RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 FAM104AQ969W3 186 aa6.65□□□□□ -1.34
PDLIM5-223ENST00000627587 C11orf68Q9H3H3 251 aaKnown RBP6.65□□□□□ -1.34
PDLIM5-223ENST00000627587 TRAV9-2A0A087WT02 112 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 TRAV12-1A0A0B4J245 112 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 NUPR2A6NF83 97 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 PKIAP61925 76 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 ODF1Q14990 250 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 BAALCQ8WXS3 180 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 LINC00476Q8WZB0 136 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 CHCHD7Q9BUK0 85 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 A0A087WX48 190 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 PAX4O43316 350 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 GYPEP15421 78 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 SPATA45Q537H7 98 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 NTM-AS1Q6ZSK4 140 aa6.64□□□□□ -1.35
PDLIM5-223ENST00000627587 GTSF1LQ9H1H1 148 aa6.63□□□□□ -1.35
PDLIM5-223ENST00000627587 PRO1933Q9H354 126 aa6.63□□□□□ -1.35
PDLIM5-223ENST00000627587 KLK5Q9Y337 293 aaPredicted RBP6.63□□□□□ -1.35
PDLIM5-223ENST00000627587 PYGO1Q9Y3Y4 419 aa6.63□□□□□ -1.35
PDLIM5-223ENST00000627587 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 IGKV2-29A2NJV5 120 aaPredicted RBP6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 F5H768 121 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 F8VRH5 84 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 LY6G6CO95867 125 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 HTN3P15516 51 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 PMVKQ15126 192 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 PAPPA-AS1Q5QFB9 102 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 MRPL35Q9NZE8 188 aaKnown RBP6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 A0A0J9YWU9 116 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 hDV102S1A0JD36 115 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 PRSS29PA6NIE9 313 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 DPM2O94777 84 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 IGKCP01834 107 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 NPSP0C0P6 89 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 C12orf74Q32Q52 190 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 TMEM97Q5BJF2 176 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 ZC2HC1BQ5TFG8 222 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 CEMP1Q6PRD7 247 aaPredicted RBP6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 ATP6V0E2Q8NHE4 81 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 VSIG2Q96IQ7 327 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 OPRPNQ99935 248 aaPredicted RBP6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 SPANXA1Q9NS26 97 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 UBE2D4Q9Y2X8 147 aa6.62□□□□□ -1.35
PDLIM5-223ENST00000627587 IGLV4-3A0A075B6K6 122 aa6.61□□□□□ -1.35
PDLIM5-223ENST00000627587 TRBV25-1A0A075B6N4 114 aa6.61□□□□□ -1.35
PDLIM5-223ENST00000627587 TRAV26-1A0A087WT03 109 aa6.61□□□□□ -1.35
PDLIM5-223ENST00000627587 A0A0J9YY99 117 aa6.61□□□□□ -1.35
PDLIM5-223ENST00000627587 PLNP26678 52 aa6.61□□□□□ -1.35
PDLIM5-223ENST00000627587 SMAGPQ0VAQ4 97 aa6.61□□□□□ -1.35
PDLIM5-223ENST00000627587 TMEM243Q9BU79 118 aa6.61□□□□□ -1.35
PDLIM5-223ENST00000627587 DNAH10Q8IVF4 4471 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 UBE2L6O14933 153 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 DGAT2L7PQ6IED9 249 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 KRTAP4-8Q9BYQ9 185 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 VCX2Q9H322 139 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 CST9LQ9H4G1 147 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 TRBV6-8A0A0A6YYG3 113 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 TIMM21Q9BVV7 248 aa6.6□□□□□ -1.35
PDLIM5-223ENST00000627587 H7C423 109 aa6.59□□□□□ -1.35
PDLIM5-223ENST00000627587 Q6ZTC4 211 aa6.59□□□□□ -1.35
PDLIM5-223ENST00000627587 MRPL52Q86TS9 123 aaKnown RBP6.59□□□□□ -1.35
PDLIM5-223ENST00000627587 C11orf45Q8TAV5 145 aa6.59□□□□□ -1.35
PDLIM5-223ENST00000627587 IGLV4-69A0A075B6H9 119 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 A0A096LPF7 62 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 FGF6P10767 208 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 MRPS36P82909 103 aaKnown RBP6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 MRPL23Q16540 153 aaKnown RBP6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 AMMECR1LQ6DCA0 310 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 STPG4Q8N801 248 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 AMELXQ99217 191 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 CSDC2Q9Y534 153 aaKnown RBP6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 ICOSQ9Y6W8 199 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 IGLC3P0DOY3 106 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 DDTP30046 118 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 Q6ZUT4 128 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 SH2D6Q7Z4S9 175 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 C2orf88Q9BSF0 95 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 CHCHD5Q9BSY4 110 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 UQCR10Q9UDW1 63 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 TP73-AS1Q9UF72 201 aa6.58□□□□□ -1.36
PDLIM5-223ENST00000627587 ZNF25P17030 456 aaPredicted RBP6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 NANOS2P60321 138 aaKnown RBP6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 RNASE13Q5GAN3 156 aaKnown RBP6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 OR5A1Q8NGJ0 315 aa6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 C14orf144Q96I85 54 aa6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 TMEM101Q96IK0 257 aa6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 MIEN1Q9BRT3 115 aa6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 KRTAP17-1Q9BYP8 105 aa6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 HERC2O95714 4834 aa6.57□□□□□ -1.36
PDLIM5-223ENST00000627587 H3BNG1 76 aa6.56□□□□□ -1.36
PDLIM5-223ENST00000627587 TCTAP57738 103 aa6.56□□□□□ -1.36
PDLIM5-223ENST00000627587 GAGE6Q13070 117 aa6.56□□□□□ -1.36
PDLIM5-223ENST00000627587 LBHQ53QV2 105 aaPredicted RBP6.56□□□□□ -1.36
PDLIM5-223ENST00000627587 C11orf86A6NJI1 115 aa6.56□□□□□ -1.36
PDLIM5-223ENST00000627587 NFE4Q86UQ8 179 aa6.56□□□□□ -1.36
PDLIM5-223ENST00000627587 CHAC1Q9BUX1 264 aa6.56□□□□□ -1.36
PDLIM5-223ENST00000627587 DEFB131BA0A096LNP1 70 aa6.55□□□□□ -1.36
PDLIM5-223ENST00000627587 IGKV2D-26A0A0A0MRZ7 120 aa6.55□□□□□ -1.36
PDLIM5-223ENST00000627587 NMUP48645 174 aa6.55□□□□□ -1.36
PDLIM5-223ENST00000627587 SLC25A34Q6PIV7 304 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms