RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 EMP1P54849 157 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 DAZ2Q13117 558 aaKnown RBP3.72□□□□□ -1.81
SHMT1-211ENST00000618902 RHOHQ15669 191 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 C12orf74Q32Q52 190 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 ZFAND6Q6FIF0 208 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 MTURNQ8N3F0 131 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 RNASE8Q8TDE3 154 aaKnown RBP3.72□□□□□ -1.81
SHMT1-211ENST00000618902 LINC01587Q99440 93 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 CHAC1Q9BUX1 264 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 MSRB1Q9NZV6 116 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 DKK2Q9UBU2 259 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 TP73-AS1Q9UF72 201 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 SPCS1Q9Y6A9 102 aa3.72□□□□□ -1.81
SHMT1-211ENST00000618902 FAT2Q9NYQ8 4349 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 DEFB131BA0A096LNP1 70 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 TRBV27A0A0K0K1C4 114 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 CIDEAO60543 219 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 GCSHP23434 173 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 POLR2KP53803 58 aaKnown RBP3.71□□□□□ -1.82
SHMT1-211ENST00000618902 PMVKQ15126 192 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 ANXA2RQ3ZCQ2 193 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 C2orf66Q6UXQ4 117 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 PCP2Q8IVA1 136 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 C11orf72Q8NBR9 251 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 HIST1H4GQ99525 98 aa3.71□□□□□ -1.82
SHMT1-211ENST00000618902 SPANXB1Q9NS25 103 aaPredicted RBP3.71□□□□□ -1.82
SHMT1-211ENST00000618902 MRPL35Q9NZE8 188 aaKnown RBP3.71□□□□□ -1.82
SHMT1-211ENST00000618902 DYNC1H1Q14204 4646 aaKnown RBP3.71□□□□□ -1.82
SHMT1-211ENST00000618902 BIRC6Q9NR09 4857 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 TRGV11A0A075B6L2 103 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 IGHV1OR15-1A0A075B7D0 117 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 C11orf86A6NJI1 115 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 IGLL5B9A064 214 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 SMKR1H3BMG3 65 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 H3BVH4 76 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 M0QXV9 152 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 GNRH2O43555 120 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 ATP5G1P05496 136 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 HTN1P15515 57 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 DAD1P61803 113 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 SMAGPQ0VAQ4 97 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 FAM222AQ5U5X8 452 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 Q6ZTC4 211 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 Q6ZVH6 145 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 LINC00612Q8N6U2 182 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 ATP6V0E2Q8NHE4 81 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 RASL10AQ92737 203 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 MDFICQ9P1T7 246 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 NACAE9PAV3 2078 aa3.7□□□□□ -1.82
SHMT1-211ENST00000618902 IGHV3-16A0A0C4DH30 117 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 PRSS29PA6NIE9 313 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 IGIPA6NJ69 53 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 LY6G6CO95867 125 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 RNASE3P12724 160 aaKnown RBP3.69□□□□□ -1.82
SHMT1-211ENST00000618902 SRSF9Q13242 221 aaKnown RBP eCLIP3.69□□□□□ -1.82
SHMT1-211ENST00000618902 GAGE13Q4V321 117 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 Q6ZTI0 123 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 LINC00336Q6ZUF6 198 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 NFE4Q86UQ8 179 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 C14orf178Q8N769 122 aaPredicted RBP3.69□□□□□ -1.82
SHMT1-211ENST00000618902 ZNF479Q96JC4 524 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 SPXQ9BT56 116 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 NOP10Q9NPE3 64 aaKnown RBP3.69□□□□□ -1.82
SHMT1-211ENST00000618902 APLNQ9ULZ1 77 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 PYGO1Q9Y3Y4 419 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 KIF25-AS1Q9Y6Z4 181 aa3.69□□□□□ -1.82
SHMT1-211ENST00000618902 TRBV7-3A0A075B6L6 115 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.68□□□□□ -1.82
SHMT1-211ENST00000618902 A8MWV9 139 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 TMEM262E9PQX1 116 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 H3BMG7 143 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 I3L3M4 83 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 RPL24P83731 157 aaKnown RBP3.68□□□□□ -1.82
SHMT1-211ENST00000618902 ZNF876PQ49A33 203 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 SCGB1D4Q6XE38 83 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 ZFP2Q6ZN57 461 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 SH2D6Q7Z4S9 175 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 SLC25A29Q8N8R3 303 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 COPS9Q8WXC6 57 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 BAALCQ8WXS3 180 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 PLEKHB2Q96CS7 222 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 DNAJC30Q96LL9 226 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 C9orf85Q96MD7 179 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 SIGMAR1Q99720 223 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 SPANXDQ9BXN6 97 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 SPANXA1Q9NS26 97 aa3.68□□□□□ -1.82
SHMT1-211ENST00000618902 NHP2Q9NX24 153 aaKnown RBP3.68□□□□□ -1.82
SHMT1-211ENST00000618902 IGKV2D-26A0A0A0MRZ7 120 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 SDHAF1A6NFY7 115 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 F5H697 171 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 GAGE7O76087 117 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 GAGE12FP0CL80 117 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 GAGE12GP0CL81 117 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 GAGE12IP0CL82 117 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 DEFB130BP0DP73 79 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 DEFB130AP0DP74 79 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 GATA1P15976 413 aaPredicted RBP3.67□□□□□ -1.82
SHMT1-211ENST00000618902 UBE2D1P51668 147 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 FXYD2P54710 66 aa3.67□□□□□ -1.82
SHMT1-211ENST00000618902 CCL18P55774 89 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms