8.04□□□□□ -1.12
CLN3-244ENST00000636147 H0YGX0 51 aa8.03□□□□□ -1.12
CLN3-244ENST00000636147 LINC01356Q8N9X3 169 aa8.03□□□□□ -1.12
CLN3-244ENST00000636147 LINC00242Q5T6M2 205 aa8.03□□□□□ -1.12
CLN3-244ENST00000636147 IMUPQ9GZP8 106 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms